Gchil8551.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8551.t1
Unique NameGchil8551.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length542
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:243684..245813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8551Gchil8551Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 243684..245813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8551.t1Gchil8551.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 243684..245813 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8551.t1.stop1Gchil8551.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 243684..243686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8551.t1.CDS1Gchil8551.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 243684..245260 -
Gchil8551.t1.CDS2Gchil8551.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 245686..245728 -
Gchil8551.t1.CDS3Gchil8551.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 245808..245813 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8551.t1.exon1Gchil8551.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 243684..245260 -
Gchil8551.t1.exon2Gchil8551.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 245686..245728 -
Gchil8551.t1.exon3Gchil8551.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 245808..245813 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8551.t1.intron1Gchil8551.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 245261..245685 -
Gchil8551.t1.intron2Gchil8551.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 245729..245807 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8551.t1.start1Gchil8551.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 245811..245813 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8551.t1 ID=Gchil8551.t1|Name=Gchil8551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=542bp
MKPCLRDYMLKARRDLVAAKAFILTNSTAESPETVRVDGSNEERDGWPFL
YPSKLRKVPATTNRLNHPWYVPDRVRFLTLEESRYRVLYTPVRPAASDGM
GHNSAVMNAEIGVALRLGLSYSHRVSTHGPLTKDNPNAVEEFFGWGHGQI
PREFIRESFCKSSFNVSHRTCHVCEGLKRNSSFPDMNFNHLVELPYNLTY
GRMRCVRSGDAQLRNACKEQQYSFVKHNNRSHTIFQMPLLTCASNPADSF
FDRKTRAYLFNSYWDQHGVKDLHENTSRTAAHGNIVPRYDIPIIQLSRRR
TTIEYREHALNIAIHARRGDFFKESKRNMVSTAAFGRVVREFLAIVQERG
GIFSRMPVVIHIYSEGAPKEKNRFEGHDISRMTKLYMDSDGKVRDVNWVT
RAIRAFGTAEVSSHKSTNSTGNAYSRKPRRFLLFPGGLIVKFHIAADTLQ
SMHEMISADVFIGSESGMSMHIVSTMSRGLYFLPKRLVSHEFECCQGTFH
SETGELTDPGSIRLFWEAFAGANEASATRAFIANKVKSMQR*
