Gchil8607.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8607.t1
Unique NameGchil8607.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length451
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:600180..601532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708774.1
Preferred nameACTL6A
PFAMsActin
Max annot lvl2759|Eukaryota
KEGG koko:K05692,ko:K11340,ko:K11400,ko:K11652,ko:K11767
KEGG Pathwayko04015,ko04145,ko04210,ko04390,ko04391,ko04510,ko04520,ko04530,ko04611,ko04670,ko04714,ko04745,ko04810,ko04919,ko04921,ko05100,ko05110,ko05130,ko05131,ko05132,ko05164,ko05205,ko05225,ko05410,ko05412,ko05414,ko05416,ko05418,map04015,map04145,map04210,map04390,map04391,map04510,map04520,map04530,map04611,map04670,map04714,map04745,map04810,map04919,map04921,map05100,map05110,map05130,map05131,map05132,map05164,map05205,map05225,map05410,map05412,map05414,map05416,map05418
GOsGO:0000123,GO:0000228,GO:0000278,GO:0000281,GO:0000785,GO:0000790,GO:0000812,GO:0000902,GO:0000904,GO:0000910,GO:0001654,GO:0003407,GO:0003674,GO:0003682,GO:0003712,GO:0003713,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006333,GO:0006337,GO:0006338,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016358,GO:0016514,GO:0016569,GO:0016570,GO:0016573,GO:0016579,GO:0016586,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0022008,GO:0022402,GO:0022411,GO:0022607,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0031011,GO:0031175,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031493,GO:0031498,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032984,GO:0032986,GO:0032989,GO:0032990,GO:0032991,GO:0033202,GO:0033554,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035060,GO:0035267,GO:0036211,GO:0040011,GO:0042221,GO:0042330,GO:0042393,GO:0042766,GO:0043010,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0043981,GO:0043982,GO:0043983,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051716,GO:0060041,GO:0060147,GO:0060148,GO:0060255,GO:0060303,GO:0060964,GO:0060966,GO:0060968,GO:0061640,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070603,GO:0070646,GO:0070647,GO:0070925,GO:0070983,GO:0071564,GO:0071565,GO:0071704,GO:0071824,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097346,GO:0097458,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1904949,GO:1990234,GO:2000112,GO:2000637,GO:2001141
Evalue8.35e-91
EggNOG OGsCOG5277@1|root,KOG0679@2759|Eukaryota
Descriptionchromatin organization
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03021,ko03029,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8607Gchil8607Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 600180..601532 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8607.t1.stop1Gchil8607.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 600180..600182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8607.t1.CDS1Gchil8607.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 600180..601532 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8607.t1.exon1Gchil8607.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 600180..601532 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8607.t1.start1Gchil8607.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 601530..601532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8607.t1Gchil8607.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 600180..601532 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8607.t1 ID=Gchil8607.t1|Name=Gchil8607.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=451bp
MYQVEGTVPSLVVDIGSHTVKAGTAGEDLPHVLIPSVLAYEYESEAADVQ
ANQRKYKPSRAGHNAVNIRKDNVELMSPFGSDGLVENWNLFETLLSHTLC
KELHAPTRENALLYAEPNHNGRKSRERIVELIFEKFEVPALYLARAAVLS
AYANGKTTGLVLDIGHSGTSAVPVEDGAVVKGKAIRTAIGGRTLNAVLDA
LLKNANLQLRPIWSYRRAITRVDGVDEDNLVRQSEIKELSFPKTTASFTE
FSRIQLLEEVKANLCVAHENPSVDLKSLPVVHGTFELPDGNTIEMNAERF
SVAERTVFGRLPHVIMEMNTDARLSYVDQYLNGSRPDAANERSDESLGLH
GLVVDAIRKCPEAIHRDMYAGVCLTGGTSDMGGLYERLSFGLLETYHKVR
VLAATGSHERKYCAWTGGSILATFSEFQKMWFSKSEYDENGSSFVHRKCQ
*
back to top

