Gchil8504.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8504.t1
Unique Name	Gchil8504.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	490

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000116_pilon	contig	tig00000116_pilon:223415..224884 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703608.1
PFAMs	Lipase3_N,Lipase_3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13806
KEGG Pathway	ko04723,ko04745,ko04925,map04723,map04745,map04925
Evalue	4.14e-24
EggNOG OGs	KOG2088@1\|root,KOG2088@2759\|Eukaryota
Description	retrograde trans-synaptic signaling by lipid
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8504	Gchil8504	Gracilaria chilensis NLEC103_M9 male	gene	tig00000116_pilon 223415..224884 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8504.t1.start1	Gchil8504.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000116_pilon 223415..223417 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8504.t1.CDS1	Gchil8504.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000116_pilon 223415..224884 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8504.t1.exon1	Gchil8504.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000116_pilon 223415..224884 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8504.t1.stop1	Gchil8504.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000116_pilon 224882..224884 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8504.t1	Gchil8504.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000116_pilon 223415..224884 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000116_pilon:223415..224884+
coding sequence from alignment at tig00000116_pilon:223415..224884+

mRNA sequence

>Gchil8504.t1 ID=Gchil8504.t1|Name=Gchil8504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=490bp
MSALVGLGPLLDPSALATIARQLWAARDRLNLRMRGNIPSAPELYLAFHA
HMTECDRLRLQQAQSRPDSYAQLAALPPPPATESPPDVVELMRYLSLADA
AYARTLEAQSLVLEQLGVEEALECRLMAEKWCPGYFICFDKEREHLILSI
RGSKEMSDFITNLSADMEPFLSEYGHQGVVRSAQRLFHQLLPVLMQFSDI
FKPNAFVVVGHSLGGAVASAFTMLLRQTAHDDRSIKRPLRYPTCYAFAPP
PCLSERLAEHSESCDITTVVTHLDLVPRLSAASVDRLLIKLSRFDWGRNL
SSSVGRAVESVASTFMRPETARGISQTVASTGTATMALASAGIRYQARSA
LEAPRSRQPSSLWNMALNATIMMTSMLNQSLEGNRQRRRTEDVNGNYAFA
REFGMSERDVHEELGDQPTDVFLAGKVWHLDRAFSDAAERGEDGEGIAPS
VLVRRERGFFRDVELSQWMVHDHNPRTTMAALRHLEERT*

spliced messenger RNA

>Gchil8504.t1 ID=Gchil8504.t1|Name=Gchil8504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000116_pilon:223415..224884+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCGCTCGTCGGGCTCGGGCCGCTGCTCGACCCGTCCGCGCTCGC
CACCATCGCCCGTCAGCTCTGGGCGGCGCGCGACCGTCTCAACCTACGCA
TGCGCGGCAACATCCCGTCGGCCCCTGAGCTCTACCTCGCCTTTCACGCC
CACATGACCGAGTGCGACCGTCTGCGTCTGCAGCAGGCGCAAAGCCGACC
GGACTCATACGCCCAGCTTGCTGCTTTGCCGCCGCCCCCCGCCACGGAGA
GTCCTCCGGACGTTGTAGAGCTCATGCGCTATTTGTCCCTGGCTGATGCC
GCGTATGCGAGGACTCTGGAGGCACAAAGCCTTGTCTTGGAGCAGCTCGG
CGTCGAAGAGGCGCTTGAGTGTCGCCTCATGGCTGAAAAATGGTGCCCTG
GCTACTTCATCTGTTTTGACAAAGAGAGGGAGCACTTGATACTCTCCATT
CGTGGCTCCAAGGAGATGTCCGACTTCATCACCAATCTCAGCGCCGACAT
GGAACCGTTTTTGTCCGAATATGGTCATCAGGGTGTAGTACGCTCTGCCC
AGCGCCTATTTCATCAGCTGCTACCGGTTCTTATGCAATTCAGCGATATC
TTCAAACCGAACGCCTTCGTGGTGGTTGGGCACTCTTTGGGCGGTGCCGT
GGCGTCGGCGTTCACCATGCTGCTGAGACAGACTGCGCACGACGACCGCT
CCATCAAAAGACCGCTTCGATACCCCACGTGTTACGCTTTTGCGCCACCG
CCGTGTTTATCCGAACGGCTTGCGGAGCATTCTGAAAGCTGTGACATAAC
CACCGTGGTCACGCACCTGGACCTTGTGCCACGTCTTTCGGCCGCCTCGG
TCGATCGGCTGTTGATCAAGCTGTCGCGTTTCGATTGGGGAAGAAACCTT
AGCTCGTCGGTGGGACGCGCCGTGGAGTCGGTAGCGTCGACTTTCATGCG
CCCAGAGACAGCGAGAGGCATCTCGCAGACGGTGGCATCAACGGGCACGG
CCACAATGGCATTGGCGAGCGCGGGTATCAGATATCAAGCACGCTCGGCA
CTGGAGGCGCCGCGCTCGCGACAGCCAAGCTCGCTGTGGAACATGGCACT
GAACGCCACCATCATGATGACGTCGATGCTGAATCAAAGTCTGGAAGGAA
ACCGGCAGCGACGGCGGACAGAGGATGTCAACGGAAACTATGCATTTGCG
CGAGAGTTTGGAATGAGCGAACGCGACGTGCACGAAGAGCTGGGCGACCA
GCCGACGGACGTGTTCCTAGCGGGAAAGGTGTGGCATTTGGACCGGGCGT
TCTCGGACGCGGCGGAGCGAGGGGAGGATGGAGAAGGGATTGCGCCGAGC
GTACTGGTGAGAAGAGAGCGCGGCTTTTTCCGCGATGTGGAGCTGTCGCA
GTGGATGGTACACGATCACAACCCGCGGACGACGATGGCGGCGCTGCGGC
ATCTGGAAGAGAGGACGTGA

