Gchil8566.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8566.t1
Unique NameGchil8566.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length568
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:334247..335950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0231317
PFAMsHGTP_anticodon,ProRS-C_1,tRNA-synt_2b
Max annot lvl554915|Amoebozoa
KEGG rclassRC00055,RC00523
KEGG koko:K01881
KEGG ReactionR03661
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue2.68e-234
EggNOG OGsCOG0442@1|root,KOG4163@2759|Eukaryota,3X83Q@554915|Amoebozoa
EC6.1.1.15
DescriptionProlyl-tRNA synthetase
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8566Gchil8566Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 334247..335950 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8566.t1.stop1Gchil8566.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 334247..334249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8566.t1.CDS1Gchil8566.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 334247..335950 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8566.t1.exon1Gchil8566.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 334247..335950 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8566.t1.start1Gchil8566.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 335948..335950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8566.t1Gchil8566.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 334247..335950 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8566.t1 ID=Gchil8566.t1|Name=Gchil8566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=568bp
MATAEEAMLGLNVSETPAVDADIQAQRKAAKEQKKAAKAAKAAEKQKKKE
KAAAGIKGSNRDGMEISKSEDFGAWFSQLVTKTEMIEFYDISGCYILRPW
SFAMWDMIHQYFDAEIKKLGVQNAYFPLFVSEKRLTTEEDHIEGFAAEVA
WVTRSGQSELEEPIAVRPTSETIMYPAYAKWIRSHRDLPLKLNQWSNVVR
WEFKYPTPFIRSREFLWQEGHTAFATKEEADVEVLQILDLYRSVYEDLLA
VPVIKGKKSEKEKFAGGLYTTTIEGFIPSNGRAIQAATSHCLGQNFSKMF
KIEFEAGENKKQYVWQNSWGLTTRSIGVMAMVHGDDKGLVLPPRIAPIQV
VVVPIVRKGLEKMVQDAASALTEELKTAGIRVKPDLRDDKNPGWKFNYWE
LKGVPLRLELGPRDIEAGKVIGSRRSDAEKLTFERDDICESVKTALEDIH
ALIFDKARALRDEKIVKVLEWIDFVPTLDNRTMVLAPWCQRTECEEDVKE
KSGQESQQKLDQEGEVDKRALSGSAKTLCIPFEEEIAKLGIEKMPNGSKC
FACEQKAVAYTLWGRSY*
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spliced messenger RNA