spliced messenger RNA

>Gchil8607.t1 ID=Gchil8607.t1|Name=Gchil8607.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000088_pilon:600180..601532- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCAGGTCGAGGGAACAGTTCCTAGCCTGGTGGTTGACATCGGCTC
TCATACAGTGAAAGCCGGTACCGCCGGTGAGGATCTTCCTCACGTACTCA
TCCCGTCAGTGCTCGCCTACGAATACGAGTCCGAAGCCGCCGATGTACAA
GCAAATCAGCGAAAGTACAAACCATCACGAGCTGGACATAATGCAGTCAA
CATTCGCAAGGACAATGTTGAGCTTATGAGCCCGTTTGGTTCAGACGGTC
TAGTTGAAAACTGGAATCTTTTTGAAACGCTTCTGTCTCACACTCTGTGC
AAAGAGCTTCATGCCCCCACGCGCGAAAACGCTTTACTCTATGCCGAACC
AAATCACAACGGACGAAAATCACGCGAGAGAATTGTCGAGCTTATCTTTG
AAAAGTTTGAAGTGCCTGCCCTTTATCTCGCTCGCGCTGCAGTTCTGTCG
GCTTACGCTAATGGAAAGACAACAGGCCTTGTCTTGGACATAGGCCATTC
CGGGACAAGTGCCGTCCCTGTAGAGGATGGTGCGGTAGTGAAAGGAAAAG
CAATCCGAACGGCCATTGGCGGTCGCACATTGAATGCAGTACTTGATGCT
CTGCTGAAGAACGCCAATCTTCAACTCCGTCCAATTTGGTCTTACAGGCG
AGCCATCACGCGAGTAGATGGTGTCGATGAAGACAATCTTGTGCGGCAGT
CAGAGATTAAAGAACTATCTTTTCCGAAAACTACTGCTTCCTTCACGGAG
TTTTCCAGAATTCAGCTACTAGAGGAGGTGAAGGCAAACTTGTGTGTCGC
CCACGAAAACCCTTCGGTGGACCTCAAGTCATTGCCCGTAGTCCATGGCA
CCTTCGAATTGCCCGACGGAAATACTATTGAAATGAACGCCGAAAGATTC
TCAGTAGCAGAAAGAACAGTGTTCGGGAGATTACCGCATGTAATAATGGA
GATGAACACGGATGCCCGACTCTCTTATGTTGACCAGTACTTAAATGGAT
CAAGGCCGGACGCAGCAAACGAACGATCTGACGAGTCACTCGGGCTACAT
GGATTGGTGGTCGATGCAATTAGAAAGTGCCCAGAAGCTATACATAGGGA
TATGTATGCAGGAGTTTGTCTTACAGGTGGTACGTCAGACATGGGCGGTT
TGTACGAAAGACTAAGCTTCGGTCTGTTGGAAACCTACCATAAGGTTCGT
GTGCTCGCCGCGACGGGCAGCCATGAGCGCAAGTACTGCGCCTGGACCGG
AGGAAGCATTTTGGCTACATTTTCTGAGTTTCAGAAAATGTGGTTCTCAA
AGTCCGAATACGATGAGAATGGATCCTCTTTCGTTCATCGCAAGTGTCAA
TAA
back to top

protein sequence of Gchil8607.t1

>Gchil8607.t1 ID=Gchil8607.t1|Name=Gchil8607.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=451bp
MYQVEGTVPSLVVDIGSHTVKAGTAGEDLPHVLIPSVLAYEYESEAADVQ
ANQRKYKPSRAGHNAVNIRKDNVELMSPFGSDGLVENWNLFETLLSHTLC
KELHAPTRENALLYAEPNHNGRKSRERIVELIFEKFEVPALYLARAAVLS
AYANGKTTGLVLDIGHSGTSAVPVEDGAVVKGKAIRTAIGGRTLNAVLDA
LLKNANLQLRPIWSYRRAITRVDGVDEDNLVRQSEIKELSFPKTTASFTE
FSRIQLLEEVKANLCVAHENPSVDLKSLPVVHGTFELPDGNTIEMNAERF
SVAERTVFGRLPHVIMEMNTDARLSYVDQYLNGSRPDAANERSDESLGLH
GLVVDAIRKCPEAIHRDMYAGVCLTGGTSDMGGLYERLSFGLLETYHKVR
VLAATGSHERKYCAWTGGSILATFSEFQKMWFSKSEYDENGSSFVHRKCQ
*
back to top

mRNA from alignment at tig00000088_pilon:600180..601532-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8607.t1 ID=Gchil8607.t1|Name=Gchil8607.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at tig00000088_pilon:600180..601532- (Gracilaria chilensis NLEC103_M9 male)
ATGTATCAGGTCGAGGGAACAGTTCCTAGCCTGGTGGTTGACATCGGCTC
TCATACAGTGAAAGCCGGTACCGCCGGTGAGGATCTTCCTCACGTACTCA
TCCCGTCAGTGCTCGCCTACGAATACGAGTCCGAAGCCGCCGATGTACAA
GCAAATCAGCGAAAGTACAAACCATCACGAGCTGGACATAATGCAGTCAA
CATTCGCAAGGACAATGTTGAGCTTATGAGCCCGTTTGGTTCAGACGGTC
TAGTTGAAAACTGGAATCTTTTTGAAACGCTTCTGTCTCACACTCTGTGC
AAAGAGCTTCATGCCCCCACGCGCGAAAACGCTTTACTCTATGCCGAACC
AAATCACAACGGACGAAAATCACGCGAGAGAATTGTCGAGCTTATCTTTG
AAAAGTTTGAAGTGCCTGCCCTTTATCTCGCTCGCGCTGCAGTTCTGTCG
GCTTACGCTAATGGAAAGACAACAGGCCTTGTCTTGGACATAGGCCATTC
CGGGACAAGTGCCGTCCCTGTAGAGGATGGTGCGGTAGTGAAAGGAAAAG
CAATCCGAACGGCCATTGGCGGTCGCACATTGAATGCAGTACTTGATGCT
CTGCTGAAGAACGCCAATCTTCAACTCCGTCCAATTTGGTCTTACAGGCG
AGCCATCACGCGAGTAGATGGTGTCGATGAAGACAATCTTGTGCGGCAGT
CAGAGATTAAAGAACTATCTTTTCCGAAAACTACTGCTTCCTTCACGGAG
TTTTCCAGAATTCAGCTACTAGAGGAGGTGAAGGCAAACTTGTGTGTCGC
CCACGAAAACCCTTCGGTGGACCTCAAGTCATTGCCCGTAGTCCATGGCA
CCTTCGAATTGCCCGACGGAAATACTATTGAAATGAACGCCGAAAGATTC
TCAGTAGCAGAAAGAACAGTGTTCGGGAGATTACCGCATGTAATAATGGA
GATGAACACGGATGCCCGACTCTCTTATGTTGACCAGTACTTAAATGGAT
CAAGGCCGGACGCAGCAAACGAACGATCTGACGAGTCACTCGGGCTACAT
GGATTGGTGGTCGATGCAATTAGAAAGTGCCCAGAAGCTATACATAGGGA
TATGTATGCAGGAGTTTGTCTTACAGGTGGTACGTCAGACATGGGCGGTT
TGTACGAAAGACTAAGCTTCGGTCTGTTGGAAACCTACCATAAGGTTCGT
GTGCTCGCCGCGACGGGCAGCCATGAGCGCAAGTACTGCGCCTGGACCGG
AGGAAGCATTTTGGCTACATTTTCTGAGTTTCAGAAAATGTGGTTCTCAA
AGTCCGAATACGATGAGAATGGATCCTCTTTCGTTCATCGCAAGTGTCAA
TAA
back to top

