Gchil8498.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8498.t1
Unique NameGchil8498.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length577
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:178010..179740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM153CT
Max annot lvl45157.CMM153CT|-
KEGG koko:K16075
KEGG TC1.A.35.5
Evalue2.2e-63
EggNOG OGsKOG2662@1|root,KOG2662@2759|Eukaryota
Descriptionmagnesium ion transmembrane transporter activity
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8498Gchil8498Gracilaria chilensis NLEC103_M9 malegenetig00000116_pilon 178010..179740 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8498.t1.stop1Gchil8498.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000116_pilon 178010..178012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8498.t1.CDS1Gchil8498.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000116_pilon 178010..179740 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8498.t1.exon1Gchil8498.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000116_pilon 178010..179740 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8498.t1.start1Gchil8498.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000116_pilon 179738..179740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8498.t1Gchil8498.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000116_pilon 178010..179740 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8498.t1 ID=Gchil8498.t1|Name=Gchil8498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=577bp
MHRATSDPNLSSSPPEPPRIILPTVPAASTTEMVLDAEAYSITALPPDPT
CSPPHSPRPRPSPRPSPVFVPEPTPVSFSEYVASELARDQAQHEHFGVSF
APASRLDHHHNVSSVSQQLPPDPFDSDSDDAAATTTAASLVEHPTDPIPR
SETEPNLPTASPPALPTRPSQKRPHFSHLSAADAAAALPPPSRVRYTDGK
LDCIQIDAKGNVTNRQMRRADILQEARSAFPGSQPPRHIVNKWLNGDAPL
PSPELKHFSRLFEPDAIANRKTAQKALRDYLRNSLQARDIRQVDPAFAAK
PALWVRHSAIVVSLEGLRAIVLYDKMFLFDTEKEKTKKLLYIATQSIMAR
PDAENPQPFEFRALEGILIYLAMGLETEFGSLKPQIEEYLHQMPNELTTK
MLEQLRLKKQQLNQFQARANSVRTVLENLLDEDEEMASMYLTEKHISENY
ARSAVDHSEVETLLEAYLQAIDLHVNQASLLNDGIEDTEDLVMIHLDTLR
NRLLSVELAMSVVSMMFGFGAVVAGVFGMNITIPLFEASASRFWFLAVVM
VITTTVVCVSWMVLVVLRRRGLYSFY*
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spliced messenger RNA

>Gchil8498.t1 ID=Gchil8498.t1|Name=Gchil8498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000116_pilon:178010..179740- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGCGCCACTTCCGACCCGAACCTCTCCAGCTCGCCGCCCGAGCC
GCCGCGCATCATACTACCCACCGTGCCCGCCGCCTCCACCACCGAAATGG
TGCTCGACGCCGAAGCCTACTCCATCACCGCCCTCCCCCCCGATCCCACT
TGCTCTCCCCCCCACTCCCCGCGCCCCCGCCCCTCACCACGCCCCTCGCC
CGTCTTCGTCCCGGAGCCCACCCCCGTTTCCTTCAGCGAGTATGTTGCCT
CCGAGCTGGCGCGCGACCAGGCACAGCACGAACACTTTGGCGTCTCCTTT
GCCCCGGCCTCCAGGCTAGACCACCACCACAACGTCTCCTCCGTGTCGCA
