Gchil8548.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8548.t1
Unique Name	Gchil8548.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:189953..191257 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2850.Phatr48253
PFAMs	BACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10442,ko:K20285,ko:K21912
Evalue	7.26e-70
EggNOG OGs	KOG4441@1\|root,KOG4441@2759\|Eukaryota
Description	protein ubiquitination
COG category	KLT
BRITE	ko00000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8548	Gchil8548	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 189953..191257 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8548.t1.start1	Gchil8548.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 189953..189955 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8548.t1.CDS1	Gchil8548.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 189953..191257 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8548.t1.exon1	Gchil8548.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 189953..191257 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8548.t1.stop1	Gchil8548.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 191255..191257 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8548.t1	Gchil8548.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 189953..191257 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:189953..191257+
coding sequence from alignment at tig00000088_pilon:189953..191257+

mRNA sequence

>Gchil8548.t1 ID=Gchil8548.t1|Name=Gchil8548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp
MSVPTAPRETLSLAAVHSESQPAIRSVQAMPKPLERHGFPLLTTVSRMAD
PSCSNGIAARGGCCPKVCGQCGGTGCWPKSLVTGTLCCADGIIRTKPSCS
VAGPPCKLAPATQKFSPAFFNHAFVFKGRPVQRHEACAVMINGLVILVGG
RGVNKPVSIYNPKTGIWTTHPGPGAGIEIHHFQCVAAQGKVWIVSSWTGG
FPFEKDNDKIFVYDVASKSWATRAGLPLSRRRGGSAAVLRGDWIYVVGGN
RGGHGAHATSLPWMDAYNYKTNKWQTALPSMPATEARDHVGGGMVNGQLC
IAGGRDGGEANFFFKNKAATYCFNFGAWKWEKKANMPVPRAGAMTGTVCG
GKLMVAGGEGGTQAYRRVDLFNGSVWERGPDMLRARHGSGLAIAQCRCGQ
IFIPSGSGNRGGSPELFSTEKYNPPGTPNVCGFY*

spliced messenger RNA

>Gchil8548.t1 ID=Gchil8548.t1|Name=Gchil8548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000088_pilon:189953..191257+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGTGCCAACAGCCCCCCGTGAGACTCTCTCCCTCGCTGCTGTGCA
CTCGGAGTCACAGCCTGCCATCAGAAGCGTTCAGGCGATGCCCAAGCCGC
TGGAACGCCACGGCTTCCCTCTTCTCACAACTGTGTCCAGAATGGCAGAC
CCGTCATGCTCCAATGGCATCGCTGCGCGGGGAGGCTGTTGTCCGAAGGT
ATGCGGCCAGTGTGGTGGCACTGGCTGTTGGCCCAAATCACTTGTCACGG
GCACTCTGTGTTGTGCCGACGGAATCATTCGCACCAAGCCATCGTGCAGT
GTGGCTGGTCCGCCTTGCAAGCTGGCTCCAGCTACGCAGAAATTTAGCCC
CGCCTTTTTCAATCATGCCTTTGTGTTCAAGGGAAGGCCTGTGCAGAGAC
ACGAAGCCTGCGCTGTCATGATCAATGGTCTTGTCATTCTTGTCGGCGGC
CGTGGTGTGAACAAGCCAGTGAGTATCTACAATCCTAAGACCGGCATCTG
GACCACTCATCCGGGTCCAGGTGCCGGAATCGAGATCCACCATTTCCAAT
GCGTCGCCGCTCAAGGAAAGGTCTGGATCGTTTCCAGTTGGACGGGCGGC
TTCCCATTCGAAAAAGACAATGACAAGATCTTTGTGTACGATGTGGCTTC
CAAGTCGTGGGCGACTCGAGCAGGCTTGCCGTTGTCGAGACGCCGTGGCG
GAAGCGCAGCTGTGCTTCGCGGAGACTGGATTTATGTAGTTGGAGGAAAT
CGTGGCGGACACGGCGCGCATGCCACGTCGCTGCCTTGGATGGATGCCTA
CAACTACAAGACAAATAAGTGGCAAACTGCACTGCCATCCATGCCAGCGA
CTGAGGCTCGTGACCACGTTGGCGGTGGTATGGTGAATGGCCAATTGTGC
ATTGCGGGCGGTCGAGACGGTGGCGAAGCCAATTTCTTCTTCAAGAACAA
GGCCGCCACATACTGCTTCAACTTTGGGGCGTGGAAATGGGAGAAGAAGG
CCAATATGCCCGTCCCGAGAGCTGGTGCCATGACTGGAACAGTGTGCGGC
GGGAAACTGATGGTTGCTGGAGGCGAGGGCGGAACACAAGCATACAGAAG
AGTCGATTTGTTCAATGGATCGGTGTGGGAACGAGGTCCCGACATGCTTC
GAGCGAGACATGGCTCAGGTCTGGCTATCGCCCAATGCCGATGCGGTCAG
ATATTCATTCCAAGTGGAAGCGGTAACCGCGGTGGAAGTCCCGAATTGTT
TTCGACCGAGAAATACAATCCGCCGGGAACACCAAACGTGTGTGGCTTCT
ATTAA

