Gchil8567.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8567.t1
Unique Name	Gchil8567.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	448

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:336437..337780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX49946
Max annot lvl	2759\|Eukaryota
Evalue	5.14e-82
EggNOG OGs	2AUPK@1\|root,2RZUJ@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8567	Gchil8567	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 336437..337780 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8567.t1.start1	Gchil8567.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 336437..336439 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8567.t1.CDS1	Gchil8567.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 336437..337780 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8567.t1.exon1	Gchil8567.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 336437..337780 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8567.t1.stop1	Gchil8567.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 337778..337780 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8567.t1	Gchil8567.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 336437..337780 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:336437..337780+
coding sequence from alignment at tig00000088_pilon:336437..337780+

mRNA sequence

>Gchil8567.t1 ID=Gchil8567.t1|Name=Gchil8567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=448bp
MAFAGVPLVPFRADSSLFTPRLISFRPRVTDYPCSRIMPRAQLVGMPEGF
GQKNVDSNDLETLLAEMRYSDPSRLPAIVQNNLEQLDEDFYRFLENKINA
SADLEERDTLRILQSAITEVMKELLDAIPSDEMEAAMNGSANSTIDVSSN
EDIAAATYDQLINDIVKARNTDNPYSLKISVEAAYPRIDLRLLERLNERI
SAKSSDVEALTDMRDLISLIMNERIKAATESVKGVLSVGDPTAMRKEIST
LARKGKLDDAFILLLQANLEQAKKANAKQAVDVLSLALNHAQSVKDVQLD
PEVRLIRALLRTEDVEVRSKMLMDSFQSQGSVTLIDGSATSGIAVDGKKF
VVALRRLIEEFGNVDQSFVLKLSKIGEESEAVARKLYDMEDKDLQDLQEE
AFHKRTVSVWDLERYEVEQEIEGRKAAWEGRLGEIPEGFGDDGKMQV*

spliced messenger RNA

>Gchil8567.t1 ID=Gchil8567.t1|Name=Gchil8567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000088_pilon:336437..337780+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTTGCTGGTGTTCCTCTCGTGCCCTTCAGGGCTGATTCCTCACT
GTTTACCCCGCGACTAATTTCATTTCGTCCCAGGGTCACGGACTATCCCT
GTTCTCGGATCATGCCGCGTGCTCAATTGGTGGGAATGCCCGAAGGCTTT
GGACAGAAAAATGTGGATAGCAATGACCTTGAAACCCTTTTGGCTGAGAT
GCGCTATTCGGACCCCTCAAGGCTACCTGCCATCGTGCAGAACAATCTTG
AGCAGCTTGATGAGGACTTTTATCGATTCTTAGAAAATAAGATTAACGCA
TCCGCAGACTTAGAAGAACGCGATACACTTCGTATTTTGCAAAGTGCTAT
AACAGAAGTTATGAAAGAATTGCTCGATGCTATTCCATCGGATGAGATGG
AGGCCGCCATGAATGGATCTGCAAACTCCACTATAGATGTCAGCTCAAAT
GAAGACATTGCTGCCGCCACATATGATCAGCTTATCAATGACATTGTGAA
AGCGAGGAATACAGATAATCCATATTCATTGAAGATCTCCGTCGAAGCGG
CATATCCACGAATAGACCTTCGTCTTTTGGAAAGATTGAATGAACGCATT
TCGGCCAAAAGTTCTGATGTTGAAGCTCTGACTGACATGCGAGATCTTAT
ATCGCTCATCATGAATGAACGCATTAAGGCAGCGACTGAAAGCGTCAAGG
GCGTTCTCTCGGTCGGTGATCCTACAGCAATGAGAAAAGAAATAAGTACA
CTTGCGCGGAAAGGAAAACTAGATGACGCCTTTATCCTTTTACTGCAAGC
GAATCTTGAACAGGCGAAGAAAGCCAATGCCAAACAAGCAGTGGATGTCT
TGTCTTTGGCACTCAATCATGCACAATCTGTAAAGGATGTGCAACTTGAT
CCGGAAGTTCGGTTGATTCGTGCATTGTTGCGCACAGAGGACGTCGAAGT
AAGGTCTAAGATGTTGATGGACAGTTTTCAGTCTCAAGGCTCAGTCACAC
TCATAGATGGATCTGCAACATCCGGCATCGCCGTCGATGGAAAGAAGTTT
GTCGTTGCTCTTAGAAGACTCATCGAAGAATTCGGCAATGTTGACCAAAG
TTTCGTCCTGAAATTGTCGAAGATTGGGGAAGAATCAGAAGCTGTTGCAC
GAAAATTGTATGATATGGAGGATAAGGATCTTCAGGACCTGCAAGAAGAG
GCTTTCCACAAACGAACTGTATCTGTGTGGGACTTGGAAAGATACGAAGT
TGAGCAGGAGATTGAAGGTCGCAAGGCCGCATGGGAGGGTAGATTAGGTG
AAATACCAGAAGGCTTCGGCGACGATGGAAAAATGCAAGTCTAG