>Gchil8566.t1 ID=Gchil8566.t1|Name=Gchil8566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at tig00000088_pilon:334247..335950- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTACGGCAGAAGAAGCCATGTTAGGGCTCAATGTCTCCGAGACCCC
TGCGGTAGATGCAGATATTCAGGCGCAGCGCAAAGCGGCCAAAGAGCAGA
AGAAAGCAGCCAAAGCTGCGAAGGCAGCAGAAAAACAGAAAAAGAAGGAA
AAAGCTGCCGCAGGTATAAAGGGATCCAATCGAGACGGCATGGAGATTTC
GAAATCGGAAGACTTTGGTGCGTGGTTTTCCCAATTGGTTACCAAGACCG
AAATGATTGAGTTTTATGATATCTCTGGTTGCTACATTCTTCGCCCGTGG
AGTTTTGCAATGTGGGATATGATACACCAATATTTTGATGCTGAGATCAA
GAAGCTTGGAGTGCAAAACGCCTACTTTCCGTTATTTGTTTCCGAGAAAC
GTCTGACAACGGAAGAAGATCATATAGAAGGTTTTGCTGCGGAAGTGGCT
TGGGTGACGCGTAGTGGCCAAAGTGAGTTGGAGGAACCGATCGCTGTGCG
TCCCACTTCGGAGACAATAATGTACCCGGCGTACGCCAAGTGGATCAGAA
GCCATAGGGATCTTCCACTAAAACTAAATCAGTGGTCAAACGTTGTGCGT
TGGGAGTTTAAGTATCCCACTCCGTTCATTCGTTCCAGAGAGTTCTTATG
GCAAGAGGGCCACACAGCGTTTGCGACGAAAGAAGAAGCTGATGTTGAAG
TTTTACAGATCCTTGATCTGTACCGTTCAGTGTACGAAGACCTGCTTGCA
GTCCCAGTCATCAAAGGGAAAAAATCAGAGAAGGAAAAGTTTGCGGGCGG
TCTATACACCACAACCATAGAAGGTTTTATACCGTCAAACGGGCGAGCCA
TTCAGGCCGCAACGAGCCATTGTCTCGGCCAAAACTTCTCCAAAATGTTC
AAGATAGAGTTCGAAGCTGGAGAAAATAAGAAGCAGTACGTATGGCAGAA
CTCCTGGGGACTAACGACTCGTTCGATTGGAGTTATGGCCATGGTCCACG
GAGATGACAAGGGTCTCGTACTCCCTCCGCGTATAGCCCCAATACAAGTT
GTGGTCGTTCCCATTGTGCGCAAAGGATTGGAAAAAATGGTACAAGATGC
CGCCAGCGCCCTTACAGAGGAGCTCAAAACCGCTGGCATTCGAGTAAAAC
CCGATCTTAGGGACGATAAGAACCCCGGGTGGAAGTTCAACTACTGGGAG
TTGAAGGGAGTGCCGCTCCGCCTCGAACTGGGGCCCCGTGATATTGAGGC
AGGGAAAGTAATCGGCAGCAGGCGTTCCGACGCTGAAAAGCTCACATTCG
AAAGAGATGATATCTGCGAAAGTGTGAAAACTGCATTGGAAGACATTCAC
GCTCTTATATTCGACAAAGCACGCGCTCTTCGGGATGAAAAAATTGTGAA
GGTTTTGGAATGGATAGACTTCGTTCCGACTCTCGATAACCGAACCATGG
TGCTTGCGCCTTGGTGCCAACGAACAGAATGTGAGGAAGACGTGAAGGAG
AAGAGTGGTCAGGAAAGTCAGCAAAAGTTGGATCAAGAGGGTGAGGTCGA
TAAGCGGGCTTTGTCTGGCTCCGCAAAAACGTTGTGTATTCCATTTGAGG
AAGAGATTGCAAAGCTTGGTATCGAGAAAATGCCGAATGGCTCAAAATGT
TTTGCTTGTGAACAAAAAGCGGTAGCGTACACACTGTGGGGCCGAAGTTA
TTAA
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protein sequence of Gchil8566.t1

>Gchil8566.t1 ID=Gchil8566.t1|Name=Gchil8566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=568bp
MATAEEAMLGLNVSETPAVDADIQAQRKAAKEQKKAAKAAKAAEKQKKKE
KAAAGIKGSNRDGMEISKSEDFGAWFSQLVTKTEMIEFYDISGCYILRPW
SFAMWDMIHQYFDAEIKKLGVQNAYFPLFVSEKRLTTEEDHIEGFAAEVA
WVTRSGQSELEEPIAVRPTSETIMYPAYAKWIRSHRDLPLKLNQWSNVVR
