Gchil8612.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8612.t1
Unique NameGchil8612.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:612129..613040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8612Gchil8612Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 612129..613040 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8612.t1.start1Gchil8612.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 612129..612131 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8612.t1.CDS1Gchil8612.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 612129..613040 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8612.t1.exon1Gchil8612.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 612129..613040 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8612.t1.stop1Gchil8612.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 613038..613040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8612.t1Gchil8612.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 612129..613040 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8612.t1 ID=Gchil8612.t1|Name=Gchil8612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=304bp
MQSSTQSLKPSSRPTQPVAWFAQPVSVGNAIVETIEEEPIPEGPLPFPRV
QENGDTVNVHAGSSWIPSFASTMLPALPSHWLIETVPKTKVRERSSIFTA
LQRGGWIGCERPFHLVCKGVYRAIKVTNAINVVNIGCERDAAWLPHIVKK
LREEFRMVKLTCIGEHSDGFEDVDVRFVKMDVFEERFPNETDMLVAYKFV
ETRTLISAMKFLKNVKRSDSVQTLVIETFPDSDNSIRDGLLKMNTAIAPF
WFPTALYQYSNEEENEEKQAMKIIAVTVNQLFTDRNTPSMMDLVDPRKRL
VQE*
back to top

spliced messenger RNA

>Gchil8612.t1 ID=Gchil8612.t1|Name=Gchil8612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000088_pilon:612129..613040+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGCTCAACACAATCATTGAAGCCGTCTTCAAGACCCACTCAACC
CGTGGCTTGGTTCGCGCAACCAGTAAGCGTAGGGAACGCGATCGTGGAGA
CAATAGAAGAAGAGCCAATCCCAGAAGGGCCGCTACCATTTCCCCGCGTG
CAGGAGAATGGAGACACAGTCAACGTGCACGCAGGATCTTCTTGGATACC
GTCTTTCGCAAGCACCATGCTTCCGGCATTGCCTTCCCACTGGTTGATTG
AAACTGTTCCGAAAACAAAGGTGCGCGAACGGAGTTCTATATTTACGGCT
CTGCAGAGAGGGGGTTGGATCGGGTGTGAACGACCTTTTCACCTGGTCTG
CAAGGGCGTGTATCGGGCTATAAAAGTGACCAACGCGATCAATGTAGTGA
ACATTGGGTGTGAACGAGACGCGGCGTGGTTACCGCATATTGTGAAAAAG
CTAAGGGAGGAGTTTAGAATGGTGAAATTGACTTGCATTGGAGAGCATAG
CGATGGATTCGAAGACGTGGATGTCCGATTCGTGAAGATGGACGTGTTTG
AAGAGCGCTTTCCGAATGAAACTGATATGTTGGTGGCGTACAAATTCGTT
GAAACGAGAACGTTAATCAGCGCTATGAAATTCCTGAAAAACGTCAAGAG
AAGTGACAGTGTGCAAACGCTGGTGATTGAGACATTTCCGGACAGCGATA
ACTCGATTCGAGATGGGTTGCTCAAGATGAACACGGCCATCGCACCATTT
TGGTTTCCAACCGCACTGTATCAGTACAGCAACGAAGAGGAAAACGAAGA
AAAGCAAGCCATGAAAATAATCGCGGTGACGGTGAATCAACTGTTCACAG
ATCGTAACACGCCGAGCATGATGGATTTAGTAGACCCCAGAAAGCGACTG
GTTCAAGAGTAA
back to top

protein sequence of Gchil8612.t1

>Gchil8612.t1 ID=Gchil8612.t1|Name=Gchil8612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=304bp
MQSSTQSLKPSSRPTQPVAWFAQPVSVGNAIVETIEEEPIPEGPLPFPRV
QENGDTVNVHAGSSWIPSFASTMLPALPSHWLIETVPKTKVRERSSIFTA
LQRGGWIGCERPFHLVCKGVYRAIKVTNAINVVNIGCERDAAWLPHIVKK
LREEFRMVKLTCIGEHSDGFEDVDVRFVKMDVFEERFPNETDMLVAYKFV
ETRTLISAMKFLKNVKRSDSVQTLVIETFPDSDNSIRDGLLKMNTAIAPF
WFPTALYQYSNEEENEEKQAMKIIAVTVNQLFTDRNTPSMMDLVDPRKRL
VQE*
back to top

