Gchil857.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil857.t1
Unique NameGchil857.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:532528..533262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog745718.JADT01000028_gene2565
Max annot lvl976|Bacteroidetes
Evalue1.11e-11
EggNOG OGsCOG5492@1|root,COG5492@2|Bacteria,4NTD6@976|Bacteroidetes,1I5EC@117743|Flavobacteriia
DescriptionPkd domain containing protein
COG categoryN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil857Gchil857Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 532528..533262 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil857.t1.stop1Gchil857.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 532528..532530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil857.t1.CDS1Gchil857.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 532528..533262 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil857.t1.exon1Gchil857.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 532528..533262 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil857.t1.start1Gchil857.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 533260..533262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil857.t1Gchil857.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 532528..533262 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil857.t1 ID=Gchil857.t1|Name=Gchil857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=245bp
MGARSAVLAATLFFFLASVPVNGQKECNVYIPNADNIIVMDVEQRGPGGG
WEFQSSLQGYGGSGYLSYKPWSSFGGTEPKPYSIHDERIKTYFFTVNVTG
TYRVVMRSAAPHPTEHNDLWMSLPESGAVKRRFGETSNLGSPAWTNDAGE
VQLGTEHWFKVFQNSGGWRWNWGGKTVDHNGHDVISRVLRADGSWYSVRI
AGRSTQFAVDRIALYLCEGAECDNGSQRFNMATIWHGADQSVCE*
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spliced messenger RNA

>Gchil857.t1 ID=Gchil857.t1|Name=Gchil857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000017_pilon:532528..533262- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCTCGCTCTGCGGTACTGGCCGCGACGCTGTTTTTCTTTCTGGC
GTCAGTTCCCGTAAACGGCCAGAAAGAATGCAATGTGTACATTCCAAACG
CCGACAACATCATCGTGATGGATGTGGAACAACGCGGACCAGGCGGAGGC
TGGGAATTCCAATCATCTTTACAGGGCTACGGTGGCAGCGGCTATCTGAG
CTACAAACCGTGGTCGTCGTTCGGAGGCACGGAGCCCAAGCCATACTCTA
TACACGACGAACGCATAAAGACCTACTTCTTCACCGTCAACGTGACGGGA
ACTTATCGGGTTGTCATGCGTTCTGCGGCGCCGCACCCCACAGAACACAA
TGACCTGTGGATGTCGCTGCCGGAAAGCGGCGCGGTGAAGAGGAGATTCG
GCGAAACAAGTAACTTGGGCTCGCCGGCGTGGACCAATGATGCCGGGGAG
GTGCAGCTGGGTACCGAGCACTGGTTCAAAGTGTTCCAGAACTCTGGCGG
GTGGAGGTGGAATTGGGGAGGAAAGACGGTGGATCATAATGGACATGATG
TGATTTCTAGGGTGTTGAGGGCGGATGGTTCATGGTATTCGGTGAGGATT
GCTGGCAGGTCGACGCAGTTTGCGGTTGATCGTATTGCGTTATATCTCTG
TGAAGGTGCCGAGTGTGACAATGGGTCGCAGCGATTTAATATGGCGACAA
TTTGGCATGGAGCGGATCAGAGTGTGTGCGAATAA
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protein sequence of Gchil857.t1

>Gchil857.t1 ID=Gchil857.t1|Name=Gchil857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=245bp
MGARSAVLAATLFFFLASVPVNGQKECNVYIPNADNIIVMDVEQRGPGGG
WEFQSSLQGYGGSGYLSYKPWSSFGGTEPKPYSIHDERIKTYFFTVNVTG
TYRVVMRSAAPHPTEHNDLWMSLPESGAVKRRFGETSNLGSPAWTNDAGE
VQLGTEHWFKVFQNSGGWRWNWGGKTVDHNGHDVISRVLRADGSWYSVRI
AGRSTQFAVDRIALYLCEGAECDNGSQRFNMATIWHGADQSVCE*
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mRNA from alignment at tig00000017_pilon:532528..533262-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil857.t1 ID=Gchil857.t1|Name=Gchil857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000017_pilon:532528..533262- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGCTCGCTCTGCGGTACTGGCCGCGACGCTGTTTTTCTTTCTGGC
GTCAGTTCCCGTAAACGGCCAGAAAGAATGCAATGTGTACATTCCAAACG
CCGACAACATCATCGTGATGGATGTGGAACAACGCGGACCAGGCGGAGGC
TGGGAATTCCAATCATCTTTACAGGGCTACGGTGGCAGCGGCTATCTGAG
CTACAAACCGTGGTCGTCGTTCGGAGGCACGGAGCCCAAGCCATACTCTA
TACACGACGAACGCATAAAGACCTACTTCTTCACCGTCAACGTGACGGGA
ACTTATCGGGTTGTCATGCGTTCTGCGGCGCCGCACCCCACAGAACACAA
TGACCTGTGGATGTCGCTGCCGGAAAGCGGCGCGGTGAAGAGGAGATTCG
GCGAAACAAGTAACTTGGGCTCGCCGGCGTGGACCAATGATGCCGGGGAG
GTGCAGCTGGGTACCGAGCACTGGTTCAAAGTGTTCCAGAACTCTGGCGG
GTGGAGGTGGAATTGGGGAGGAAAGACGGTGGATCATAATGGACATGATG
TGATTTCTAGGGTGTTGAGGGCGGATGGTTCATGGTATTCGGTGAGGATT
GCTGGCAGGTCGACGCAGTTTGCGGTTGATCGTATTGCGTTATATCTCTG
TGAAGGTGCCGAGTGTGACAATGGGTCGCAGCGATTTAATATGGCGACAA
TTTGGCATGGAGCGGATCAGAGTGTGTGCGAATAA
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Coding sequence (CDS) from alignment at tig00000017_pilon:532528..533262-

>Gchil857.t1 ID=Gchil857.t1|Name=Gchil857.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000017_pilon:532528..533262- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGCTCGCTCTGCGGTACTGGCCGCGACGCTGTTTTTCTTTCTGGC
GTCAGTTCCCGTAAACGGCCAGAAAGAATGCAATGTGTACATTCCAAACG
CCGACAACATCATCGTGATGGATGTGGAACAACGCGGACCAGGCGGAGGC
TGGGAATTCCAATCATCTTTACAGGGCTACGGTGGCAGCGGCTATCTGAG
CTACAAACCGTGGTCGTCGTTCGGAGGCACGGAGCCCAAGCCATACTCTA
TACACGACGAACGCATAAAGACCTACTTCTTCACCGTCAACGTGACGGGA
ACTTATCGGGTTGTCATGCGTTCTGCGGCGCCGCACCCCACAGAACACAA
TGACCTGTGGATGTCGCTGCCGGAAAGCGGCGCGGTGAAGAGGAGATTCG
GCGAAACAAGTAACTTGGGCTCGCCGGCGTGGACCAATGATGCCGGGGAG
GTGCAGCTGGGTACCGAGCACTGGTTCAAAGTGTTCCAGAACTCTGGCGG
GTGGAGGTGGAATTGGGGAGGAAAGACGGTGGATCATAATGGACATGATG
TGATTTCTAGGGTGTTGAGGGCGGATGGTTCATGGTATTCGGTGAGGATT
GCTGGCAGGTCGACGCAGTTTGCGGTTGATCGTATTGCGTTATATCTCTG
TGAAGGTGCCGAGTGTGACAATGGGTCGCAGCGATTTAATATGGCGACAA
TTTGGCATGGAGCGGATCAGAGTGTGTGCGAATAA
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