WEFKYPTPFIRSREFLWQEGHTAFATKEEADVEVLQILDLYRSVYEDLLA
VPVIKGKKSEKEKFAGGLYTTTIEGFIPSNGRAIQAATSHCLGQNFSKMF
KIEFEAGENKKQYVWQNSWGLTTRSIGVMAMVHGDDKGLVLPPRIAPIQV
VVVPIVRKGLEKMVQDAASALTEELKTAGIRVKPDLRDDKNPGWKFNYWE
LKGVPLRLELGPRDIEAGKVIGSRRSDAEKLTFERDDICESVKTALEDIH
ALIFDKARALRDEKIVKVLEWIDFVPTLDNRTMVLAPWCQRTECEEDVKE
KSGQESQQKLDQEGEVDKRALSGSAKTLCIPFEEEIAKLGIEKMPNGSKC
FACEQKAVAYTLWGRSY*
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mRNA from alignment at tig00000088_pilon:334247..335950-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8566.t1 ID=Gchil8566.t1|Name=Gchil8566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at tig00000088_pilon:334247..335950- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACGGCAGAAGAAGCCATGTTAGGGCTCAATGTCTCCGAGACCCC
TGCGGTAGATGCAGATATTCAGGCGCAGCGCAAAGCGGCCAAAGAGCAGA
AGAAAGCAGCCAAAGCTGCGAAGGCAGCAGAAAAACAGAAAAAGAAGGAA
AAAGCTGCCGCAGGTATAAAGGGATCCAATCGAGACGGCATGGAGATTTC
GAAATCGGAAGACTTTGGTGCGTGGTTTTCCCAATTGGTTACCAAGACCG
AAATGATTGAGTTTTATGATATCTCTGGTTGCTACATTCTTCGCCCGTGG
AGTTTTGCAATGTGGGATATGATACACCAATATTTTGATGCTGAGATCAA
GAAGCTTGGAGTGCAAAACGCCTACTTTCCGTTATTTGTTTCCGAGAAAC
GTCTGACAACGGAAGAAGATCATATAGAAGGTTTTGCTGCGGAAGTGGCT
TGGGTGACGCGTAGTGGCCAAAGTGAGTTGGAGGAACCGATCGCTGTGCG
TCCCACTTCGGAGACAATAATGTACCCGGCGTACGCCAAGTGGATCAGAA
GCCATAGGGATCTTCCACTAAAACTAAATCAGTGGTCAAACGTTGTGCGT
TGGGAGTTTAAGTATCCCACTCCGTTCATTCGTTCCAGAGAGTTCTTATG
GCAAGAGGGCCACACAGCGTTTGCGACGAAAGAAGAAGCTGATGTTGAAG
TTTTACAGATCCTTGATCTGTACCGTTCAGTGTACGAAGACCTGCTTGCA
GTCCCAGTCATCAAAGGGAAAAAATCAGAGAAGGAAAAGTTTGCGGGCGG
TCTATACACCACAACCATAGAAGGTTTTATACCGTCAAACGGGCGAGCCA
TTCAGGCCGCAACGAGCCATTGTCTCGGCCAAAACTTCTCCAAAATGTTC
AAGATAGAGTTCGAAGCTGGAGAAAATAAGAAGCAGTACGTATGGCAGAA
CTCCTGGGGACTAACGACTCGTTCGATTGGAGTTATGGCCATGGTCCACG
GAGATGACAAGGGTCTCGTACTCCCTCCGCGTATAGCCCCAATACAAGTT
GTGGTCGTTCCCATTGTGCGCAAAGGATTGGAAAAAATGGTACAAGATGC
CGCCAGCGCCCTTACAGAGGAGCTCAAAACCGCTGGCATTCGAGTAAAAC
CCGATCTTAGGGACGATAAGAACCCCGGGTGGAAGTTCAACTACTGGGAG
TTGAAGGGAGTGCCGCTCCGCCTCGAACTGGGGCCCCGTGATATTGAGGC
AGGGAAAGTAATCGGCAGCAGGCGTTCCGACGCTGAAAAGCTCACATTCG
AAAGAGATGATATCTGCGAAAGTGTGAAAACTGCATTGGAAGACATTCAC
GCTCTTATATTCGACAAAGCACGCGCTCTTCGGGATGAAAAAATTGTGAA
GGTTTTGGAATGGATAGACTTCGTTCCGACTCTCGATAACCGAACCATGG
TGCTTGCGCCTTGGTGCCAACGAACAGAATGTGAGGAAGACGTGAAGGAG