protein sequence of Gchil8548.t1

>Gchil8548.t1 ID=Gchil8548.t1|Name=Gchil8548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=435bp
MSVPTAPRETLSLAAVHSESQPAIRSVQAMPKPLERHGFPLLTTVSRMAD
PSCSNGIAARGGCCPKVCGQCGGTGCWPKSLVTGTLCCADGIIRTKPSCS
VAGPPCKLAPATQKFSPAFFNHAFVFKGRPVQRHEACAVMINGLVILVGG
RGVNKPVSIYNPKTGIWTTHPGPGAGIEIHHFQCVAAQGKVWIVSSWTGG
FPFEKDNDKIFVYDVASKSWATRAGLPLSRRRGGSAAVLRGDWIYVVGGN
RGGHGAHATSLPWMDAYNYKTNKWQTALPSMPATEARDHVGGGMVNGQLC
IAGGRDGGEANFFFKNKAATYCFNFGAWKWEKKANMPVPRAGAMTGTVCG
GKLMVAGGEGGTQAYRRVDLFNGSVWERGPDMLRARHGSGLAIAQCRCGQ
IFIPSGSGNRGGSPELFSTEKYNPPGTPNVCGFY*

mRNA from alignment at tig00000088_pilon:189953..191257+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8548.t1 ID=Gchil8548.t1|Name=Gchil8548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00000088_pilon:189953..191257+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGTGCCAACAGCCCCCCGTGAGACTCTCTCCCTCGCTGCTGTGCA
CTCGGAGTCACAGCCTGCCATCAGAAGCGTTCAGGCGATGCCCAAGCCGC
TGGAACGCCACGGCTTCCCTCTTCTCACAACTGTGTCCAGAATGGCAGAC
CCGTCATGCTCCAATGGCATCGCTGCGCGGGGAGGCTGTTGTCCGAAGGT
ATGCGGCCAGTGTGGTGGCACTGGCTGTTGGCCCAAATCACTTGTCACGG
GCACTCTGTGTTGTGCCGACGGAATCATTCGCACCAAGCCATCGTGCAGT
GTGGCTGGTCCGCCTTGCAAGCTGGCTCCAGCTACGCAGAAATTTAGCCC
CGCCTTTTTCAATCATGCCTTTGTGTTCAAGGGAAGGCCTGTGCAGAGAC
ACGAAGCCTGCGCTGTCATGATCAATGGTCTTGTCATTCTTGTCGGCGGC
CGTGGTGTGAACAAGCCAGTGAGTATCTACAATCCTAAGACCGGCATCTG
GACCACTCATCCGGGTCCAGGTGCCGGAATCGAGATCCACCATTTCCAAT
GCGTCGCCGCTCAAGGAAAGGTCTGGATCGTTTCCAGTTGGACGGGCGGC
TTCCCATTCGAAAAAGACAATGACAAGATCTTTGTGTACGATGTGGCTTC
CAAGTCGTGGGCGACTCGAGCAGGCTTGCCGTTGTCGAGACGCCGTGGCG
GAAGCGCAGCTGTGCTTCGCGGAGACTGGATTTATGTAGTTGGAGGAAAT
CGTGGCGGACACGGCGCGCATGCCACGTCGCTGCCTTGGATGGATGCCTA
CAACTACAAGACAAATAAGTGGCAAACTGCACTGCCATCCATGCCAGCGA
CTGAGGCTCGTGACCACGTTGGCGGTGGTATGGTGAATGGCCAATTGTGC
ATTGCGGGCGGTCGAGACGGTGGCGAAGCCAATTTCTTCTTCAAGAACAA
GGCCGCCACATACTGCTTCAACTTTGGGGCGTGGAAATGGGAGAAGAAGG
CCAATATGCCCGTCCCGAGAGCTGGTGCCATGACTGGAACAGTGTGCGGC
GGGAAACTGATGGTTGCTGGAGGCGAGGGCGGAACACAAGCATACAGAAG
AGTCGATTTGTTCAATGGATCGGTGTGGGAACGAGGTCCCGACATGCTTC
GAGCGAGACATGGCTCAGGTCTGGCTATCGCCCAATGCCGATGCGGTCAG
ATATTCATTCCAAGTGGAAGCGGTAACCGCGGTGGAAGTCCCGAATTGTT
TTCGACCGAGAAATACAATCCGCCGGGAACACCAAACGTGTGTGGCTTCT
ATTAA