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spliced messenger RNA

>Gchil8551.t1 ID=Gchil8551.t1|Name=Gchil8551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at tig00000088_pilon:243684..245813- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCATGCTTGCGAGATTATATGTTGAAAGCGCGACGTGATCTAGT
AGCCGCCAAAGCCTTCATATTGACGAATTCCACAGCGGAGAGTCCTGAGA
CTGTTCGAGTCGATGGATCGAATGAAGAACGTGATGGTTGGCCTTTCCTC
TACCCTTCGAAATTGAGAAAGGTACCGGCAACAACGAACAGATTAAACCA
TCCGTGGTACGTCCCGGATCGCGTGCGGTTCCTGACCCTGGAGGAATCGA
GGTATAGAGTGCTATACACTCCTGTTCGTCCAGCAGCTAGCGATGGCATG
GGTCATAATTCCGCCGTGATGAACGCGGAAATTGGGGTTGCATTACGACT
TGGCTTGTCGTACTCTCATCGCGTATCTACACATGGTCCTCTAACCAAAG
ACAATCCGAACGCAGTGGAAGAATTCTTTGGTTGGGGCCATGGTCAAATT
CCGAGAGAATTCATCCGCGAATCGTTCTGCAAATCTTCGTTTAACGTTTC
ACACAGAACGTGTCATGTTTGCGAGGGTCTGAAAAGGAACAGTTCCTTTC
CGGATATGAATTTTAATCATCTCGTCGAGCTTCCTTACAATTTAACCTAT
GGAAGGATGAGGTGTGTGAGATCAGGGGATGCTCAGCTCAGGAATGCTTG
CAAGGAACAACAATATTCGTTTGTGAAACATAACAATAGATCTCATACTA
TTTTCCAGATGCCTCTTCTCACATGCGCCTCTAACCCGGCAGATTCGTTC
TTTGACCGCAAAACTAGAGCGTACTTATTTAACAGTTATTGGGATCAACA
TGGTGTGAAGGACCTTCACGAAAACACGAGTCGCACCGCAGCACATGGCA
ATATCGTGCCGAGATACGACATTCCAATCATTCAGCTTTCACGTAGAAGA
ACAACAATAGAATATCGGGAGCACGCCCTGAACATTGCGATCCATGCCCG
ACGAGGAGATTTCTTCAAGGAGTCAAAGCGCAACATGGTTTCCACTGCAG
CATTTGGTCGAGTTGTCAGAGAGTTTTTAGCTATCGTACAAGAACGCGGT
GGTATCTTTTCTCGAATGCCAGTCGTTATTCACATATACTCTGAAGGTGC
TCCGAAAGAGAAAAACCGCTTTGAAGGACATGATATATCTCGTATGACAA
AGCTTTACATGGATTCTGACGGAAAGGTGCGTGATGTAAATTGGGTGACT
CGCGCAATAAGAGCATTCGGAACCGCCGAAGTTTCTAGCCATAAATCTAC
CAATTCAACTGGAAACGCCTATTCAAGGAAGCCTCGCCGCTTTCTATTGT
TCCCAGGTGGACTAATTGTGAAATTCCACATCGCCGCTGATACTCTTCAA
TCCATGCATGAGATGATCTCGGCCGATGTGTTCATTGGCAGCGAATCTGG
AATGAGCATGCACATTGTATCGACCATGTCTCGCGGACTTTACTTCTTAC
CTAAGCGATTGGTGTCGCATGAATTTGAATGCTGTCAAGGAACGTTTCAC
TCAGAAACTGGTGAGTTGACTGACCCAGGAAGTATTAGGCTCTTTTGGGA
AGCATTCGCGGGGGCAAACGAGGCCTCCGCGACACGTGCCTTCATTGCTA
ATAAGGTGAAAAGCATGCAACGCTAG
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protein sequence of Gchil8551.t1

>Gchil8551.t1 ID=Gchil8551.t1|Name=Gchil8551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=542bp
MKPCLRDYMLKARRDLVAAKAFILTNSTAESPETVRVDGSNEERDGWPFL
YPSKLRKVPATTNRLNHPWYVPDRVRFLTLEESRYRVLYTPVRPAASDGM
GHNSAVMNAEIGVALRLGLSYSHRVSTHGPLTKDNPNAVEEFFGWGHGQI
PREFIRESFCKSSFNVSHRTCHVCEGLKRNSSFPDMNFNHLVELPYNLTY
GRMRCVRSGDAQLRNACKEQQYSFVKHNNRSHTIFQMPLLTCASNPADSF
FDRKTRAYLFNSYWDQHGVKDLHENTSRTAAHGNIVPRYDIPIIQLSRRR
