Gchil8561.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8561.t1
Unique NameGchil8561.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:287752..288768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010533551.1
PFAMsUPF0160
Max annot lvl35493|Streptophyta
Evalue1.12e-107
EggNOG OGsCOG4286@1|root,KOG2948@2759|Eukaryota,37MFS@33090|Viridiplantae,3GAGR@35493|Streptophyta,3HX7I@3699|Brassicales
DescriptionUncharacterised protein family (UPF0160)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8561Gchil8561Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 287752..288768 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8561.t1.stop1Gchil8561.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 287752..287754 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8561.t1.CDS1Gchil8561.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 287752..288768 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8561.t1.exon1Gchil8561.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 287752..288768 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8561.t1.start1Gchil8561.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 288766..288768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8561.t1Gchil8561.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 287752..288768 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8561.t1 ID=Gchil8561.t1|Name=Gchil8561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=339bp
MTATERKTIATHDGTFHCDEVLACYMLKNHTVLFNKADIMRTRDPLRLEE
AQIVVDVGSVYDPEARRFDHHQRGFCTTFSSGGKRSRTKLSSAGLIYKHF
GTEVIRGVASVNGIELKDEDVTAVYHKFYDSFMEAIDAVDNGIMMYESSQ
PPKYESSTDLSSRVAKLNAEWYEESPDQDANFVKAMEIAGKEMDDCILQI
LRSWLPARSIISEAMKQRFTHRKSGAILVLLKWAPWKDHLFSIEEEDIQE
GKERILYVVYRDMTGTSWRVQCVPVAKGSFQSRKPLPGPWRGLRDEELSS
LTGIVDCVFAHASGFIGGNKSFDGAMEMAKQALECELS*
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spliced messenger RNA

>Gchil8561.t1 ID=Gchil8561.t1|Name=Gchil8561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000088_pilon:287752..288768- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCCACGGAACGTAAGACGATTGCAACCCATGATGGAACTTTTCA
CTGTGATGAAGTACTGGCCTGCTATATGCTAAAAAACCATACCGTGTTAT
TCAACAAGGCTGACATCATGCGCACCCGCGACCCATTACGACTCGAGGAA
GCACAGATTGTCGTTGACGTTGGTTCTGTGTATGACCCGGAGGCGAGAAG
ATTCGATCATCATCAAAGAGGTTTCTGCACAACCTTTTCCTCAGGCGGGA
AGCGATCGCGTACAAAGCTATCCAGCGCAGGTTTGATTTACAAACATTTT
GGAACAGAAGTAATTCGCGGCGTGGCAAGCGTCAATGGCATTGAACTAAA
GGATGAGGATGTGACAGCAGTATATCATAAATTCTACGATAGTTTCATGG
AAGCCATCGATGCTGTAGACAACGGGATCATGATGTATGAATCCTCTCAG
CCTCCAAAATATGAATCTTCAACAGATCTTAGCTCACGTGTGGCAAAACT
GAATGCAGAATGGTATGAAGAAAGTCCGGATCAAGATGCAAATTTTGTCA
AAGCAATGGAGATCGCTGGCAAAGAAATGGACGATTGCATATTGCAGATA
CTGAGGAGCTGGTTACCGGCACGCTCGATAATATCCGAAGCCATGAAACA
AAGATTTACCCACCGCAAGAGCGGGGCAATACTCGTCTTGTTAAAATGGG
CCCCTTGGAAAGATCATTTGTTCTCCATCGAGGAAGAAGATATACAGGAG
GGGAAAGAGAGGATTTTATATGTTGTTTACAGAGACATGACCGGTACTTC
GTGGCGTGTTCAATGCGTTCCAGTAGCAAAAGGCTCTTTCCAATCAAGAA
AACCACTTCCCGGGCCATGGCGCGGTTTAAGAGATGAGGAATTGTCATCT
TTGACTGGTATCGTTGATTGCGTTTTCGCTCACGCTTCAGGATTCATTGG
AGGGAACAAGAGTTTTGATGGTGCGATGGAAATGGCGAAACAAGCCCTGG
AATGTGAACTGTCGTAA
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protein sequence of Gchil8561.t1

