Gchil8610.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8610.t1
Unique NameGchil8610.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:606259..606957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1157632.AQWQ01000010_gene663
PFAMsNUDIX
Max annot lvl201174|Actinobacteria
Evalue6.4e-13
EggNOG OGsCOG0494@1|root,COG0494@2|Bacteria,2GQ98@201174|Actinobacteria
DescriptionNUDIX domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8610Gchil8610Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 606259..606957 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8610.t1.stop1Gchil8610.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 606259..606261 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8610.t1.CDS1Gchil8610.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 606259..606957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8610.t1.exon1Gchil8610.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 606259..606957 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8610.t1.start1Gchil8610.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 606955..606957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8610.t1Gchil8610.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 606259..606957 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8610.t1 ID=Gchil8610.t1|Name=Gchil8610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=233bp
MSEPPQHLCFFSDVKQANPNFKPNVTCPRIDKHPDLLVDNSPYSRFYHVT
VTDGSKRPQYDLVAIAEPTGAITLPVNEHNQIALIRQWRTVPSAVPGAIA
FDSPLNSSHGFYSKELPRGFPDHGESHADAAAREVREELGVATKKVWHLG
WCNFNTAIVMTDIPIYAVLVDQAERVTDQKDEAEVIEKVEWVSMDELGDC
VMTGGIRCGLTLAAISFAFAARGRIAQFIEER*
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spliced messenger RNA

>Gchil8610.t1 ID=Gchil8610.t1|Name=Gchil8610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000088_pilon:606259..606957- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAACCGCCGCAACATCTATGTTTCTTTTCCGATGTGAAGCAAGC
AAACCCGAACTTCAAACCAAACGTCACTTGCCCCCGAATCGACAAGCATC
CAGATCTCTTAGTTGATAATTCGCCCTATAGTCGTTTTTACCATGTCACT
GTCACCGATGGATCCAAACGTCCTCAATATGATCTCGTCGCTATCGCTGA
ACCCACAGGTGCTATAACGCTTCCCGTCAACGAACATAACCAAATTGCTT
TGATTCGCCAATGGCGAACTGTTCCTTCCGCAGTTCCGGGGGCTATTGCC
TTTGATAGTCCTCTAAACTCGTCGCATGGCTTCTACTCCAAAGAGCTTCC
TCGAGGATTTCCAGATCATGGTGAGTCTCACGCTGATGCAGCTGCCCGTG
AAGTGCGGGAAGAGCTCGGTGTGGCTACGAAAAAGGTATGGCACCTTGGG
TGGTGTAACTTCAACACAGCCATAGTAATGACCGATATTCCCATATACGC
CGTCCTGGTCGATCAAGCGGAAAGAGTCACAGACCAAAAAGATGAGGCTG
AGGTCATTGAGAAAGTAGAATGGGTCTCCATGGATGAATTAGGGGATTGT
GTTATGACGGGGGGCATAAGATGTGGGTTAACTCTTGCAGCCATATCGTT
CGCCTTCGCCGCGCGTGGTAGGATCGCGCAATTCATCGAAGAGCGTTGA
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protein sequence of Gchil8610.t1

>Gchil8610.t1 ID=Gchil8610.t1|Name=Gchil8610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=233bp
MSEPPQHLCFFSDVKQANPNFKPNVTCPRIDKHPDLLVDNSPYSRFYHVT
VTDGSKRPQYDLVAIAEPTGAITLPVNEHNQIALIRQWRTVPSAVPGAIA
FDSPLNSSHGFYSKELPRGFPDHGESHADAAAREVREELGVATKKVWHLG
WCNFNTAIVMTDIPIYAVLVDQAERVTDQKDEAEVIEKVEWVSMDELGDC
VMTGGIRCGLTLAAISFAFAARGRIAQFIEER*
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mRNA from alignment at tig00000088_pilon:606259..606957-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8610.t1 ID=Gchil8610.t1|Name=Gchil8610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000088_pilon:606259..606957- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGAACCGCCGCAACATCTATGTTTCTTTTCCGATGTGAAGCAAGC
AAACCCGAACTTCAAACCAAACGTCACTTGCCCCCGAATCGACAAGCATC
CAGATCTCTTAGTTGATAATTCGCCCTATAGTCGTTTTTACCATGTCACT
GTCACCGATGGATCCAAACGTCCTCAATATGATCTCGTCGCTATCGCTGA
ACCCACAGGTGCTATAACGCTTCCCGTCAACGAACATAACCAAATTGCTT
TGATTCGCCAATGGCGAACTGTTCCTTCCGCAGTTCCGGGGGCTATTGCC
TTTGATAGTCCTCTAAACTCGTCGCATGGCTTCTACTCCAAAGAGCTTCC
TCGAGGATTTCCAGATCATGGTGAGTCTCACGCTGATGCAGCTGCCCGTG
AAGTGCGGGAAGAGCTCGGTGTGGCTACGAAAAAGGTATGGCACCTTGGG
TGGTGTAACTTCAACACAGCCATAGTAATGACCGATATTCCCATATACGC
CGTCCTGGTCGATCAAGCGGAAAGAGTCACAGACCAAAAAGATGAGGCTG
AGGTCATTGAGAAAGTAGAATGGGTCTCCATGGATGAATTAGGGGATTGT
GTTATGACGGGGGGCATAAGATGTGGGTTAACTCTTGCAGCCATATCGTT
CGCCTTCGCCGCGCGTGGTAGGATCGCGCAATTCATCGAAGAGCGTTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:606259..606957-

>Gchil8610.t1 ID=Gchil8610.t1|Name=Gchil8610.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00000088_pilon:606259..606957- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGAACCGCCGCAACATCTATGTTTCTTTTCCGATGTGAAGCAAGC
AAACCCGAACTTCAAACCAAACGTCACTTGCCCCCGAATCGACAAGCATC
CAGATCTCTTAGTTGATAATTCGCCCTATAGTCGTTTTTACCATGTCACT
GTCACCGATGGATCCAAACGTCCTCAATATGATCTCGTCGCTATCGCTGA
ACCCACAGGTGCTATAACGCTTCCCGTCAACGAACATAACCAAATTGCTT
TGATTCGCCAATGGCGAACTGTTCCTTCCGCAGTTCCGGGGGCTATTGCC
TTTGATAGTCCTCTAAACTCGTCGCATGGCTTCTACTCCAAAGAGCTTCC
TCGAGGATTTCCAGATCATGGTGAGTCTCACGCTGATGCAGCTGCCCGTG
AAGTGCGGGAAGAGCTCGGTGTGGCTACGAAAAAGGTATGGCACCTTGGG
TGGTGTAACTTCAACACAGCCATAGTAATGACCGATATTCCCATATACGC
CGTCCTGGTCGATCAAGCGGAAAGAGTCACAGACCAAAAAGATGAGGCTG
AGGTCATTGAGAAAGTAGAATGGGTCTCCATGGATGAATTAGGGGATTGT
GTTATGACGGGGGGCATAAGATGTGGGTTAACTCTTGCAGCCATATCGTT
CGCCTTCGCCGCGCGTGGTAGGATCGCGCAATTCATCGAAGAGCGTTGA
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