Gchil8578.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8578.t1
Unique Name	Gchil8578.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	707

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:432867..434987 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_000714-tr
PFAMs	RVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl	33208\|Metazoa
Evalue	2.87e-71
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Description	K02A2.6-like
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8578	Gchil8578	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 432867..434987 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8578.t1.start1	Gchil8578.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 432867..432869 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8578.t1.CDS1	Gchil8578.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 432867..434987 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8578.t1.exon1	Gchil8578.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 432867..434987 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8578.t1.stop1	Gchil8578.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 434985..434987 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8578.t1	Gchil8578.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 432867..434987 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:432867..434987+
coding sequence from alignment at tig00000088_pilon:432867..434987+

mRNA sequence

>Gchil8578.t1 ID=Gchil8578.t1|Name=Gchil8578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=707bp
MFGVMVEPNLHLEGQSIPRTLKVEENTSQPVPVCHMKYNNYKVRASICFS
DRLAVPVTCVLETGAGPNVLNSRVIPEAVLRNLSRPPDNNPLVDANKRPL
NLRGMLTTVVQLGHLKVRLQFFVVDRLPTDCLLGTNFIDRHVKAILPGSR
TVALRYGGRISILDNTETKRGWFFKPKNTISIETVSNKVRITKQVVIPPM
HQILLPVSCATPGLVILQNHPRLANRHLNLMANGIVVNTPNQPFKVCLSN
FSSNDVKLPRNTNVGIALPAPQGVFTVSHTDLGKVAFDKEGGCANASTTT
KVSMNTNLESKLTDKASVDKEEEPDPERQLQDTVQIGEEKGQLRGRIIDL
LEEFETMWSGHLGQIKATQHRMGLLPDSKPIYQQPYRAGPKAREIELKEV
ERMLEEGAVEPANSDWAIPVVLVQKKGDKRMRFCVDYRRLNSMTTRNSYP
IPRMDECIDSLGDAQTFTTLDANSGYCQVHVGEEDRDKTTFTCHAGLFRF
TRMPFGLRNAPATFQRALDIILSKVKWTSALVYIHDVIIYSRSVEEHFAH
VRTVLTLLAEAGVTLKLRKCVFFTRTVEYMGHIIGPVTLEVESSNIRAVQ
EVKLSRSQTDVRSFIGLCSVYRRFVKGFAKIAAPLNKKLQKGEPERFENL
SNDEMDTFEELKRALLSPPILALPKTGLPYTLDTDASQSKLVVVSCKSST
TEINYV*