TTIEYREHALNIAIHARRGDFFKESKRNMVSTAAFGRVVREFLAIVQERG
GIFSRMPVVIHIYSEGAPKEKNRFEGHDISRMTKLYMDSDGKVRDVNWVT
RAIRAFGTAEVSSHKSTNSTGNAYSRKPRRFLLFPGGLIVKFHIAADTLQ
SMHEMISADVFIGSESGMSMHIVSTMSRGLYFLPKRLVSHEFECCQGTFH
SETGELTDPGSIRLFWEAFAGANEASATRAFIANKVKSMQR*
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mRNA from alignment at tig00000088_pilon:243684..245813-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8551.t1 ID=Gchil8551.t1|Name=Gchil8551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2130bp|location=Sequence derived from alignment at tig00000088_pilon:243684..245813- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGTATGTTTTCCTGCCATTTACCGCGAAAGGGTCCATGTAGCAAT
GCGATTGACCGCTGGTGAACGAATGTCCTATCAAGCCATGCTTGCGAGAT
TATATGTTGAAAGCGCGACGTGATCTAGGTCCGTTAAATTCGAAACCCGA
CTAGAGAGGGATGGGTAATAATTAAGAATGTCTGGCATCCTAGGAAGCTC
AATTTAGAGAGGAGCTGAGAATGCCTGATAGCTCATGCTCAGAGCCAAGG
TTAAGATAGCCAGCCAGGACAATATAACGATACTCATCGCAACTGAAGGT
GGCTTCTTAAACCCTCAAACGTTCAATCATCCTTCTTAGCTTTGAAGTAT
TTCTGTATGTGCCTTGTTGATTCGAAATATCAAGGATTGCGTTTCCATTG
GAACAGATACTCTCTACGCACCAATGGCCGACAATCCAGCCCATGTCTGT
GATCCTAATTTCATTAAGAGGGGGACAAAAATATCGATCAGAACAAACAA
CATGAACTTGGTGCTCTTTGCTATGCTTTTCGCGCTTTCATCTGTTATTT
CAGTAGCCGCCAAAGCCTTCATATTGACGAATTCCACAGCGGAGAGTCCT
GAGACTGTTCGAGTCGATGGATCGAATGAAGAACGTGATGGTTGGCCTTT
CCTCTACCCTTCGAAATTGAGAAAGGTACCGGCAACAACGAACAGATTAA
ACCATCCGTGGTACGTCCCGGATCGCGTGCGGTTCCTGACCCTGGAGGAA
TCGAGGTATAGAGTGCTATACACTCCTGTTCGTCCAGCAGCTAGCGATGG
CATGGGTCATAATTCCGCCGTGATGAACGCGGAAATTGGGGTTGCATTAC
GACTTGGCTTGTCGTACTCTCATCGCGTATCTACACATGGTCCTCTAACC
AAAGACAATCCGAACGCAGTGGAAGAATTCTTTGGTTGGGGCCATGGTCA
AATTCCGAGAGAATTCATCCGCGAATCGTTCTGCAAATCTTCGTTTAACG
TTTCACACAGAACGTGTCATGTTTGCGAGGGTCTGAAAAGGAACAGTTCC
TTTCCGGATATGAATTTTAATCATCTCGTCGAGCTTCCTTACAATTTAAC
CTATGGAAGGATGAGGTGTGTGAGATCAGGGGATGCTCAGCTCAGGAATG
CTTGCAAGGAACAACAATATTCGTTTGTGAAACATAACAATAGATCTCAT
ACTATTTTCCAGATGCCTCTTCTCACATGCGCCTCTAACCCGGCAGATTC
GTTCTTTGACCGCAAAACTAGAGCGTACTTATTTAACAGTTATTGGGATC
AACATGGTGTGAAGGACCTTCACGAAAACACGAGTCGCACCGCAGCACAT
GGCAATATCGTGCCGAGATACGACATTCCAATCATTCAGCTTTCACGTAG
AAGAACAACAATAGAATATCGGGAGCACGCCCTGAACATTGCGATCCATG
CCCGACGAGGAGATTTCTTCAAGGAGTCAAAGCGCAACATGGTTTCCACT
GCAGCATTTGGTCGAGTTGTCAGAGAGTTTTTAGCTATCGTACAAGAACG
CGGTGGTATCTTTTCTCGAATGCCAGTCGTTATTCACATATACTCTGAAG
GTGCTCCGAAAGAGAAAAACCGCTTTGAAGGACATGATATATCTCGTATG
ACAAAGCTTTACATGGATTCTGACGGAAAGGTGCGTGATGTAAATTGGGT
GACTCGCGCAATAAGAGCATTCGGAACCGCCGAAGTTTCTAGCCATAAAT
