Gchil8565.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8565.t1
Unique NameGchil8565.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:295416..296228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8565Gchil8565Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 295416..296228 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8565.t1.start1Gchil8565.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 295416..295418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8565.t1.CDS1Gchil8565.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 295416..296228 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8565.t1.exon1Gchil8565.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 295416..296228 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8565.t1.stop1Gchil8565.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 296226..296228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8565.t1Gchil8565.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 295416..296228 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8565.t1 ID=Gchil8565.t1|Name=Gchil8565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=271bp
MTSPFVRPTGPKSALDVQNARSLHLLMLLQCFEFMIAENTRFKSFLLIQR
DLLGFVSPTAATPNRLRDAALRPFKNLSQFSANYFDHLSHENHAMHQALL
RRKLALEAYRNEMNTMQNNSKNDAAKTRVGPPSAPPNPQNDTRTFQQKVS
KRTERFTAIAKDSEAMLKELANTVIMSFRVACAPAEAASDAVTKLPPTSM
KNFVKNVERNVGELPGLPTFPAPLVRRYGLEPIPDASSLAAAETRFSPFL
TDVNCAAILQRSNPKRLDGS*
back to top

spliced messenger RNA

>Gchil8565.t1 ID=Gchil8565.t1|Name=Gchil8565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000088_pilon:295416..296228+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTCCATTTGTCCGGCCGACTGGACCAAAATCAGCTTTGGACGT
TCAGAATGCACGATCTCTGCATTTATTGATGTTGTTACAATGCTTCGAAT
TTATGATTGCAGAAAACACTCGTTTTAAGAGCTTTCTCCTGATCCAAAGA
GATCTGCTGGGATTTGTGTCGCCTACGGCGGCAACCCCTAATCGACTGCG
AGATGCGGCCCTTCGTCCTTTTAAGAATCTATCGCAGTTCTCTGCCAATT
ACTTCGACCATCTTTCTCATGAAAACCATGCTATGCATCAGGCCCTTTTG
AGAAGGAAACTTGCTTTAGAGGCATACCGAAATGAGATGAATACAATGCA
AAACAATTCTAAAAACGACGCTGCCAAAACTCGTGTAGGTCCACCTTCAG
CTCCACCGAACCCTCAAAATGATACACGTACATTCCAACAAAAAGTTTCT
AAGCGTACTGAAAGATTCACCGCCATTGCGAAAGATTCGGAGGCCATGCT
AAAAGAACTTGCGAATACTGTCATTATGTCTTTTCGGGTTGCTTGCGCAC
CGGCAGAAGCTGCATCTGATGCCGTGACTAAGCTACCCCCCACGTCGATG
AAAAATTTTGTCAAGAATGTCGAACGGAATGTAGGAGAGCTCCCCGGGCT
CCCAACGTTTCCGGCGCCACTGGTTCGCAGATATGGGCTTGAGCCGATTC
CTGACGCAAGTTCCCTGGCCGCTGCTGAAACTCGGTTCAGCCCTTTTCTC
ACAGATGTGAATTGTGCTGCCATTTTGCAACGCAGCAATCCTAAAAGGCT
GGATGGTTCGTAG
back to top

protein sequence of Gchil8565.t1

>Gchil8565.t1 ID=Gchil8565.t1|Name=Gchil8565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=271bp
MTSPFVRPTGPKSALDVQNARSLHLLMLLQCFEFMIAENTRFKSFLLIQR
DLLGFVSPTAATPNRLRDAALRPFKNLSQFSANYFDHLSHENHAMHQALL
RRKLALEAYRNEMNTMQNNSKNDAAKTRVGPPSAPPNPQNDTRTFQQKVS
KRTERFTAIAKDSEAMLKELANTVIMSFRVACAPAEAASDAVTKLPPTSM
KNFVKNVERNVGELPGLPTFPAPLVRRYGLEPIPDASSLAAAETRFSPFL
TDVNCAAILQRSNPKRLDGS*
back to top