spliced messenger RNA

>Gchil8578.t1 ID=Gchil8578.t1|Name=Gchil8578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at tig00000088_pilon:432867..434987+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atgtttggcgtaatggtcgaacccaacctgcatttggaaggccaatcgat
acccagaaccttgaaggtggaagagaacacgtcacaaccagttccggttt
gtcatatgaaatacaacaactataaagtacgtgcttcaatatgtttctcc
gatcgccttgcggttccggtcacctgcgtcttggaaacgggggccggccc
aaacgtcctgaactcccgcgtcatacctgaggcggtacttcggaacttga
gccgacctcccgacaacaacccgctggtggatgcaaataagcgcccatta
aaccttcgaggtatgctcaccactgtggtgcagcttggacacctcaaggt
aagactgcaattctttgttgtcgaccgtttaccaacagactgcctactag
gtacgaacttcattgacagacatgtcaaagcaatccttcctggttcccgt
accgtcgccctacgttacgggggacgaatttctattttagataatacgga
aaccaaacggggatggttcttcaaaccgaaaaatacgatatccatcgaaa
cggtctccaacaaagtccgcattaccaaacaggttgttatcccgccaatg
caccaaatattgctaccggtgtcgtgtgcgacccccgggctggtcatact
gcaaaaccatccgaggttagcaaatcgacatctcaacttgatggccaacg
ggattgtcgtcaacaccccaaatcaaccctttaaggtgtgtctcagcaac
tttagcagtaatgacgtgaagttgccgagaaataccaatgttggcatcgc
actaccggcaccacaaggggtcttcaccgtatctcacactgatctcggca
aggtcgccttcgataaggaaggggggtgcgcaaatgcgtccacaaccaca
aaggtatcgatgaataccaacttggaatcaaagctaaccgataaggcatc
ggtagacaaagaagaggaacctgaccctgagaggcaattgcaagatacag
tccagatcggtgaagaaaaaggccaactgcggggccgtattatcgacctt
ctggaggagttcgaaaccatgtggtcaggccatctgggccaaattaaggc
cacacagcatcgcatggggctcctccctgactcgaagccgatttatcagc
aaccataccgtgcaggtccgaaggcgagagagatagaactcaaagaagtg
gagcgaatgctcgaagaaggtgcagttgaaccagccaactcagattgggc
tattcccgtggttctggttcagaagaaaggggataaacgcatgaggtttt
gtgtggactacaggaggctcaatagcatgaccaccaggaattcgtaccca
atacctagaatggatgagtgcatcgactccttgggagatgcgcagacatt
taccacgttggatgccaatagtggttattgtcaggtacacgtaggtgagg
aagatcgagataaaacgaccttcacgtgccatgcaggtttgtttcgcttc
acgcggatgcctttcgggttgcgcaatgctccagccaccttccaaagggc
actggacatcatcctttcgaaggttaaatggacatccgccttggtataca
tccatgatgtaatcatctactccagatcggtagaagagcattttgctcac
gtacgcaccgtactgaccctcctagctgaggcgggggtgacgctgaagct
acgcaaatgcgtcttctttaccagaacggttgaatacatgggccacatca
taggccctgttaccctagaggttgagtcgagcaacattagagccgtacag
gaagtcaagttgtcacgatcccagacagacgtacgatcctttataggttt
atgtagcgtctatcgtcgcttcgtgaagggattcgcgaaaatagcggctc
ccctcaacaagaagctccagaaaggtgaacctgaacggtttgagaatcta
tcgaacgacgaaatggatacctttgaggaattgaaacgagcgctgttgtc
gccgccaatcttagcgttaccgaaaacaggtctaccgtacacgctggata
cggatgcatcccagtccaaattggttgttgtctcatgcaagagcagcaca
acggagataaattacgtatag

protein sequence of Gchil8578.t1

>Gchil8578.t1 ID=Gchil8578.t1|Name=Gchil8578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=707bp
MFGVMVEPNLHLEGQSIPRTLKVEENTSQPVPVCHMKYNNYKVRASICFS
DRLAVPVTCVLETGAGPNVLNSRVIPEAVLRNLSRPPDNNPLVDANKRPL
NLRGMLTTVVQLGHLKVRLQFFVVDRLPTDCLLGTNFIDRHVKAILPGSR
TVALRYGGRISILDNTETKRGWFFKPKNTISIETVSNKVRITKQVVIPPM
HQILLPVSCATPGLVILQNHPRLANRHLNLMANGIVVNTPNQPFKVCLSN
FSSNDVKLPRNTNVGIALPAPQGVFTVSHTDLGKVAFDKEGGCANASTTT
KVSMNTNLESKLTDKASVDKEEEPDPERQLQDTVQIGEEKGQLRGRIIDL
LEEFETMWSGHLGQIKATQHRMGLLPDSKPIYQQPYRAGPKAREIELKEV
ERMLEEGAVEPANSDWAIPVVLVQKKGDKRMRFCVDYRRLNSMTTRNSYP
IPRMDECIDSLGDAQTFTTLDANSGYCQVHVGEEDRDKTTFTCHAGLFRF
TRMPFGLRNAPATFQRALDIILSKVKWTSALVYIHDVIIYSRSVEEHFAH
VRTVLTLLAEAGVTLKLRKCVFFTRTVEYMGHIIGPVTLEVESSNIRAVQ
EVKLSRSQTDVRSFIGLCSVYRRFVKGFAKIAAPLNKKLQKGEPERFENL
SNDEMDTFEELKRALLSPPILALPKTGLPYTLDTDASQSKLVVVSCKSST
TEINYV*