protein sequence of Gchil8504.t1

>Gchil8504.t1 ID=Gchil8504.t1|Name=Gchil8504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=490bp
MSALVGLGPLLDPSALATIARQLWAARDRLNLRMRGNIPSAPELYLAFHA
HMTECDRLRLQQAQSRPDSYAQLAALPPPPATESPPDVVELMRYLSLADA
AYARTLEAQSLVLEQLGVEEALECRLMAEKWCPGYFICFDKEREHLILSI
RGSKEMSDFITNLSADMEPFLSEYGHQGVVRSAQRLFHQLLPVLMQFSDI
FKPNAFVVVGHSLGGAVASAFTMLLRQTAHDDRSIKRPLRYPTCYAFAPP
PCLSERLAEHSESCDITTVVTHLDLVPRLSAASVDRLLIKLSRFDWGRNL
SSSVGRAVESVASTFMRPETARGISQTVASTGTATMALASAGIRYQARSA
LEAPRSRQPSSLWNMALNATIMMTSMLNQSLEGNRQRRRTEDVNGNYAFA
REFGMSERDVHEELGDQPTDVFLAGKVWHLDRAFSDAAERGEDGEGIAPS
VLVRRERGFFRDVELSQWMVHDHNPRTTMAALRHLEERT*

mRNA from alignment at tig00000116_pilon:223415..224884+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8504.t1 ID=Gchil8504.t1|Name=Gchil8504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1470bp|location=Sequence derived from alignment at tig00000116_pilon:223415..224884+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCGCTCGTCGGGCTCGGGCCGCTGCTCGACCCGTCCGCGCTCGC
CACCATCGCCCGTCAGCTCTGGGCGGCGCGCGACCGTCTCAACCTACGCA
TGCGCGGCAACATCCCGTCGGCCCCTGAGCTCTACCTCGCCTTTCACGCC
CACATGACCGAGTGCGACCGTCTGCGTCTGCAGCAGGCGCAAAGCCGACC
GGACTCATACGCCCAGCTTGCTGCTTTGCCGCCGCCCCCCGCCACGGAGA
GTCCTCCGGACGTTGTAGAGCTCATGCGCTATTTGTCCCTGGCTGATGCC
GCGTATGCGAGGACTCTGGAGGCACAAAGCCTTGTCTTGGAGCAGCTCGG
CGTCGAAGAGGCGCTTGAGTGTCGCCTCATGGCTGAAAAATGGTGCCCTG
GCTACTTCATCTGTTTTGACAAAGAGAGGGAGCACTTGATACTCTCCATT
CGTGGCTCCAAGGAGATGTCCGACTTCATCACCAATCTCAGCGCCGACAT
GGAACCGTTTTTGTCCGAATATGGTCATCAGGGTGTAGTACGCTCTGCCC
AGCGCCTATTTCATCAGCTGCTACCGGTTCTTATGCAATTCAGCGATATC
TTCAAACCGAACGCCTTCGTGGTGGTTGGGCACTCTTTGGGCGGTGCCGT
GGCGTCGGCGTTCACCATGCTGCTGAGACAGACTGCGCACGACGACCGCT
CCATCAAAAGACCGCTTCGATACCCCACGTGTTACGCTTTTGCGCCACCG
CCGTGTTTATCCGAACGGCTTGCGGAGCATTCTGAAAGCTGTGACATAAC
CACCGTGGTCACGCACCTGGACCTTGTGCCACGTCTTTCGGCCGCCTCGG
TCGATCGGCTGTTGATCAAGCTGTCGCGTTTCGATTGGGGAAGAAACCTT
AGCTCGTCGGTGGGACGCGCCGTGGAGTCGGTAGCGTCGACTTTCATGCG
CCCAGAGACAGCGAGAGGCATCTCGCAGACGGTGGCATCAACGGGCACGG
CCACAATGGCATTGGCGAGCGCGGGTATCAGATATCAAGCACGCTCGGCA
CTGGAGGCGCCGCGCTCGCGACAGCCAAGCTCGCTGTGGAACATGGCACT
GAACGCCACCATCATGATGACGTCGATGCTGAATCAAAGTCTGGAAGGAA
ACCGGCAGCGACGGCGGACAGAGGATGTCAACGGAAACTATGCATTTGCG
CGAGAGTTTGGAATGAGCGAACGCGACGTGCACGAAGAGCTGGGCGACCA
GCCGACGGACGTGTTCCTAGCGGGAAAGGTGTGGCATTTGGACCGGGCGT
TCTCGGACGCGGCGGAGCGAGGGGAGGATGGAGAAGGGATTGCGCCGAGC
GTACTGGTGAGAAGAGAGCGCGGCTTTTTCCGCGATGTGGAGCTGTCGCA
GTGGATGGTACACGATCACAACCCGCGGACGACGATGGCGGCGCTGCGGC
ATCTGGAAGAGAGGACGTGA

