Gchil8596.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8596.t1
Unique Name	Gchil8596.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	295

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:522726..523610 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS091CT
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15108
KEGG TC	2.A.29.16,2.A.29.28
Evalue	1.7e-68
EggNOG OGs	KOG0752@1\|root,KOG0752@2759\|Eukaryota
Description	mitochondrial transport
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8596	Gchil8596	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 522726..523610 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8596.t1.start1	Gchil8596.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 522726..522728 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8596.t1.CDS1	Gchil8596.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 522726..523610 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8596.t1.exon1	Gchil8596.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 522726..523610 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8596.t1.stop1	Gchil8596.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 523608..523610 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8596.t1	Gchil8596.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 522726..523610 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:522726..523610+
coding sequence from alignment at tig00000088_pilon:522726..523610+

mRNA sequence

>Gchil8596.t1 ID=Gchil8596.t1|Name=Gchil8596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=295bp
MANSPKRLSPARDLLCGAVAGVTARIFVAPLDLLKIRFQVQSETKGLYQY
RHLTSAFRTIVSTEGVRALWKGNLSAMLMVTPYSAFQLAAFYQLHQNTQI
THEPYASFLSLSVGAVSSCFATICTYPLDLLRTRFAAQTEPRQYITLRHA
TSIIYAREGVSGFYAGLYPTLLSVVPYMSTQFAVYEGAKQHILTTSSRQE
LHPQESVVIGGVSGVVSKLLTLPLDNAKKIMQVGGQFRASDTSRYRGMGD
VLASVWSLHGWRGWFRGAVPSILKAAPNSAITFSVYEAFKKNLM*

spliced messenger RNA

>Gchil8596.t1 ID=Gchil8596.t1|Name=Gchil8596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000088_pilon:522726..523610+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTAATTCTCCAAAACGGCTGTCCCCAGCTCGCGATCTGCTCTGCGG
TGCTGTGGCAGGCGTCACGGCCCGGATCTTTGTCGCGCCATTGGATCTAC
TTAAGATTCGCTTTCAAGTGCAGTCCGAGACCAAAGGTTTGTATCAATAC
CGACATCTCACCTCTGCTTTTCGAACGATCGTATCGACTGAGGGAGTCAG
GGCACTTTGGAAAGGAAATCTGTCTGCAATGCTCATGGTCACCCCATACT
CAGCTTTCCAACTTGCTGCCTTTTACCAACTTCACCAAAACACTCAAATC
ACGCACGAACCCTACGCATCCTTCTTGTCACTATCTGTCGGGGCAGTGTC
GAGCTGCTTTGCAACCATCTGCACATATCCGCTCGATCTACTGCGAACTC
GTTTTGCCGCTCAAACAGAGCCACGTCAATATATTACCTTGAGGCATGCC
ACATCCATCATCTACGCTCGAGAAGGCGTGAGTGGCTTTTATGCAGGTCT
ATACCCCACGCTTTTGTCCGTAGTACCGTATATGTCTACCCAATTCGCCG
TGTACGAAGGCGCTAAACAACACATTCTTACTACAAGCTCTAGACAAGAG
CTACACCCACAGGAGAGTGTTGTCATTGGCGGTGTGTCTGGTGTGGTATC
CAAATTGCTCACCCTGCCTCTAGATAACGCCAAGAAAATCATGCAAGTGG
GAGGCCAGTTTCGTGCCAGTGACACCAGCCGATATCGAGGCATGGGTGAT
GTCTTAGCTAGTGTTTGGAGCCTACATGGGTGGCGCGGTTGGTTTAGAGG
CGCAGTGCCCAGCATTTTGAAGGCCGCTCCCAATTCGGCAATAACGTTTT
CAGTGTACGAAGCTTTCAAGAAGAACTTGATGTAG

protein sequence of Gchil8596.t1

>Gchil8596.t1 ID=Gchil8596.t1|Name=Gchil8596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=295bp
MANSPKRLSPARDLLCGAVAGVTARIFVAPLDLLKIRFQVQSETKGLYQY
RHLTSAFRTIVSTEGVRALWKGNLSAMLMVTPYSAFQLAAFYQLHQNTQI
THEPYASFLSLSVGAVSSCFATICTYPLDLLRTRFAAQTEPRQYITLRHA
TSIIYAREGVSGFYAGLYPTLLSVVPYMSTQFAVYEGAKQHILTTSSRQE
LHPQESVVIGGVSGVVSKLLTLPLDNAKKIMQVGGQFRASDTSRYRGMGD
VLASVWSLHGWRGWFRGAVPSILKAAPNSAITFSVYEAFKKNLM*

