Gchil8606.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8606.t1
Unique NameGchil8606.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:599054..599773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709113.1
PFAMsArf
Max annot lvl2759|Eukaryota
KEGG koko:K07955
Evalue2.27e-87
EggNOG OGsCOG1100@1|root,KOG0075@2759|Eukaryota
DescriptionBelongs to the small GTPase superfamily. Arf family
COG categoryL
BRITEko00000,ko04031,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8606Gchil8606Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 599054..599773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8606.t1Gchil8606.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 599054..599773 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8606.t1.start1Gchil8606.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 599054..599056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8606.t1.CDS1Gchil8606.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 599054..599097 +
Gchil8606.t1.CDS2Gchil8606.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 599161..599773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8606.t1.exon1Gchil8606.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 599054..599097 +
Gchil8606.t1.exon2Gchil8606.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 599161..599773 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8606.t1.intron1Gchil8606.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 599098..599160 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8606.t1.stop1Gchil8606.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 599771..599773 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8606.t1 ID=Gchil8606.t1|Name=Gchil8606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp
MFSQLWQNILEWLQNLFFQQEMELTILGLQNAGKTTLVNLISTGDFTDDR
IPTVGFNMRRVQKGGVTLKMWDLGGQSRFRTMWERYCRGVSAVVYVVDAA
DNDRFDTARLELHDILSRTALDGIPVLFLANKSDLPGAVKDIDEIINIFG
LKEIENHEISVYSISAKNRVNIDVTLQWLIDHGSKKTSSSTAAAVVTPAH
QTTGPAASSSNPPSAPTS*
back to top

spliced messenger RNA

>Gchil8606.t1 ID=Gchil8606.t1|Name=Gchil8606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000088_pilon:599054..599773+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCTCAGCTCTGGCAGAACATTTTGGAATGGCTACAGAATCTCTT
CTTTCAGCAAGAGATGGAGCTAACAATTCTCGGTTTGCAGAACGCCGGAA
AGACTACGCTTGTCAATTTGATATCAACTGGTGATTTCACAGATGATCGA
ATTCCTACTGTTGGCTTTAACATGCGTCGTGTGCAAAAGGGCGGTGTAAC
TCTTAAGATGTGGGACTTGGGCGGTCAATCGCGCTTTAGGACGATGTGGG
AGCGTTATTGCAGAGGCGTTTCAGCTGTGGTTTATGTCGTCGATGCTGCT
GACAACGACCGTTTCGACACCGCCCGACTTGAGCTTCATGACATCTTATC
CCGAACTGCGCTTGATGGTATTCCTGTCCTTTTTTTAGCAAATAAGAGTG
ATCTCCCAGGAGCCGTCAAGGATATTGATGAAATTATCAACATCTTCGGC
CTTAAGGAGATTGAGAATCATGAAATTTCTGTGTATTCCATCTCAGCGAA
GAACCGCGTTAACATTGATGTCACCTTGCAGTGGCTTATAGACCATGGTT
CGAAAAAGACCTCGTCCTCCACGGCAGCTGCTGTCGTCACACCTGCTCAC
CAGACCACAGGCCCAGCAGCATCATCTTCAAATCCTCCCAGCGCACCAAC
ATCGTAG
back to top

protein sequence of Gchil8606.t1

>Gchil8606.t1 ID=Gchil8606.t1|Name=Gchil8606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=219bp
MFSQLWQNILEWLQNLFFQQEMELTILGLQNAGKTTLVNLISTGDFTDDR
IPTVGFNMRRVQKGGVTLKMWDLGGQSRFRTMWERYCRGVSAVVYVVDAA
DNDRFDTARLELHDILSRTALDGIPVLFLANKSDLPGAVKDIDEIINIFG
LKEIENHEISVYSISAKNRVNIDVTLQWLIDHGSKKTSSSTAAAVVTPAH
QTTGPAASSSNPPSAPTS*
back to top

mRNA from alignment at tig00000088_pilon:599054..599773+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8606.t1 ID=Gchil8606.t1|Name=Gchil8606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000088_pilon:599054..599773+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTCTCAGCTCTGGCAGAACATTTTGGAATGGCTACAGAAGTACGT
TGCAGCTCGAATTAATCGTCGTTTCCACCTCGACTAACACTTCTCTATAT
CTTACAGTCTCTTCTTTCAGCAAGAGATGGAGCTAACAATTCTCGGTTTG
CAGAACGCCGGAAAGACTACGCTTGTCAATTTGATATCAACTGGTGATTT
CACAGATGATCGAATTCCTACTGTTGGCTTTAACATGCGTCGTGTGCAAA
AGGGCGGTGTAACTCTTAAGATGTGGGACTTGGGCGGTCAATCGCGCTTT
AGGACGATGTGGGAGCGTTATTGCAGAGGCGTTTCAGCTGTGGTTTATGT
CGTCGATGCTGCTGACAACGACCGTTTCGACACCGCCCGACTTGAGCTTC
ATGACATCTTATCCCGAACTGCGCTTGATGGTATTCCTGTCCTTTTTTTA
GCAAATAAGAGTGATCTCCCAGGAGCCGTCAAGGATATTGATGAAATTAT
CAACATCTTCGGCCTTAAGGAGATTGAGAATCATGAAATTTCTGTGTATT
CCATCTCAGCGAAGAACCGCGTTAACATTGATGTCACCTTGCAGTGGCTT
ATAGACCATGGTTCGAAAAAGACCTCGTCCTCCACGGCAGCTGCTGTCGT
CACACCTGCTCACCAGACCACAGGCCCAGCAGCATCATCTTCAAATCCTC
CCAGCGCACCAACATCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000088_pilon:599054..599773+

>Gchil8606.t1 ID=Gchil8606.t1|Name=Gchil8606.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000088_pilon:599054..599773+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTCTCAGCTCTGGCAGAACATTTTGGAATGGCTACAGAATCTCTT
CTTTCAGCAAGAGATGGAGCTAACAATTCTCGGTTTGCAGAACGCCGGAA
AGACTACGCTTGTCAATTTGATATCAACTGGTGATTTCACAGATGATCGA
ATTCCTACTGTTGGCTTTAACATGCGTCGTGTGCAAAAGGGCGGTGTAAC
TCTTAAGATGTGGGACTTGGGCGGTCAATCGCGCTTTAGGACGATGTGGG
AGCGTTATTGCAGAGGCGTTTCAGCTGTGGTTTATGTCGTCGATGCTGCT
GACAACGACCGTTTCGACACCGCCCGACTTGAGCTTCATGACATCTTATC
CCGAACTGCGCTTGATGGTATTCCTGTCCTTTTTTTAGCAAATAAGAGTG
ATCTCCCAGGAGCCGTCAAGGATATTGATGAAATTATCAACATCTTCGGC
CTTAAGGAGATTGAGAATCATGAAATTTCTGTGTATTCCATCTCAGCGAA
GAACCGCGTTAACATTGATGTCACCTTGCAGTGGCTTATAGACCATGGTT
CGAAAAAGACCTCGTCCTCCACGGCAGCTGCTGTCGTCACACCTGCTCAC
CAGACCACAGGCCCAGCAGCATCATCTTCAAATCCTCCCAGCGCACCAAC
ATCGTAG
back to top