AAGAGTGGTCAGGAAAGTCAGCAAAAGTTGGATCAAGAGGGTGAGGTCGA
TAAGCGGGCTTTGTCTGGCTCCGCAAAAACGTTGTGTATTCCATTTGAGG
AAGAGATTGCAAAGCTTGGTATCGAGAAAATGCCGAATGGCTCAAAATGT
TTTGCTTGTGAACAAAAAGCGGTAGCGTACACACTGTGGGGCCGAAGTTA
TTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:334247..335950-

>Gchil8566.t1 ID=Gchil8566.t1|Name=Gchil8566.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1704bp|location=Sequence derived from alignment at tig00000088_pilon:334247..335950- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTACGGCAGAAGAAGCCATGTTAGGGCTCAATGTCTCCGAGACCCC
TGCGGTAGATGCAGATATTCAGGCGCAGCGCAAAGCGGCCAAAGAGCAGA
AGAAAGCAGCCAAAGCTGCGAAGGCAGCAGAAAAACAGAAAAAGAAGGAA
AAAGCTGCCGCAGGTATAAAGGGATCCAATCGAGACGGCATGGAGATTTC
GAAATCGGAAGACTTTGGTGCGTGGTTTTCCCAATTGGTTACCAAGACCG
AAATGATTGAGTTTTATGATATCTCTGGTTGCTACATTCTTCGCCCGTGG
AGTTTTGCAATGTGGGATATGATACACCAATATTTTGATGCTGAGATCAA
GAAGCTTGGAGTGCAAAACGCCTACTTTCCGTTATTTGTTTCCGAGAAAC
GTCTGACAACGGAAGAAGATCATATAGAAGGTTTTGCTGCGGAAGTGGCT
TGGGTGACGCGTAGTGGCCAAAGTGAGTTGGAGGAACCGATCGCTGTGCG
TCCCACTTCGGAGACAATAATGTACCCGGCGTACGCCAAGTGGATCAGAA
GCCATAGGGATCTTCCACTAAAACTAAATCAGTGGTCAAACGTTGTGCGT
TGGGAGTTTAAGTATCCCACTCCGTTCATTCGTTCCAGAGAGTTCTTATG
GCAAGAGGGCCACACAGCGTTTGCGACGAAAGAAGAAGCTGATGTTGAAG
TTTTACAGATCCTTGATCTGTACCGTTCAGTGTACGAAGACCTGCTTGCA
GTCCCAGTCATCAAAGGGAAAAAATCAGAGAAGGAAAAGTTTGCGGGCGG
TCTATACACCACAACCATAGAAGGTTTTATACCGTCAAACGGGCGAGCCA
TTCAGGCCGCAACGAGCCATTGTCTCGGCCAAAACTTCTCCAAAATGTTC
AAGATAGAGTTCGAAGCTGGAGAAAATAAGAAGCAGTACGTATGGCAGAA
CTCCTGGGGACTAACGACTCGTTCGATTGGAGTTATGGCCATGGTCCACG
GAGATGACAAGGGTCTCGTACTCCCTCCGCGTATAGCCCCAATACAAGTT
GTGGTCGTTCCCATTGTGCGCAAAGGATTGGAAAAAATGGTACAAGATGC
CGCCAGCGCCCTTACAGAGGAGCTCAAAACCGCTGGCATTCGAGTAAAAC
CCGATCTTAGGGACGATAAGAACCCCGGGTGGAAGTTCAACTACTGGGAG
TTGAAGGGAGTGCCGCTCCGCCTCGAACTGGGGCCCCGTGATATTGAGGC
AGGGAAAGTAATCGGCAGCAGGCGTTCCGACGCTGAAAAGCTCACATTCG
AAAGAGATGATATCTGCGAAAGTGTGAAAACTGCATTGGAAGACATTCAC
GCTCTTATATTCGACAAAGCACGCGCTCTTCGGGATGAAAAAATTGTGAA
GGTTTTGGAATGGATAGACTTCGTTCCGACTCTCGATAACCGAACCATGG
TGCTTGCGCCTTGGTGCCAACGAACAGAATGTGAGGAAGACGTGAAGGAG
AAGAGTGGTCAGGAAAGTCAGCAAAAGTTGGATCAAGAGGGTGAGGTCGA
TAAGCGGGCTTTGTCTGGCTCCGCAAAAACGTTGTGTATTCCATTTGAGG
AAGAGATTGCAAAGCTTGGTATCGAGAAAATGCCGAATGGCTCAAAATGT
TTTGCTTGTGAACAAAAAGCGGTAGCGTACACACTGTGGGGCCGAAGTTA
TTAA
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