mRNA from alignment at tig00000088_pilon:432867..434987+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8578.t1 ID=Gchil8578.t1|Name=Gchil8578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2121bp|location=Sequence derived from alignment at tig00000088_pilon:432867..434987+ (Gracilaria chilensis NLEC103_M9 male)
atgtttggcgtaatggtcgaacccaacctgcatttggaaggccaatcgat
acccagaaccttgaaggtggaagagaacacgtcacaaccagttccggttt
gtcatatgaaatacaacaactataaagtacgtgcttcaatatgtttctcc
gatcgccttgcggttccggtcacctgcgtcttggaaacgggggccggccc
aaacgtcctgaactcccgcgtcatacctgaggcggtacttcggaacttga
gccgacctcccgacaacaacccgctggtggatgcaaataagcgcccatta
aaccttcgaggtatgctcaccactgtggtgcagcttggacacctcaaggt
aagactgcaattctttgttgtcgaccgtttaccaacagactgcctactag
gtacgaacttcattgacagacatgtcaaagcaatccttcctggttcccgt
accgtcgccctacgttacgggggacgaatttctattttagataatacgga
aaccaaacggggatggttcttcaaaccgaaaaatacgatatccatcgaaa
cggtctccaacaaagtccgcattaccaaacaggttgttatcccgccaatg
caccaaatattgctaccggtgtcgtgtgcgacccccgggctggtcatact
gcaaaaccatccgaggttagcaaatcgacatctcaacttgatggccaacg
ggattgtcgtcaacaccccaaatcaaccctttaaggtgtgtctcagcaac
tttagcagtaatgacgtgaagttgccgagaaataccaatgttggcatcgc
actaccggcaccacaaggggtcttcaccgtatctcacactgatctcggca
aggtcgccttcgataaggaaggggggtgcgcaaatgcgtccacaaccaca
aaggtatcgatgaataccaacttggaatcaaagctaaccgataaggcatc
ggtagacaaagaagaggaacctgaccctgagaggcaattgcaagatacag
tccagatcggtgaagaaaaaggccaactgcggggccgtattatcgacctt
ctggaggagttcgaaaccatgtggtcaggccatctgggccaaattaaggc
cacacagcatcgcatggggctcctccctgactcgaagccgatttatcagc
aaccataccgtgcaggtccgaaggcgagagagatagaactcaaagaagtg
gagcgaatgctcgaagaaggtgcagttgaaccagccaactcagattgggc
tattcccgtggttctggttcagaagaaaggggataaacgcatgaggtttt
gtgtggactacaggaggctcaatagcatgaccaccaggaattcgtaccca
atacctagaatggatgagtgcatcgactccttgggagatgcgcagacatt
taccacgttggatgccaatagtggttattgtcaggtacacgtaggtgagg
aagatcgagataaaacgaccttcacgtgccatgcaggtttgtttcgcttc
acgcggatgcctttcgggttgcgcaatgctccagccaccttccaaagggc
actggacatcatcctttcgaaggttaaatggacatccgccttggtataca
tccatgatgtaatcatctactccagatcggtagaagagcattttgctcac
gtacgcaccgtactgaccctcctagctgaggcgggggtgacgctgaagct
acgcaaatgcgtcttctttaccagaacggttgaatacatgggccacatca
taggccctgttaccctagaggttgagtcgagcaacattagagccgtacag
gaagtcaagttgtcacgatcccagacagacgtacgatcctttataggttt
atgtagcgtctatcgtcgcttcgtgaagggattcgcgaaaatagcggctc
ccctcaacaagaagctccagaaaggtgaacctgaacggtttgagaatcta
tcgaacgacgaaatggatacctttgaggaattgaaacgagcgctgttgtc
gccgccaatcttagcgttaccgaaaacaggtctaccgtacacgctggata
cggatgcatcccagtccaaattggttgttgtctcatgcaagagcagcaca
acggagataaattacgtatag

