Gchil8574.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8574.t1
Unique Name	Gchil8574.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	483

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:425157..426605 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005850961.1
PFAMs	Cupin_4
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K16914
Evalue	4.45e-73
EggNOG OGs	KOG3706@1\|root,KOG3706@2759\|Eukaryota,37SBW@33090\|Viridiplantae,34J72@3041\|Chlorophyta
EC	1.14.11.27
Description	Cupin superfamily protein
COG category	S
BRITE	ko00000,ko01000,ko03009,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8574	Gchil8574	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 425157..426605 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8574.t1.stop1	Gchil8574.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 425157..425159 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8574.t1.CDS1	Gchil8574.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 425157..426605 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8574.t1.exon1	Gchil8574.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 425157..426605 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8574.t1.start1	Gchil8574.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 426603..426605 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8574.t1	Gchil8574.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 425157..426605 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:425157..426605-
coding sequence from alignment at tig00000088_pilon:425157..426605-

mRNA sequence

>Gchil8574.t1 ID=Gchil8574.t1|Name=Gchil8574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp
MSPTRKRKAPRQRRKAPRPKQETLPFESAHVTNIEQGRLALQWLIAPVSL
QHFFSTYFEKKPLLLRNARCKFDSLTSLDEVKHLVTSGKLQYGKHVDVTS
YDAHGGRQTLNGQGVCGEKAWKQLEQNGCSIRMLRPQEHVEAIYRVCAHL
EAFVECMVGANVYVTPAQSQGFAPHFDDIDAFVCQVEGRKRWRVYKRRED
GLDELPRKSSIDFEQQEVEKGGRCVDTVLEQGDMLYMPRGYVHQAESCEL
RSVHVTLSMFQQWTWADLLLQSFRTAIEQHAVRDVRLRRSLPLRFTSYMG
VCHSAAGATASKRKKRRMFEQSFRRVLDAVGEHYALDTAADEMACKFMAA
RLPPPCVAEAGVDADEDEEAAVAAAETVSDESAVRAVGGGVGRVCMRPDG
VASVTSCARNSRGSGGVRAQTWTCLPHEAHAVNSVLQSHAHALRVRRVRM
RSARDRKDLVRALVDMRLARVLSVSPSAPRPC*

spliced messenger RNA

>Gchil8574.t1 ID=Gchil8574.t1|Name=Gchil8574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000088_pilon:425157..426605- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCAACCCGAAAGCGCAAGGCGCCAAGGCAACGGCGAAAGGCGCC
AAGGCCAAAGCAAGAGACACTTCCGTTCGAGTCGGCGCATGTGACAAACA
TTGAGCAGGGGCGACTGGCGCTACAATGGCTCATCGCCCCAGTGTCTCTG
CAACACTTCTTCAGCACGTACTTTGAGAAGAAGCCGCTGCTGTTGCGCAA
CGCGCGCTGCAAGTTCGACAGCCTCACGTCGCTTGACGAGGTGAAGCATC
TGGTGACGTCGGGCAAGCTACAGTACGGAAAGCACGTGGATGTGACGAGC
TACGATGCACACGGCGGACGGCAAACGCTCAACGGACAGGGTGTGTGCGG
TGAAAAGGCGTGGAAACAGTTAGAACAAAACGGCTGCTCCATTCGCATGT
TGCGGCCGCAGGAACACGTTGAGGCCATCTACCGCGTGTGCGCGCATCTG
GAGGCGTTTGTGGAGTGCATGGTGGGCGCCAACGTGTACGTGACGCCGGC
GCAGTCGCAGGGCTTTGCGCCGCACTTCGACGACATTGACGCGTTTGTGT
GTCAGGTGGAGGGTCGAAAGCGATGGCGCGTGTACAAGCGACGCGAGGAC
GGTCTGGACGAGCTGCCGAGAAAGTCCAGCATCGACTTTGAGCAGCAGGA
GGTAGAAAAGGGCGGCCGGTGCGTGGACACGGTGCTGGAGCAGGGCGACA
TGCTGTACATGCCGCGAGGGTACGTGCACCAGGCCGAAAGCTGCGAGCTG
CGCTCGGTGCACGTGACGCTATCCATGTTTCAGCAATGGACGTGGGCTGA
CTTGTTGTTACAATCGTTCCGGACGGCGATCGAGCAGCACGCGGTGCGGG
ACGTGCGTCTGCGACGCAGCCTACCGCTACGCTTCACGTCGTACATGGGC
GTATGCCACTCTGCGGCGGGCGCTACGGCGAGCAAGCGCAAGAAGCGACG
CATGTTTGAGCAGTCGTTCCGCAGAGTGCTTGACGCGGTGGGCGAGCACT
ACGCGCTGGACACGGCGGCCGACGAGATGGCATGCAAGTTCATGGCGGCG
CGACTACCGCCGCCCTGCGTCGCAGAAGCGGGAGTCGACGCGGACGAAGA
CGAGGAGGCAGCGGTAGCGGCAGCGGAGACGGTGAGCGACGAAAGCGCGG
TGCGCGCAGTGGGCGGCGGCGTGGGTCGCGTGTGCATGCGTCCCGACGGA
GTAGCATCGGTGACGAGCTGCGCGCGCAACTCGCGCGGCAGCGGCGGAGT
GCGCGCGCAAACGTGGACTTGTCTGCCACACGAAGCGCACGCCGTCAACA
GTGTGTTACAAAGTCATGCACACGCTCTGCGCGTGCGTCGCGTGCGCATG
CGTTCCGCACGCGATCGAAAGGACCTCGTGCGCGCGCTCGTTGACATGCG
ACTGGCTCGCGTGCTGTCGGTGTCGCCGTCTGCACCGCGTCCGTGTTAG