Coding sequence (CDS) from alignment at tig00000116_pilon:223415..224884+

>Gchil8504.t1 ID=Gchil8504.t1|Name=Gchil8504.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1470bp|location=Sequence derived from alignment at tig00000116_pilon:223415..224884+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCGCTCGTCGGGCTCGGGCCGCTGCTCGACCCGTCCGCGCTCGC
CACCATCGCCCGTCAGCTCTGGGCGGCGCGCGACCGTCTCAACCTACGCA
TGCGCGGCAACATCCCGTCGGCCCCTGAGCTCTACCTCGCCTTTCACGCC
CACATGACCGAGTGCGACCGTCTGCGTCTGCAGCAGGCGCAAAGCCGACC
GGACTCATACGCCCAGCTTGCTGCTTTGCCGCCGCCCCCCGCCACGGAGA
GTCCTCCGGACGTTGTAGAGCTCATGCGCTATTTGTCCCTGGCTGATGCC
GCGTATGCGAGGACTCTGGAGGCACAAAGCCTTGTCTTGGAGCAGCTCGG
CGTCGAAGAGGCGCTTGAGTGTCGCCTCATGGCTGAAAAATGGTGCCCTG
GCTACTTCATCTGTTTTGACAAAGAGAGGGAGCACTTGATACTCTCCATT
CGTGGCTCCAAGGAGATGTCCGACTTCATCACCAATCTCAGCGCCGACAT
GGAACCGTTTTTGTCCGAATATGGTCATCAGGGTGTAGTACGCTCTGCCC
AGCGCCTATTTCATCAGCTGCTACCGGTTCTTATGCAATTCAGCGATATC
TTCAAACCGAACGCCTTCGTGGTGGTTGGGCACTCTTTGGGCGGTGCCGT
GGCGTCGGCGTTCACCATGCTGCTGAGACAGACTGCGCACGACGACCGCT
CCATCAAAAGACCGCTTCGATACCCCACGTGTTACGCTTTTGCGCCACCG
CCGTGTTTATCCGAACGGCTTGCGGAGCATTCTGAAAGCTGTGACATAAC
CACCGTGGTCACGCACCTGGACCTTGTGCCACGTCTTTCGGCCGCCTCGG
TCGATCGGCTGTTGATCAAGCTGTCGCGTTTCGATTGGGGAAGAAACCTT
AGCTCGTCGGTGGGACGCGCCGTGGAGTCGGTAGCGTCGACTTTCATGCG
CCCAGAGACAGCGAGAGGCATCTCGCAGACGGTGGCATCAACGGGCACGG
CCACAATGGCATTGGCGAGCGCGGGTATCAGATATCAAGCACGCTCGGCA
CTGGAGGCGCCGCGCTCGCGACAGCCAAGCTCGCTGTGGAACATGGCACT
GAACGCCACCATCATGATGACGTCGATGCTGAATCAAAGTCTGGAAGGAA
ACCGGCAGCGACGGCGGACAGAGGATGTCAACGGAAACTATGCATTTGCG
CGAGAGTTTGGAATGAGCGAACGCGACGTGCACGAAGAGCTGGGCGACCA
GCCGACGGACGTGTTCCTAGCGGGAAAGGTGTGGCATTTGGACCGGGCGT
TCTCGGACGCGGCGGAGCGAGGGGAGGATGGAGAAGGGATTGCGCCGAGC
GTACTGGTGAGAAGAGAGCGCGGCTTTTTCCGCGATGTGGAGCTGTCGCA
GTGGATGGTACACGATCACAACCCGCGGACGACGATGGCGGCGCTGCGGC
ATCTGGAAGAGAGGACGTGA