CTACCAATTCAACTGGAAACGCCTATTCAAGGAAGCCTCGCCGCTTTCTA
TTGTTCCCAGGTGGACTAATTGTGAAATTCCACATCGCCGCTGATACTCT
TCAATCCATGCATGAGATGATCTCGGCCGATGTGTTCATTGGCAGCGAAT
CTGGAATGAGCATGCACATTGTATCGACCATGTCTCGCGGACTTTACTTC
TTACCTAAGCGATTGGTGTCGCATGAATTTGAATGCTGTCAAGGAACGTT
TCACTCAGAAACTGGTGAGTTGACTGACCCAGGAAGTATTAGGCTCTTTT
GGGAAGCATTCGCGGGGGCAAACGAGGCCTCCGCGACACGTGCCTTCATT
GCTAATAAGGTGAAAAGCATGCAACGCTAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:243684..245813-

>Gchil8551.t1 ID=Gchil8551.t1|Name=Gchil8551.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1626bp|location=Sequence derived from alignment at tig00000088_pilon:243684..245813- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCATGCTTGCGAGATTATATGTTGAAAGCGCGACGTGATCTAGT
AGCCGCCAAAGCCTTCATATTGACGAATTCCACAGCGGAGAGTCCTGAGA
CTGTTCGAGTCGATGGATCGAATGAAGAACGTGATGGTTGGCCTTTCCTC
TACCCTTCGAAATTGAGAAAGGTACCGGCAACAACGAACAGATTAAACCA
TCCGTGGTACGTCCCGGATCGCGTGCGGTTCCTGACCCTGGAGGAATCGA
GGTATAGAGTGCTATACACTCCTGTTCGTCCAGCAGCTAGCGATGGCATG
GGTCATAATTCCGCCGTGATGAACGCGGAAATTGGGGTTGCATTACGACT
TGGCTTGTCGTACTCTCATCGCGTATCTACACATGGTCCTCTAACCAAAG
ACAATCCGAACGCAGTGGAAGAATTCTTTGGTTGGGGCCATGGTCAAATT
CCGAGAGAATTCATCCGCGAATCGTTCTGCAAATCTTCGTTTAACGTTTC
ACACAGAACGTGTCATGTTTGCGAGGGTCTGAAAAGGAACAGTTCCTTTC
CGGATATGAATTTTAATCATCTCGTCGAGCTTCCTTACAATTTAACCTAT
GGAAGGATGAGGTGTGTGAGATCAGGGGATGCTCAGCTCAGGAATGCTTG
CAAGGAACAACAATATTCGTTTGTGAAACATAACAATAGATCTCATACTA
TTTTCCAGATGCCTCTTCTCACATGCGCCTCTAACCCGGCAGATTCGTTC
TTTGACCGCAAAACTAGAGCGTACTTATTTAACAGTTATTGGGATCAACA
TGGTGTGAAGGACCTTCACGAAAACACGAGTCGCACCGCAGCACATGGCA
ATATCGTGCCGAGATACGACATTCCAATCATTCAGCTTTCACGTAGAAGA
ACAACAATAGAATATCGGGAGCACGCCCTGAACATTGCGATCCATGCCCG
ACGAGGAGATTTCTTCAAGGAGTCAAAGCGCAACATGGTTTCCACTGCAG
CATTTGGTCGAGTTGTCAGAGAGTTTTTAGCTATCGTACAAGAACGCGGT
GGTATCTTTTCTCGAATGCCAGTCGTTATTCACATATACTCTGAAGGTGC
TCCGAAAGAGAAAAACCGCTTTGAAGGACATGATATATCTCGTATGACAA
AGCTTTACATGGATTCTGACGGAAAGGTGCGTGATGTAAATTGGGTGACT
CGCGCAATAAGAGCATTCGGAACCGCCGAAGTTTCTAGCCATAAATCTAC
CAATTCAACTGGAAACGCCTATTCAAGGAAGCCTCGCCGCTTTCTATTGT
TCCCAGGTGGACTAATTGTGAAATTCCACATCGCCGCTGATACTCTTCAA
TCCATGCATGAGATGATCTCGGCCGATGTGTTCATTGGCAGCGAATCTGG
AATGAGCATGCACATTGTATCGACCATGTCTCGCGGACTTTACTTCTTAC
CTAAGCGATTGGTGTCGCATGAATTTGAATGCTGTCAAGGAACGTTTCAC
TCAGAAACTGGTGAGTTGACTGACCCAGGAAGTATTAGGCTCTTTTGGGA
AGCATTCGCGGGGGCAAACGAGGCCTCCGCGACACGTGCCTTCATTGCTA
ATAAGGTGAAAAGCATGCAACGCTAG
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