protein sequence of Gchil8567.t1

>Gchil8567.t1 ID=Gchil8567.t1|Name=Gchil8567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=448bp
MAFAGVPLVPFRADSSLFTPRLISFRPRVTDYPCSRIMPRAQLVGMPEGF
GQKNVDSNDLETLLAEMRYSDPSRLPAIVQNNLEQLDEDFYRFLENKINA
SADLEERDTLRILQSAITEVMKELLDAIPSDEMEAAMNGSANSTIDVSSN
EDIAAATYDQLINDIVKARNTDNPYSLKISVEAAYPRIDLRLLERLNERI
SAKSSDVEALTDMRDLISLIMNERIKAATESVKGVLSVGDPTAMRKEIST
LARKGKLDDAFILLLQANLEQAKKANAKQAVDVLSLALNHAQSVKDVQLD
PEVRLIRALLRTEDVEVRSKMLMDSFQSQGSVTLIDGSATSGIAVDGKKF
VVALRRLIEEFGNVDQSFVLKLSKIGEESEAVARKLYDMEDKDLQDLQEE
AFHKRTVSVWDLERYEVEQEIEGRKAAWEGRLGEIPEGFGDDGKMQV*

mRNA from alignment at tig00000088_pilon:336437..337780+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8567.t1 ID=Gchil8567.t1|Name=Gchil8567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at tig00000088_pilon:336437..337780+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATTTGCTGGTGTTCCTCTCGTGCCCTTCAGGGCTGATTCCTCACT
GTTTACCCCGCGACTAATTTCATTTCGTCCCAGGGTCACGGACTATCCCT
GTTCTCGGATCATGCCGCGTGCTCAATTGGTGGGAATGCCCGAAGGCTTT
GGACAGAAAAATGTGGATAGCAATGACCTTGAAACCCTTTTGGCTGAGAT
GCGCTATTCGGACCCCTCAAGGCTACCTGCCATCGTGCAGAACAATCTTG
AGCAGCTTGATGAGGACTTTTATCGATTCTTAGAAAATAAGATTAACGCA
TCCGCAGACTTAGAAGAACGCGATACACTTCGTATTTTGCAAAGTGCTAT
AACAGAAGTTATGAAAGAATTGCTCGATGCTATTCCATCGGATGAGATGG
AGGCCGCCATGAATGGATCTGCAAACTCCACTATAGATGTCAGCTCAAAT
GAAGACATTGCTGCCGCCACATATGATCAGCTTATCAATGACATTGTGAA
AGCGAGGAATACAGATAATCCATATTCATTGAAGATCTCCGTCGAAGCGG
CATATCCACGAATAGACCTTCGTCTTTTGGAAAGATTGAATGAACGCATT
TCGGCCAAAAGTTCTGATGTTGAAGCTCTGACTGACATGCGAGATCTTAT
ATCGCTCATCATGAATGAACGCATTAAGGCAGCGACTGAAAGCGTCAAGG
GCGTTCTCTCGGTCGGTGATCCTACAGCAATGAGAAAAGAAATAAGTACA
CTTGCGCGGAAAGGAAAACTAGATGACGCCTTTATCCTTTTACTGCAAGC
GAATCTTGAACAGGCGAAGAAAGCCAATGCCAAACAAGCAGTGGATGTCT
TGTCTTTGGCACTCAATCATGCACAATCTGTAAAGGATGTGCAACTTGAT
CCGGAAGTTCGGTTGATTCGTGCATTGTTGCGCACAGAGGACGTCGAAGT
AAGGTCTAAGATGTTGATGGACAGTTTTCAGTCTCAAGGCTCAGTCACAC
TCATAGATGGATCTGCAACATCCGGCATCGCCGTCGATGGAAAGAAGTTT
GTCGTTGCTCTTAGAAGACTCATCGAAGAATTCGGCAATGTTGACCAAAG
TTTCGTCCTGAAATTGTCGAAGATTGGGGAAGAATCAGAAGCTGTTGCAC
GAAAATTGTATGATATGGAGGATAAGGATCTTCAGGACCTGCAAGAAGAG
GCTTTCCACAAACGAACTGTATCTGTGTGGGACTTGGAAAGATACGAAGT
TGAGCAGGAGATTGAAGGTCGCAAGGCCGCATGGGAGGGTAGATTAGGTG
AAATACCAGAAGGCTTCGGCGACGATGGAAAAATGCAAGTCTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:336437..337780+