protein sequence of Gchil8574.t1

>Gchil8574.t1 ID=Gchil8574.t1|Name=Gchil8574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MSPTRKRKAPRQRRKAPRPKQETLPFESAHVTNIEQGRLALQWLIAPVSL
QHFFSTYFEKKPLLLRNARCKFDSLTSLDEVKHLVTSGKLQYGKHVDVTS
YDAHGGRQTLNGQGVCGEKAWKQLEQNGCSIRMLRPQEHVEAIYRVCAHL
EAFVECMVGANVYVTPAQSQGFAPHFDDIDAFVCQVEGRKRWRVYKRRED
GLDELPRKSSIDFEQQEVEKGGRCVDTVLEQGDMLYMPRGYVHQAESCEL
RSVHVTLSMFQQWTWADLLLQSFRTAIEQHAVRDVRLRRSLPLRFTSYMG
VCHSAAGATASKRKKRRMFEQSFRRVLDAVGEHYALDTAADEMACKFMAA
RLPPPCVAEAGVDADEDEEAAVAAAETVSDESAVRAVGGGVGRVCMRPDG
VASVTSCARNSRGSGGVRAQTWTCLPHEAHAVNSVLQSHAHALRVRRVRM
RSARDRKDLVRALVDMRLARVLSVSPSAPRPC*

mRNA from alignment at tig00000088_pilon:425157..426605-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8574.t1 ID=Gchil8574.t1|Name=Gchil8574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000088_pilon:425157..426605- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCAACCCGAAAGCGCAAGGCGCCAAGGCAACGGCGAAAGGCGCC
AAGGCCAAAGCAAGAGACACTTCCGTTCGAGTCGGCGCATGTGACAAACA
TTGAGCAGGGGCGACTGGCGCTACAATGGCTCATCGCCCCAGTGTCTCTG
CAACACTTCTTCAGCACGTACTTTGAGAAGAAGCCGCTGCTGTTGCGCAA
CGCGCGCTGCAAGTTCGACAGCCTCACGTCGCTTGACGAGGTGAAGCATC
TGGTGACGTCGGGCAAGCTACAGTACGGAAAGCACGTGGATGTGACGAGC
TACGATGCACACGGCGGACGGCAAACGCTCAACGGACAGGGTGTGTGCGG
TGAAAAGGCGTGGAAACAGTTAGAACAAAACGGCTGCTCCATTCGCATGT
TGCGGCCGCAGGAACACGTTGAGGCCATCTACCGCGTGTGCGCGCATCTG
GAGGCGTTTGTGGAGTGCATGGTGGGCGCCAACGTGTACGTGACGCCGGC
GCAGTCGCAGGGCTTTGCGCCGCACTTCGACGACATTGACGCGTTTGTGT
GTCAGGTGGAGGGTCGAAAGCGATGGCGCGTGTACAAGCGACGCGAGGAC
GGTCTGGACGAGCTGCCGAGAAAGTCCAGCATCGACTTTGAGCAGCAGGA
GGTAGAAAAGGGCGGCCGGTGCGTGGACACGGTGCTGGAGCAGGGCGACA
TGCTGTACATGCCGCGAGGGTACGTGCACCAGGCCGAAAGCTGCGAGCTG
CGCTCGGTGCACGTGACGCTATCCATGTTTCAGCAATGGACGTGGGCTGA
CTTGTTGTTACAATCGTTCCGGACGGCGATCGAGCAGCACGCGGTGCGGG
ACGTGCGTCTGCGACGCAGCCTACCGCTACGCTTCACGTCGTACATGGGC
GTATGCCACTCTGCGGCGGGCGCTACGGCGAGCAAGCGCAAGAAGCGACG
CATGTTTGAGCAGTCGTTCCGCAGAGTGCTTGACGCGGTGGGCGAGCACT
ACGCGCTGGACACGGCGGCCGACGAGATGGCATGCAAGTTCATGGCGGCG
CGACTACCGCCGCCCTGCGTCGCAGAAGCGGGAGTCGACGCGGACGAAGA
CGAGGAGGCAGCGGTAGCGGCAGCGGAGACGGTGAGCGACGAAAGCGCGG
TGCGCGCAGTGGGCGGCGGCGTGGGTCGCGTGTGCATGCGTCCCGACGGA
GTAGCATCGGTGACGAGCTGCGCGCGCAACTCGCGCGGCAGCGGCGGAGT
GCGCGCGCAAACGTGGACTTGTCTGCCACACGAAGCGCACGCCGTCAACA
GTGTGTTACAAAGTCATGCACACGCTCTGCGCGTGCGTCGCGTGCGCATG
CGTTCCGCACGCGATCGAAAGGACCTCGTGCGCGCGCTCGTTGACATGCG
ACTGGCTCGCGTGCTGTCGGTGTCGCCGTCTGCACCGCGTCCGTGTTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:425157..426605-