>Gchil8561.t1 ID=Gchil8561.t1|Name=Gchil8561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=339bp
MTATERKTIATHDGTFHCDEVLACYMLKNHTVLFNKADIMRTRDPLRLEE
AQIVVDVGSVYDPEARRFDHHQRGFCTTFSSGGKRSRTKLSSAGLIYKHF
GTEVIRGVASVNGIELKDEDVTAVYHKFYDSFMEAIDAVDNGIMMYESSQ
PPKYESSTDLSSRVAKLNAEWYEESPDQDANFVKAMEIAGKEMDDCILQI
LRSWLPARSIISEAMKQRFTHRKSGAILVLLKWAPWKDHLFSIEEEDIQE
GKERILYVVYRDMTGTSWRVQCVPVAKGSFQSRKPLPGPWRGLRDEELSS
LTGIVDCVFAHASGFIGGNKSFDGAMEMAKQALECELS*
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mRNA from alignment at tig00000088_pilon:287752..288768-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8561.t1 ID=Gchil8561.t1|Name=Gchil8561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00000088_pilon:287752..288768- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCCACGGAACGTAAGACGATTGCAACCCATGATGGAACTTTTCA
CTGTGATGAAGTACTGGCCTGCTATATGCTAAAAAACCATACCGTGTTAT
TCAACAAGGCTGACATCATGCGCACCCGCGACCCATTACGACTCGAGGAA
GCACAGATTGTCGTTGACGTTGGTTCTGTGTATGACCCGGAGGCGAGAAG
ATTCGATCATCATCAAAGAGGTTTCTGCACAACCTTTTCCTCAGGCGGGA
AGCGATCGCGTACAAAGCTATCCAGCGCAGGTTTGATTTACAAACATTTT
GGAACAGAAGTAATTCGCGGCGTGGCAAGCGTCAATGGCATTGAACTAAA
GGATGAGGATGTGACAGCAGTATATCATAAATTCTACGATAGTTTCATGG
AAGCCATCGATGCTGTAGACAACGGGATCATGATGTATGAATCCTCTCAG
CCTCCAAAATATGAATCTTCAACAGATCTTAGCTCACGTGTGGCAAAACT
GAATGCAGAATGGTATGAAGAAAGTCCGGATCAAGATGCAAATTTTGTCA
AAGCAATGGAGATCGCTGGCAAAGAAATGGACGATTGCATATTGCAGATA
CTGAGGAGCTGGTTACCGGCACGCTCGATAATATCCGAAGCCATGAAACA
AAGATTTACCCACCGCAAGAGCGGGGCAATACTCGTCTTGTTAAAATGGG
CCCCTTGGAAAGATCATTTGTTCTCCATCGAGGAAGAAGATATACAGGAG
GGGAAAGAGAGGATTTTATATGTTGTTTACAGAGACATGACCGGTACTTC
GTGGCGTGTTCAATGCGTTCCAGTAGCAAAAGGCTCTTTCCAATCAAGAA
AACCACTTCCCGGGCCATGGCGCGGTTTAAGAGATGAGGAATTGTCATCT
TTGACTGGTATCGTTGATTGCGTTTTCGCTCACGCTTCAGGATTCATTGG
AGGGAACAAGAGTTTTGATGGTGCGATGGAAATGGCGAAACAAGCCCTGG
AATGTGAACTGTCGTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:287752..288768-

>Gchil8561.t1 ID=Gchil8561.t1|Name=Gchil8561.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00000088_pilon:287752..288768- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCCACGGAACGTAAGACGATTGCAACCCATGATGGAACTTTTCA
CTGTGATGAAGTACTGGCCTGCTATATGCTAAAAAACCATACCGTGTTAT
TCAACAAGGCTGACATCATGCGCACCCGCGACCCATTACGACTCGAGGAA
GCACAGATTGTCGTTGACGTTGGTTCTGTGTATGACCCGGAGGCGAGAAG
ATTCGATCATCATCAAAGAGGTTTCTGCACAACCTTTTCCTCAGGCGGGA
AGCGATCGCGTACAAAGCTATCCAGCGCAGGTTTGATTTACAAACATTTT
GGAACAGAAGTAATTCGCGGCGTGGCAAGCGTCAATGGCATTGAACTAAA
GGATGAGGATGTGACAGCAGTATATCATAAATTCTACGATAGTTTCATGG
AAGCCATCGATGCTGTAGACAACGGGATCATGATGTATGAATCCTCTCAG
CCTCCAAAATATGAATCTTCAACAGATCTTAGCTCACGTGTGGCAAAACT
GAATGCAGAATGGTATGAAGAAAGTCCGGATCAAGATGCAAATTTTGTCA
AAGCAATGGAGATCGCTGGCAAAGAAATGGACGATTGCATATTGCAGATA
CTGAGGAGCTGGTTACCGGCACGCTCGATAATATCCGAAGCCATGAAACA
AAGATTTACCCACCGCAAGAGCGGGGCAATACTCGTCTTGTTAAAATGGG
CCCCTTGGAAAGATCATTTGTTCTCCATCGAGGAAGAAGATATACAGGAG
GGGAAAGAGAGGATTTTATATGTTGTTTACAGAGACATGACCGGTACTTC
GTGGCGTGTTCAATGCGTTCCAGTAGCAAAAGGCTCTTTCCAATCAAGAA
AACCACTTCCCGGGCCATGGCGCGGTTTAAGAGATGAGGAATTGTCATCT
TTGACTGGTATCGTTGATTGCGTTTTCGCTCACGCTTCAGGATTCATTGG
AGGGAACAAGAGTTTTGATGGTGCGATGGAAATGGCGAAACAAGCCCTGG
AATGTGAACTGTCGTAA
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