mRNA from alignment at tig00000088_pilon:612129..613040+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8612.t1 ID=Gchil8612.t1|Name=Gchil8612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000088_pilon:612129..613040+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAGCTCAACACAATCATTGAAGCCGTCTTCAAGACCCACTCAACC
CGTGGCTTGGTTCGCGCAACCAGTAAGCGTAGGGAACGCGATCGTGGAGA
CAATAGAAGAAGAGCCAATCCCAGAAGGGCCGCTACCATTTCCCCGCGTG
CAGGAGAATGGAGACACAGTCAACGTGCACGCAGGATCTTCTTGGATACC
GTCTTTCGCAAGCACCATGCTTCCGGCATTGCCTTCCCACTGGTTGATTG
AAACTGTTCCGAAAACAAAGGTGCGCGAACGGAGTTCTATATTTACGGCT
CTGCAGAGAGGGGGTTGGATCGGGTGTGAACGACCTTTTCACCTGGTCTG
CAAGGGCGTGTATCGGGCTATAAAAGTGACCAACGCGATCAATGTAGTGA
ACATTGGGTGTGAACGAGACGCGGCGTGGTTACCGCATATTGTGAAAAAG
CTAAGGGAGGAGTTTAGAATGGTGAAATTGACTTGCATTGGAGAGCATAG
CGATGGATTCGAAGACGTGGATGTCCGATTCGTGAAGATGGACGTGTTTG
AAGAGCGCTTTCCGAATGAAACTGATATGTTGGTGGCGTACAAATTCGTT
GAAACGAGAACGTTAATCAGCGCTATGAAATTCCTGAAAAACGTCAAGAG
AAGTGACAGTGTGCAAACGCTGGTGATTGAGACATTTCCGGACAGCGATA
ACTCGATTCGAGATGGGTTGCTCAAGATGAACACGGCCATCGCACCATTT
TGGTTTCCAACCGCACTGTATCAGTACAGCAACGAAGAGGAAAACGAAGA
AAAGCAAGCCATGAAAATAATCGCGGTGACGGTGAATCAACTGTTCACAG
ATCGTAACACGCCGAGCATGATGGATTTAGTAGACCCCAGAAAGCGACTG
GTTCAAGAGTAA
back to top

Coding sequence (CDS) from alignment at tig00000088_pilon:612129..613040+

>Gchil8612.t1 ID=Gchil8612.t1|Name=Gchil8612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000088_pilon:612129..613040+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAGCTCAACACAATCATTGAAGCCGTCTTCAAGACCCACTCAACC
CGTGGCTTGGTTCGCGCAACCAGTAAGCGTAGGGAACGCGATCGTGGAGA
CAATAGAAGAAGAGCCAATCCCAGAAGGGCCGCTACCATTTCCCCGCGTG
CAGGAGAATGGAGACACAGTCAACGTGCACGCAGGATCTTCTTGGATACC
GTCTTTCGCAAGCACCATGCTTCCGGCATTGCCTTCCCACTGGTTGATTG
AAACTGTTCCGAAAACAAAGGTGCGCGAACGGAGTTCTATATTTACGGCT
CTGCAGAGAGGGGGTTGGATCGGGTGTGAACGACCTTTTCACCTGGTCTG
CAAGGGCGTGTATCGGGCTATAAAAGTGACCAACGCGATCAATGTAGTGA
ACATTGGGTGTGAACGAGACGCGGCGTGGTTACCGCATATTGTGAAAAAG
CTAAGGGAGGAGTTTAGAATGGTGAAATTGACTTGCATTGGAGAGCATAG
CGATGGATTCGAAGACGTGGATGTCCGATTCGTGAAGATGGACGTGTTTG
AAGAGCGCTTTCCGAATGAAACTGATATGTTGGTGGCGTACAAATTCGTT
GAAACGAGAACGTTAATCAGCGCTATGAAATTCCTGAAAAACGTCAAGAG
AAGTGACAGTGTGCAAACGCTGGTGATTGAGACATTTCCGGACAGCGATA
ACTCGATTCGAGATGGGTTGCTCAAGATGAACACGGCCATCGCACCATTT
TGGTTTCCAACCGCACTGTATCAGTACAGCAACGAAGAGGAAAACGAAGA
AAAGCAAGCCATGAAAATAATCGCGGTGACGGTGAATCAACTGTTCACAG
ATCGTAACACGCCGAGCATGATGGATTTAGTAGACCCCAGAAAGCGACTG
GTTCAAGAGTAA
back to top