>Gchil8567.t1 ID=Gchil8567.t1|Name=Gchil8567.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1344bp|location=Sequence derived from alignment at tig00000088_pilon:336437..337780+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCATTTGCTGGTGTTCCTCTCGTGCCCTTCAGGGCTGATTCCTCACT
GTTTACCCCGCGACTAATTTCATTTCGTCCCAGGGTCACGGACTATCCCT
GTTCTCGGATCATGCCGCGTGCTCAATTGGTGGGAATGCCCGAAGGCTTT
GGACAGAAAAATGTGGATAGCAATGACCTTGAAACCCTTTTGGCTGAGAT
GCGCTATTCGGACCCCTCAAGGCTACCTGCCATCGTGCAGAACAATCTTG
AGCAGCTTGATGAGGACTTTTATCGATTCTTAGAAAATAAGATTAACGCA
TCCGCAGACTTAGAAGAACGCGATACACTTCGTATTTTGCAAAGTGCTAT
AACAGAAGTTATGAAAGAATTGCTCGATGCTATTCCATCGGATGAGATGG
AGGCCGCCATGAATGGATCTGCAAACTCCACTATAGATGTCAGCTCAAAT
GAAGACATTGCTGCCGCCACATATGATCAGCTTATCAATGACATTGTGAA
AGCGAGGAATACAGATAATCCATATTCATTGAAGATCTCCGTCGAAGCGG
CATATCCACGAATAGACCTTCGTCTTTTGGAAAGATTGAATGAACGCATT
TCGGCCAAAAGTTCTGATGTTGAAGCTCTGACTGACATGCGAGATCTTAT
ATCGCTCATCATGAATGAACGCATTAAGGCAGCGACTGAAAGCGTCAAGG
GCGTTCTCTCGGTCGGTGATCCTACAGCAATGAGAAAAGAAATAAGTACA
CTTGCGCGGAAAGGAAAACTAGATGACGCCTTTATCCTTTTACTGCAAGC
GAATCTTGAACAGGCGAAGAAAGCCAATGCCAAACAAGCAGTGGATGTCT
TGTCTTTGGCACTCAATCATGCACAATCTGTAAAGGATGTGCAACTTGAT
CCGGAAGTTCGGTTGATTCGTGCATTGTTGCGCACAGAGGACGTCGAAGT
AAGGTCTAAGATGTTGATGGACAGTTTTCAGTCTCAAGGCTCAGTCACAC
TCATAGATGGATCTGCAACATCCGGCATCGCCGTCGATGGAAAGAAGTTT
GTCGTTGCTCTTAGAAGACTCATCGAAGAATTCGGCAATGTTGACCAAAG
TTTCGTCCTGAAATTGTCGAAGATTGGGGAAGAATCAGAAGCTGTTGCAC
GAAAATTGTATGATATGGAGGATAAGGATCTTCAGGACCTGCAAGAAGAG
GCTTTCCACAAACGAACTGTATCTGTGTGGGACTTGGAAAGATACGAAGT
TGAGCAGGAGATTGAAGGTCGCAAGGCCGCATGGGAGGGTAGATTAGGTG
AAATACCAGAAGGCTTCGGCGACGATGGAAAAATGCAAGTCTAG