mRNA from alignment at tig00000088_pilon:295416..296228+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8565.t1 ID=Gchil8565.t1|Name=Gchil8565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000088_pilon:295416..296228+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCTCCATTTGTCCGGCCGACTGGACCAAAATCAGCTTTGGACGT
TCAGAATGCACGATCTCTGCATTTATTGATGTTGTTACAATGCTTCGAAT
TTATGATTGCAGAAAACACTCGTTTTAAGAGCTTTCTCCTGATCCAAAGA
GATCTGCTGGGATTTGTGTCGCCTACGGCGGCAACCCCTAATCGACTGCG
AGATGCGGCCCTTCGTCCTTTTAAGAATCTATCGCAGTTCTCTGCCAATT
ACTTCGACCATCTTTCTCATGAAAACCATGCTATGCATCAGGCCCTTTTG
AGAAGGAAACTTGCTTTAGAGGCATACCGAAATGAGATGAATACAATGCA
AAACAATTCTAAAAACGACGCTGCCAAAACTCGTGTAGGTCCACCTTCAG
CTCCACCGAACCCTCAAAATGATACACGTACATTCCAACAAAAAGTTTCT
AAGCGTACTGAAAGATTCACCGCCATTGCGAAAGATTCGGAGGCCATGCT
AAAAGAACTTGCGAATACTGTCATTATGTCTTTTCGGGTTGCTTGCGCAC
CGGCAGAAGCTGCATCTGATGCCGTGACTAAGCTACCCCCCACGTCGATG
AAAAATTTTGTCAAGAATGTCGAACGGAATGTAGGAGAGCTCCCCGGGCT
CCCAACGTTTCCGGCGCCACTGGTTCGCAGATATGGGCTTGAGCCGATTC
CTGACGCAAGTTCCCTGGCCGCTGCTGAAACTCGGTTCAGCCCTTTTCTC
ACAGATGTGAATTGTGCTGCCATTTTGCAACGCAGCAATCCTAAAAGGCT
GGATGGTTCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000088_pilon:295416..296228+

>Gchil8565.t1 ID=Gchil8565.t1|Name=Gchil8565.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000088_pilon:295416..296228+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCTCCATTTGTCCGGCCGACTGGACCAAAATCAGCTTTGGACGT
TCAGAATGCACGATCTCTGCATTTATTGATGTTGTTACAATGCTTCGAAT
TTATGATTGCAGAAAACACTCGTTTTAAGAGCTTTCTCCTGATCCAAAGA
GATCTGCTGGGATTTGTGTCGCCTACGGCGGCAACCCCTAATCGACTGCG
AGATGCGGCCCTTCGTCCTTTTAAGAATCTATCGCAGTTCTCTGCCAATT
ACTTCGACCATCTTTCTCATGAAAACCATGCTATGCATCAGGCCCTTTTG
AGAAGGAAACTTGCTTTAGAGGCATACCGAAATGAGATGAATACAATGCA
AAACAATTCTAAAAACGACGCTGCCAAAACTCGTGTAGGTCCACCTTCAG
CTCCACCGAACCCTCAAAATGATACACGTACATTCCAACAAAAAGTTTCT
AAGCGTACTGAAAGATTCACCGCCATTGCGAAAGATTCGGAGGCCATGCT
AAAAGAACTTGCGAATACTGTCATTATGTCTTTTCGGGTTGCTTGCGCAC
CGGCAGAAGCTGCATCTGATGCCGTGACTAAGCTACCCCCCACGTCGATG
AAAAATTTTGTCAAGAATGTCGAACGGAATGTAGGAGAGCTCCCCGGGCT
CCCAACGTTTCCGGCGCCACTGGTTCGCAGATATGGGCTTGAGCCGATTC
CTGACGCAAGTTCCCTGGCCGCTGCTGAAACTCGGTTCAGCCCTTTTCTC
ACAGATGTGAATTGTGCTGCCATTTTGCAACGCAGCAATCCTAAAAGGCT
GGATGGTTCGTAG
back to top