Gchil856.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil856.t1
Unique NameGchil856.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length254
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:531357..532118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil856Gchil856Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 531357..532118 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil856.t1.start1Gchil856.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 531357..531359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil856.t1.CDS1Gchil856.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 531357..532118 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil856.t1.exon1Gchil856.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 531357..532118 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil856.t1.stop1Gchil856.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 532116..532118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil856.t1Gchil856.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 531357..532118 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil856.t1 ID=Gchil856.t1|Name=Gchil856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=254bp
MDISLLDVLPPSPLFDDRVDDVLAANAAFIMDPFTASPSLADDCCLAPPR
TQLLLDPFDSPPIPLASAAPFLPSPLSPSPLSPSPLSPAACLHPFMSAAD
AAVISDPMPTSPSLQQENLPANNCPAPPRPSASSTRAPAQRRLNAAVVPS
AAANSAAANGPSAAVAVAAVAAAVSAEQRSKDKLAQRKLRNKESARRYRE
KQVARRRQLENYTRTLSEQNRELEVLHHKLLTLTCQRSMRSGAPLSDVAA
RVL*
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spliced messenger RNA

>Gchil856.t1 ID=Gchil856.t1|Name=Gchil856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000017_pilon:531357..532118+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATATCTCGCTGCTCGATGTGTTGCCGCCCTCCCCGCTGTTCGATGA
TCGTGTCGATGATGTACTCGCCGCAAACGCTGCCTTCATCATGGACCCGT
TCACCGCTTCCCCATCGCTCGCAGATGACTGTTGTCTGGCTCCGCCACGC
ACGCAACTTTTGTTGGACCCATTTGACTCACCGCCCATTCCACTTGCCAG
CGCCGCTCCGTTTTTGCCCTccccgctctcgccctccccgctctcgccct
cccctcTCTCGCCTGCTGCTTGCCTGCACCCCTTCATGAGCGCCGCCGAC
GCCGCCGTCATCTCCGACCCGATGCCCACCTCGCCCTCTTTACAACAGGA
GAACCTCCCCGCCAACAATTGTCCTGCCCCTCCCCGACCGTCCGCCTCCT
CCACCCGCGCCCCTGCCCAACGCCGCCTCAACGCCgctgtcgtcccgagc
gccgctgccaacagcgccgccgccaatggcccgtcggccgccgtcgctgt
tgccgccgtcgccgccgcagtctctgccgAGCAGAGATCCAAGGACAAAC
TTGCGCAGAGAAAGCTTCGCAACAAGGAGAGTGCGCGACGGTACCGCGAG
AAACAAGTCGCCAGGCGACGACAGCTGGAAAATTATACTAGGACGCTTTC
GGAGCAAAATCGCGAGCTCGAGGTTCTGCATCATAAGCTGCTTACTCTCA
CGTGCCAGCGATCGATGCGCTCCGGCGCGCCTTTGTCCGATGTGGCGGCT
CGTGTTTTGTGA
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protein sequence of Gchil856.t1

>Gchil856.t1 ID=Gchil856.t1|Name=Gchil856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=254bp
MDISLLDVLPPSPLFDDRVDDVLAANAAFIMDPFTASPSLADDCCLAPPR
TQLLLDPFDSPPIPLASAAPFLPSPLSPSPLSPSPLSPAACLHPFMSAAD
AAVISDPMPTSPSLQQENLPANNCPAPPRPSASSTRAPAQRRLNAAVVPS
AAANSAAANGPSAAVAVAAVAAAVSAEQRSKDKLAQRKLRNKESARRYRE
KQVARRRQLENYTRTLSEQNRELEVLHHKLLTLTCQRSMRSGAPLSDVAA
RVL*
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mRNA from alignment at tig00000017_pilon:531357..532118+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil856.t1 ID=Gchil856.t1|Name=Gchil856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=762bp|location=Sequence derived from alignment at tig00000017_pilon:531357..532118+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATATCTCGCTGCTCGATGTGTTGCCGCCCTCCCCGCTGTTCGATGA
TCGTGTCGATGATGTACTCGCCGCAAACGCTGCCTTCATCATGGACCCGT
TCACCGCTTCCCCATCGCTCGCAGATGACTGTTGTCTGGCTCCGCCACGC
ACGCAACTTTTGTTGGACCCATTTGACTCACCGCCCATTCCACTTGCCAG
CGCCGCTCCGTTTTTGCCCTccccgctctcgccctccccgctctcgccct
cccctcTCTCGCCTGCTGCTTGCCTGCACCCCTTCATGAGCGCCGCCGAC
GCCGCCGTCATCTCCGACCCGATGCCCACCTCGCCCTCTTTACAACAGGA
GAACCTCCCCGCCAACAATTGTCCTGCCCCTCCCCGACCGTCCGCCTCCT
CCACCCGCGCCCCTGCCCAACGCCGCCTCAACGCCgctgtcgtcccgagc
gccgctgccaacagcgccgccgccaatggcccgtcggccgccgtcgctgt
tgccgccgtcgccgccgcagtctctgccgAGCAGAGATCCAAGGACAAAC
TTGCGCAGAGAAAGCTTCGCAACAAGGAGAGTGCGCGACGGTACCGCGAG
AAACAAGTCGCCAGGCGACGACAGCTGGAAAATTATACTAGGACGCTTTC
GGAGCAAAATCGCGAGCTCGAGGTTCTGCATCATAAGCTGCTTACTCTCA
CGTGCCAGCGATCGATGCGCTCCGGCGCGCCTTTGTCCGATGTGGCGGCT
CGTGTTTTGTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:531357..532118+

>Gchil856.t1 ID=Gchil856.t1|Name=Gchil856.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=762bp|location=Sequence derived from alignment at tig00000017_pilon:531357..532118+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATATCTCGCTGCTCGATGTGTTGCCGCCCTCCCCGCTGTTCGATGA
TCGTGTCGATGATGTACTCGCCGCAAACGCTGCCTTCATCATGGACCCGT
TCACCGCTTCCCCATCGCTCGCAGATGACTGTTGTCTGGCTCCGCCACGC
ACGCAACTTTTGTTGGACCCATTTGACTCACCGCCCATTCCACTTGCCAG
CGCCGCTCCGTTTTTGCCCTccccgctctcgccctccccgctctcgccct
cccctcTCTCGCCTGCTGCTTGCCTGCACCCCTTCATGAGCGCCGCCGAC
GCCGCCGTCATCTCCGACCCGATGCCCACCTCGCCCTCTTTACAACAGGA
GAACCTCCCCGCCAACAATTGTCCTGCCCCTCCCCGACCGTCCGCCTCCT
CCACCCGCGCCCCTGCCCAACGCCGCCTCAACGCCgctgtcgtcccgagc
gccgctgccaacagcgccgccgccaatggcccgtcggccgccgtcgctgt
tgccgccgtcgccgccgcagtctctgccgAGCAGAGATCCAAGGACAAAC
TTGCGCAGAGAAAGCTTCGCAACAAGGAGAGTGCGCGACGGTACCGCGAG
AAACAAGTCGCCAGGCGACGACAGCTGGAAAATTATACTAGGACGCTTTC
GGAGCAAAATCGCGAGCTCGAGGTTCTGCATCATAAGCTGCTTACTCTCA
CGTGCCAGCGATCGATGCGCTCCGGCGCGCCTTTGTCCGATGTGGCGGCT
CGTGTTTTGTGA
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