Coding sequence (CDS) from alignment at tig00000088_pilon:189953..191257+

>Gchil8548.t1 ID=Gchil8548.t1|Name=Gchil8548.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00000088_pilon:189953..191257+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGGTGCCAACAGCCCCCCGTGAGACTCTCTCCCTCGCTGCTGTGCA
CTCGGAGTCACAGCCTGCCATCAGAAGCGTTCAGGCGATGCCCAAGCCGC
TGGAACGCCACGGCTTCCCTCTTCTCACAACTGTGTCCAGAATGGCAGAC
CCGTCATGCTCCAATGGCATCGCTGCGCGGGGAGGCTGTTGTCCGAAGGT
ATGCGGCCAGTGTGGTGGCACTGGCTGTTGGCCCAAATCACTTGTCACGG
GCACTCTGTGTTGTGCCGACGGAATCATTCGCACCAAGCCATCGTGCAGT
GTGGCTGGTCCGCCTTGCAAGCTGGCTCCAGCTACGCAGAAATTTAGCCC
CGCCTTTTTCAATCATGCCTTTGTGTTCAAGGGAAGGCCTGTGCAGAGAC
ACGAAGCCTGCGCTGTCATGATCAATGGTCTTGTCATTCTTGTCGGCGGC
CGTGGTGTGAACAAGCCAGTGAGTATCTACAATCCTAAGACCGGCATCTG
GACCACTCATCCGGGTCCAGGTGCCGGAATCGAGATCCACCATTTCCAAT
GCGTCGCCGCTCAAGGAAAGGTCTGGATCGTTTCCAGTTGGACGGGCGGC
TTCCCATTCGAAAAAGACAATGACAAGATCTTTGTGTACGATGTGGCTTC
CAAGTCGTGGGCGACTCGAGCAGGCTTGCCGTTGTCGAGACGCCGTGGCG
GAAGCGCAGCTGTGCTTCGCGGAGACTGGATTTATGTAGTTGGAGGAAAT
CGTGGCGGACACGGCGCGCATGCCACGTCGCTGCCTTGGATGGATGCCTA
CAACTACAAGACAAATAAGTGGCAAACTGCACTGCCATCCATGCCAGCGA
CTGAGGCTCGTGACCACGTTGGCGGTGGTATGGTGAATGGCCAATTGTGC
ATTGCGGGCGGTCGAGACGGTGGCGAAGCCAATTTCTTCTTCAAGAACAA
GGCCGCCACATACTGCTTCAACTTTGGGGCGTGGAAATGGGAGAAGAAGG
CCAATATGCCCGTCCCGAGAGCTGGTGCCATGACTGGAACAGTGTGCGGC
GGGAAACTGATGGTTGCTGGAGGCGAGGGCGGAACACAAGCATACAGAAG
AGTCGATTTGTTCAATGGATCGGTGTGGGAACGAGGTCCCGACATGCTTC
GAGCGAGACATGGCTCAGGTCTGGCTATCGCCCAATGCCGATGCGGTCAG
ATATTCATTCCAAGTGGAAGCGGTAACCGCGGTGGAAGTCCCGAATTGTT
TTCGACCGAGAAATACAATCCGCCGGGAACACCAAACGTGTGTGGCTTCT
ATTAA