mRNA from alignment at tig00000088_pilon:522726..523610+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8596.t1 ID=Gchil8596.t1|Name=Gchil8596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000088_pilon:522726..523610+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTAATTCTCCAAAACGGCTGTCCCCAGCTCGCGATCTGCTCTGCGG
TGCTGTGGCAGGCGTCACGGCCCGGATCTTTGTCGCGCCATTGGATCTAC
TTAAGATTCGCTTTCAAGTGCAGTCCGAGACCAAAGGTTTGTATCAATAC
CGACATCTCACCTCTGCTTTTCGAACGATCGTATCGACTGAGGGAGTCAG
GGCACTTTGGAAAGGAAATCTGTCTGCAATGCTCATGGTCACCCCATACT
CAGCTTTCCAACTTGCTGCCTTTTACCAACTTCACCAAAACACTCAAATC
ACGCACGAACCCTACGCATCCTTCTTGTCACTATCTGTCGGGGCAGTGTC
GAGCTGCTTTGCAACCATCTGCACATATCCGCTCGATCTACTGCGAACTC
GTTTTGCCGCTCAAACAGAGCCACGTCAATATATTACCTTGAGGCATGCC
ACATCCATCATCTACGCTCGAGAAGGCGTGAGTGGCTTTTATGCAGGTCT
ATACCCCACGCTTTTGTCCGTAGTACCGTATATGTCTACCCAATTCGCCG
TGTACGAAGGCGCTAAACAACACATTCTTACTACAAGCTCTAGACAAGAG
CTACACCCACAGGAGAGTGTTGTCATTGGCGGTGTGTCTGGTGTGGTATC
CAAATTGCTCACCCTGCCTCTAGATAACGCCAAGAAAATCATGCAAGTGG
GAGGCCAGTTTCGTGCCAGTGACACCAGCCGATATCGAGGCATGGGTGAT
GTCTTAGCTAGTGTTTGGAGCCTACATGGGTGGCGCGGTTGGTTTAGAGG
CGCAGTGCCCAGCATTTTGAAGGCCGCTCCCAATTCGGCAATAACGTTTT
CAGTGTACGAAGCTTTCAAGAAGAACTTGATGTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:522726..523610+

>Gchil8596.t1 ID=Gchil8596.t1|Name=Gchil8596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000088_pilon:522726..523610+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTAATTCTCCAAAACGGCTGTCCCCAGCTCGCGATCTGCTCTGCGG
TGCTGTGGCAGGCGTCACGGCCCGGATCTTTGTCGCGCCATTGGATCTAC
TTAAGATTCGCTTTCAAGTGCAGTCCGAGACCAAAGGTTTGTATCAATAC
CGACATCTCACCTCTGCTTTTCGAACGATCGTATCGACTGAGGGAGTCAG
GGCACTTTGGAAAGGAAATCTGTCTGCAATGCTCATGGTCACCCCATACT
CAGCTTTCCAACTTGCTGCCTTTTACCAACTTCACCAAAACACTCAAATC
ACGCACGAACCCTACGCATCCTTCTTGTCACTATCTGTCGGGGCAGTGTC
GAGCTGCTTTGCAACCATCTGCACATATCCGCTCGATCTACTGCGAACTC
GTTTTGCCGCTCAAACAGAGCCACGTCAATATATTACCTTGAGGCATGCC
ACATCCATCATCTACGCTCGAGAAGGCGTGAGTGGCTTTTATGCAGGTCT
ATACCCCACGCTTTTGTCCGTAGTACCGTATATGTCTACCCAATTCGCCG
TGTACGAAGGCGCTAAACAACACATTCTTACTACAAGCTCTAGACAAGAG
CTACACCCACAGGAGAGTGTTGTCATTGGCGGTGTGTCTGGTGTGGTATC
CAAATTGCTCACCCTGCCTCTAGATAACGCCAAGAAAATCATGCAAGTGG
GAGGCCAGTTTCGTGCCAGTGACACCAGCCGATATCGAGGCATGGGTGAT
GTCTTAGCTAGTGTTTGGAGCCTACATGGGTGGCGCGGTTGGTTTAGAGG
CGCAGTGCCCAGCATTTTGAAGGCCGCTCCCAATTCGGCAATAACGTTTT
CAGTGTACGAAGCTTTCAAGAAGAACTTGATGTAG