Gchil8505.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8505.t1
Unique NameGchil8505.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:225624..226313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8505Gchil8505Gracilaria chilensis NLEC103_M9 malegenetig00000116_pilon 225624..226313 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8505.t1.start1Gchil8505.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000116_pilon 225624..225626 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8505.t1.CDS1Gchil8505.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000116_pilon 225624..226313 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8505.t1.exon1Gchil8505.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000116_pilon 225624..226313 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8505.t1.stop1Gchil8505.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000116_pilon 226311..226313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8505.t1Gchil8505.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000116_pilon 225624..226313 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8505.t1 ID=Gchil8505.t1|Name=Gchil8505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=230bp
MVPSSSAALSASLHAQSHPVTTAWGSPSPRIGSMFLDSFDSPRSQLPFAL
VGAPPIPPSLSLGAPASSHASPTLQPVSQPHPLLTPEPSKPLAMLQDHTN
HPLSPATPPHGECTDSRQRRQLRIQHRRRMRRNAPISRASRLTPVADQAA
LNRRAQRVIRNREVALRARQKQKALMKSLENENFSLKSKATSLEVENSTL
KTQIDLLRRGSFLDFDSALTASISGSTTN*
back to top

spliced messenger RNA

>Gchil8505.t1 ID=Gchil8505.t1|Name=Gchil8505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000116_pilon:225624..226313+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCCGTCCTCAAGCGCAGCCCTCTCCGCCTCGCTCCACGCCCAGTC
GCACCCTGTCACAACCGCATGGGGTTCACCCTCCCCGCGTATCGGAAGTA
TGTTCCTCGACTCGTTCGACTCGCCCAGGAGTCAACTGCCCTTTGCGCTC
GTCGGTGCGCCCCCAATTCCGCCCTCGCTCTCGCTCGGCGCCCCAGCCTC
TTCACATGCTTCACCAACGCTGCAGCCGGTCTCGCAGCCGCACCCGCTGC
TCACCCCAGAGCCTTCCAAACCGCTGGCCATGCTGCAGGACCACACTAAT
CATCCACTGTCACCCGCCACCCCGCCGCACGGCGAGTGTACCGATAGCCG
CCAGCGCCGCCAGCTGCGTATTCAACATCGCCGCCGCATGCGTCGCAATG
CGCCAATTTCTCGTGCAAGCCGCCTCACACCGGTGGCCGATCAGGCCGCG
CTCAACCGCCGCGCCCAGCGCGTCATTCGCAATCGGGAGGTAGCGCTACG
TGCTAGACAGAAGCAAAAAGCGCTCATGAAGAGCTTGGAGAATGAGAATT
TTTCGCTCAAGAGCAAGGCCACTTCGCTGGAGGTGGAAAACTCCACGCTC
AAGACGCAGATCGATTTGTTAAGGCGCGGCTCTTTTCTTGATTTTGATTC
TGCCTTGACTGCATCCATATCGGGTTCTACCACTAACTAA
back to top

protein sequence of Gchil8505.t1

>Gchil8505.t1 ID=Gchil8505.t1|Name=Gchil8505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MVPSSSAALSASLHAQSHPVTTAWGSPSPRIGSMFLDSFDSPRSQLPFAL
VGAPPIPPSLSLGAPASSHASPTLQPVSQPHPLLTPEPSKPLAMLQDHTN
HPLSPATPPHGECTDSRQRRQLRIQHRRRMRRNAPISRASRLTPVADQAA
LNRRAQRVIRNREVALRARQKQKALMKSLENENFSLKSKATSLEVENSTL
KTQIDLLRRGSFLDFDSALTASISGSTTN*
back to top

mRNA from alignment at tig00000116_pilon:225624..226313+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8505.t1 ID=Gchil8505.t1|Name=Gchil8505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000116_pilon:225624..226313+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCCGTCCTCAAGCGCAGCCCTCTCCGCCTCGCTCCACGCCCAGTC
GCACCCTGTCACAACCGCATGGGGTTCACCCTCCCCGCGTATCGGAAGTA
TGTTCCTCGACTCGTTCGACTCGCCCAGGAGTCAACTGCCCTTTGCGCTC
GTCGGTGCGCCCCCAATTCCGCCCTCGCTCTCGCTCGGCGCCCCAGCCTC
TTCACATGCTTCACCAACGCTGCAGCCGGTCTCGCAGCCGCACCCGCTGC
TCACCCCAGAGCCTTCCAAACCGCTGGCCATGCTGCAGGACCACACTAAT
CATCCACTGTCACCCGCCACCCCGCCGCACGGCGAGTGTACCGATAGCCG
CCAGCGCCGCCAGCTGCGTATTCAACATCGCCGCCGCATGCGTCGCAATG
CGCCAATTTCTCGTGCAAGCCGCCTCACACCGGTGGCCGATCAGGCCGCG
CTCAACCGCCGCGCCCAGCGCGTCATTCGCAATCGGGAGGTAGCGCTACG
TGCTAGACAGAAGCAAAAAGCGCTCATGAAGAGCTTGGAGAATGAGAATT
TTTCGCTCAAGAGCAAGGCCACTTCGCTGGAGGTGGAAAACTCCACGCTC
AAGACGCAGATCGATTTGTTAAGGCGCGGCTCTTTTCTTGATTTTGATTC
TGCCTTGACTGCATCCATATCGGGTTCTACCACTAACTAA
back to top

Coding sequence (CDS) from alignment at tig00000116_pilon:225624..226313+

>Gchil8505.t1 ID=Gchil8505.t1|Name=Gchil8505.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000116_pilon:225624..226313+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCCGTCCTCAAGCGCAGCCCTCTCCGCCTCGCTCCACGCCCAGTC
GCACCCTGTCACAACCGCATGGGGTTCACCCTCCCCGCGTATCGGAAGTA
TGTTCCTCGACTCGTTCGACTCGCCCAGGAGTCAACTGCCCTTTGCGCTC
GTCGGTGCGCCCCCAATTCCGCCCTCGCTCTCGCTCGGCGCCCCAGCCTC
TTCACATGCTTCACCAACGCTGCAGCCGGTCTCGCAGCCGCACCCGCTGC
TCACCCCAGAGCCTTCCAAACCGCTGGCCATGCTGCAGGACCACACTAAT
CATCCACTGTCACCCGCCACCCCGCCGCACGGCGAGTGTACCGATAGCCG
CCAGCGCCGCCAGCTGCGTATTCAACATCGCCGCCGCATGCGTCGCAATG
CGCCAATTTCTCGTGCAAGCCGCCTCACACCGGTGGCCGATCAGGCCGCG
CTCAACCGCCGCGCCCAGCGCGTCATTCGCAATCGGGAGGTAGCGCTACG
TGCTAGACAGAAGCAAAAAGCGCTCATGAAGAGCTTGGAGAATGAGAATT
TTTCGCTCAAGAGCAAGGCCACTTCGCTGGAGGTGGAAAACTCCACGCTC
AAGACGCAGATCGATTTGTTAAGGCGCGGCTCTTTTCTTGATTTTGATTC
TGCCTTGACTGCATCCATATCGGGTTCTACCACTAACTAA
back to top