Coding sequence (CDS) from alignment at tig00000088_pilon:600180..601532-

>Gchil8607.t1 ID=Gchil8607.t1|Name=Gchil8607.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1353bp|location=Sequence derived from alignment at tig00000088_pilon:600180..601532- (Gracilaria chilensis NLEC103_M9 male)
ATGTATCAGGTCGAGGGAACAGTTCCTAGCCTGGTGGTTGACATCGGCTC
TCATACAGTGAAAGCCGGTACCGCCGGTGAGGATCTTCCTCACGTACTCA
TCCCGTCAGTGCTCGCCTACGAATACGAGTCCGAAGCCGCCGATGTACAA
GCAAATCAGCGAAAGTACAAACCATCACGAGCTGGACATAATGCAGTCAA
CATTCGCAAGGACAATGTTGAGCTTATGAGCCCGTTTGGTTCAGACGGTC
TAGTTGAAAACTGGAATCTTTTTGAAACGCTTCTGTCTCACACTCTGTGC
AAAGAGCTTCATGCCCCCACGCGCGAAAACGCTTTACTCTATGCCGAACC
AAATCACAACGGACGAAAATCACGCGAGAGAATTGTCGAGCTTATCTTTG
AAAAGTTTGAAGTGCCTGCCCTTTATCTCGCTCGCGCTGCAGTTCTGTCG
GCTTACGCTAATGGAAAGACAACAGGCCTTGTCTTGGACATAGGCCATTC
CGGGACAAGTGCCGTCCCTGTAGAGGATGGTGCGGTAGTGAAAGGAAAAG
CAATCCGAACGGCCATTGGCGGTCGCACATTGAATGCAGTACTTGATGCT
CTGCTGAAGAACGCCAATCTTCAACTCCGTCCAATTTGGTCTTACAGGCG
AGCCATCACGCGAGTAGATGGTGTCGATGAAGACAATCTTGTGCGGCAGT
CAGAGATTAAAGAACTATCTTTTCCGAAAACTACTGCTTCCTTCACGGAG
TTTTCCAGAATTCAGCTACTAGAGGAGGTGAAGGCAAACTTGTGTGTCGC
CCACGAAAACCCTTCGGTGGACCTCAAGTCATTGCCCGTAGTCCATGGCA
CCTTCGAATTGCCCGACGGAAATACTATTGAAATGAACGCCGAAAGATTC
TCAGTAGCAGAAAGAACAGTGTTCGGGAGATTACCGCATGTAATAATGGA
GATGAACACGGATGCCCGACTCTCTTATGTTGACCAGTACTTAAATGGAT
CAAGGCCGGACGCAGCAAACGAACGATCTGACGAGTCACTCGGGCTACAT
GGATTGGTGGTCGATGCAATTAGAAAGTGCCCAGAAGCTATACATAGGGA
TATGTATGCAGGAGTTTGTCTTACAGGTGGTACGTCAGACATGGGCGGTT
TGTACGAAAGACTAAGCTTCGGTCTGTTGGAAACCTACCATAAGGTTCGT
GTGCTCGCCGCGACGGGCAGCCATGAGCGCAAGTACTGCGCCTGGACCGG
AGGAAGCATTTTGGCTACATTTTCTGAGTTTCAGAAAATGTGGTTCTCAA
AGTCCGAATACGATGAGAATGGATCCTCTTTCGTTCATCGCAAGTGTCAA
TAA
back to top