>Gchil8574.t1 ID=Gchil8574.t1|Name=Gchil8574.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000088_pilon:425157..426605- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCAACCCGAAAGCGCAAGGCGCCAAGGCAACGGCGAAAGGCGCC
AAGGCCAAAGCAAGAGACACTTCCGTTCGAGTCGGCGCATGTGACAAACA
TTGAGCAGGGGCGACTGGCGCTACAATGGCTCATCGCCCCAGTGTCTCTG
CAACACTTCTTCAGCACGTACTTTGAGAAGAAGCCGCTGCTGTTGCGCAA
CGCGCGCTGCAAGTTCGACAGCCTCACGTCGCTTGACGAGGTGAAGCATC
TGGTGACGTCGGGCAAGCTACAGTACGGAAAGCACGTGGATGTGACGAGC
TACGATGCACACGGCGGACGGCAAACGCTCAACGGACAGGGTGTGTGCGG
TGAAAAGGCGTGGAAACAGTTAGAACAAAACGGCTGCTCCATTCGCATGT
TGCGGCCGCAGGAACACGTTGAGGCCATCTACCGCGTGTGCGCGCATCTG
GAGGCGTTTGTGGAGTGCATGGTGGGCGCCAACGTGTACGTGACGCCGGC
GCAGTCGCAGGGCTTTGCGCCGCACTTCGACGACATTGACGCGTTTGTGT
GTCAGGTGGAGGGTCGAAAGCGATGGCGCGTGTACAAGCGACGCGAGGAC
GGTCTGGACGAGCTGCCGAGAAAGTCCAGCATCGACTTTGAGCAGCAGGA
GGTAGAAAAGGGCGGCCGGTGCGTGGACACGGTGCTGGAGCAGGGCGACA
TGCTGTACATGCCGCGAGGGTACGTGCACCAGGCCGAAAGCTGCGAGCTG
CGCTCGGTGCACGTGACGCTATCCATGTTTCAGCAATGGACGTGGGCTGA
CTTGTTGTTACAATCGTTCCGGACGGCGATCGAGCAGCACGCGGTGCGGG
ACGTGCGTCTGCGACGCAGCCTACCGCTACGCTTCACGTCGTACATGGGC
GTATGCCACTCTGCGGCGGGCGCTACGGCGAGCAAGCGCAAGAAGCGACG
CATGTTTGAGCAGTCGTTCCGCAGAGTGCTTGACGCGGTGGGCGAGCACT
ACGCGCTGGACACGGCGGCCGACGAGATGGCATGCAAGTTCATGGCGGCG
CGACTACCGCCGCCCTGCGTCGCAGAAGCGGGAGTCGACGCGGACGAAGA
CGAGGAGGCAGCGGTAGCGGCAGCGGAGACGGTGAGCGACGAAAGCGCGG
TGCGCGCAGTGGGCGGCGGCGTGGGTCGCGTGTGCATGCGTCCCGACGGA
GTAGCATCGGTGACGAGCTGCGCGCGCAACTCGCGCGGCAGCGGCGGAGT
GCGCGCGCAAACGTGGACTTGTCTGCCACACGAAGCGCACGCCGTCAACA
GTGTGTTACAAAGTCATGCACACGCTCTGCGCGTGCGTCGCGTGCGCATG
CGTTCCGCACGCGATCGAAAGGACCTCGTGCGCGCGCTCGTTGACATGCG
ACTGGCTCGCGTGCTGTCGGTGTCGCCGTCTGCACCGCGTCCGTGTTAG