Coding sequence (CDS) from alignment at tig00000088_pilon:432867..434987+

>Gchil8578.t1 ID=Gchil8578.t1|Name=Gchil8578.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2121bp|location=Sequence derived from alignment at tig00000088_pilon:432867..434987+ (Gracilaria chilensis NLEC103_M9 male)
atgtttggcgtaatggtcgaacccaacctgcatttggaaggccaatcgat
acccagaaccttgaaggtggaagagaacacgtcacaaccagttccggttt
gtcatatgaaatacaacaactataaagtacgtgcttcaatatgtttctcc
gatcgccttgcggttccggtcacctgcgtcttggaaacgggggccggccc
aaacgtcctgaactcccgcgtcatacctgaggcggtacttcggaacttga
gccgacctcccgacaacaacccgctggtggatgcaaataagcgcccatta
aaccttcgaggtatgctcaccactgtggtgcagcttggacacctcaaggt
aagactgcaattctttgttgtcgaccgtttaccaacagactgcctactag
gtacgaacttcattgacagacatgtcaaagcaatccttcctggttcccgt
accgtcgccctacgttacgggggacgaatttctattttagataatacgga
aaccaaacggggatggttcttcaaaccgaaaaatacgatatccatcgaaa
cggtctccaacaaagtccgcattaccaaacaggttgttatcccgccaatg
caccaaatattgctaccggtgtcgtgtgcgacccccgggctggtcatact
gcaaaaccatccgaggttagcaaatcgacatctcaacttgatggccaacg
ggattgtcgtcaacaccccaaatcaaccctttaaggtgtgtctcagcaac
tttagcagtaatgacgtgaagttgccgagaaataccaatgttggcatcgc
actaccggcaccacaaggggtcttcaccgtatctcacactgatctcggca
aggtcgccttcgataaggaaggggggtgcgcaaatgcgtccacaaccaca
aaggtatcgatgaataccaacttggaatcaaagctaaccgataaggcatc
ggtagacaaagaagaggaacctgaccctgagaggcaattgcaagatacag
tccagatcggtgaagaaaaaggccaactgcggggccgtattatcgacctt
ctggaggagttcgaaaccatgtggtcaggccatctgggccaaattaaggc
cacacagcatcgcatggggctcctccctgactcgaagccgatttatcagc
aaccataccgtgcaggtccgaaggcgagagagatagaactcaaagaagtg
gagcgaatgctcgaagaaggtgcagttgaaccagccaactcagattgggc
tattcccgtggttctggttcagaagaaaggggataaacgcatgaggtttt
gtgtggactacaggaggctcaatagcatgaccaccaggaattcgtaccca
atacctagaatggatgagtgcatcgactccttgggagatgcgcagacatt
taccacgttggatgccaatagtggttattgtcaggtacacgtaggtgagg
aagatcgagataaaacgaccttcacgtgccatgcaggtttgtttcgcttc
acgcggatgcctttcgggttgcgcaatgctccagccaccttccaaagggc
actggacatcatcctttcgaaggttaaatggacatccgccttggtataca
tccatgatgtaatcatctactccagatcggtagaagagcattttgctcac
gtacgcaccgtactgaccctcctagctgaggcgggggtgacgctgaagct
acgcaaatgcgtcttctttaccagaacggttgaatacatgggccacatca
taggccctgttaccctagaggttgagtcgagcaacattagagccgtacag
gaagtcaagttgtcacgatcccagacagacgtacgatcctttataggttt
atgtagcgtctatcgtcgcttcgtgaagggattcgcgaaaatagcggctc
ccctcaacaagaagctccagaaaggtgaacctgaacggtttgagaatcta
tcgaacgacgaaatggatacctttgaggaattgaaacgagcgctgttgtc
gccgccaatcttagcgttaccgaaaacaggtctaccgtacacgctggata
cggatgcatcccagtccaaattggttgttgtctcatgcaagagcagcaca
acggagataaattacgtatag