ACAGCTTCCACCCGATCCGTTCGACTCTGATTCGGATGACGCAGCCGCCA
CCACCACCGCCGCCAGTCTAGTTGAACATCCCACCGATCCCATTCCGCGC
TCCGAAACCGAACCCAACTTACCAACCGCCTCGCCCCCCGCGCTTCCCAC
CCGCCCGTCTCAGAAACGTCCGCACTTCTCGCACCTCTCCGCTGCTGACG
CCGCCGCCGCACTCCCACCGCCCAGTCGCGTCCGCTACACCGACGGCAAA
CTGGACTGCATCCAGATTGACGCAAAGGGAAACGTAACCAACCGCCAAAT
GAGGCGCGCCGACATCCTGCAGGAGGCTCGTTCAGCCTTTCCCGGCTCGC
AACCCCCGCGCCACATCGTAAACAAGTGGCTCAACGGAGATGCTCCATTG
CCATCGCCCGAACTCAAACACTTTTCGCGTCTCTTCGAACCAGACGCTAT
CGCCAACCGCAAGACCGCGCAAAAGGCTCTGCGCGATTACTTGCGCAACT
CGTTGCAGGCGCGTGATATTCGTCAGGTCGATCCGGCCTTCGCTGCCAAG
CCGGCCCTGTGGGTGCGACATTCGGCCATTGTTGTTTCTCTTGAGGGCTT
GCGGGCTATCGTTTTGTATGATAAGATGTTCTTGTTTGACACAGAAAAGG
AAAAGACCAAGAAATTGTTGTACATCGCCACGCAGTCTATTATGGCGCGC
CCGGATGCCGAAAATCCTCAGCCGTTTGAGTTTCGCGCCTTGGAGGGCAT
TTTGATCTACCTGGCCATGGGATTGGAGACCGAATTTGGTAGCCTTAAAC
CGCAGATTGAGGAGTATCTGCATCAGATGCCAAATGAGCTGACCACTAAG
ATGTTGGAGCAGCTTCGCTTGAAAAAGCAACAACTCAATCAATTTCAAGC
ACGAGCAAATAGCGTTCGAACCGTCTTGGAAAACCTGTTGGATGAGGATG
AGGAAATGGCCAGCATGTACCTCACTGAGAAGCATATATCGGAAAATTAT
GCGCGAAGCGCCGTAGATCACAGCGAAGTGGAAACTTTGCTTGAAGCGTA
CTTGCAGGCAATAGACCTGCATGTCAATCAAGCCTCTCTTCTCAACGATG
GCATTGAGGACACAGAGGATCTGGTCATGATTCATCTGGACACATTGCGA
AATAGGCTGCTCTCTGTAGAGCTCGCCATGAGTGTTGTCAGTATGATGTT
TGGTTTTGGCGCCGTTGTGGCTGGTGTGTTTGGAATGAATATTACCATTC
CCCTGTTTGAAGCTTCCGCCAGTCGTTTTTGGTTTTTGGCCGTTGTGATG
GTAATCACTACAACAGTTGTGTGTGTTTCGTGGATGGTGTTGGTGGTTTT
GCGGCGGCGAGGCTTGTACAGTTTTTATTAG
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protein sequence of Gchil8498.t1

>Gchil8498.t1 ID=Gchil8498.t1|Name=Gchil8498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=577bp
MHRATSDPNLSSSPPEPPRIILPTVPAASTTEMVLDAEAYSITALPPDPT
CSPPHSPRPRPSPRPSPVFVPEPTPVSFSEYVASELARDQAQHEHFGVSF
APASRLDHHHNVSSVSQQLPPDPFDSDSDDAAATTTAASLVEHPTDPIPR
SETEPNLPTASPPALPTRPSQKRPHFSHLSAADAAAALPPPSRVRYTDGK
LDCIQIDAKGNVTNRQMRRADILQEARSAFPGSQPPRHIVNKWLNGDAPL
PSPELKHFSRLFEPDAIANRKTAQKALRDYLRNSLQARDIRQVDPAFAAK
PALWVRHSAIVVSLEGLRAIVLYDKMFLFDTEKEKTKKLLYIATQSIMAR
PDAENPQPFEFRALEGILIYLAMGLETEFGSLKPQIEEYLHQMPNELTTK
MLEQLRLKKQQLNQFQARANSVRTVLENLLDEDEEMASMYLTEKHISENY
ARSAVDHSEVETLLEAYLQAIDLHVNQASLLNDGIEDTEDLVMIHLDTLR
NRLLSVELAMSVVSMMFGFGAVVAGVFGMNITIPLFEASASRFWFLAVVM
VITTTVVCVSWMVLVVLRRRGLYSFY*
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mRNA from alignment at tig00000116_pilon:178010..179740-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8498.t1 ID=Gchil8498.t1|Name=Gchil8498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000116_pilon:178010..179740- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGCGCCACTTCCGACCCGAACCTCTCCAGCTCGCCGCCCGAGCC
GCCGCGCATCATACTACCCACCGTGCCCGCCGCCTCCACCACCGAAATGG
TGCTCGACGCCGAAGCCTACTCCATCACCGCCCTCCCCCCCGATCCCACT
TGCTCTCCCCCCCACTCCCCGCGCCCCCGCCCCTCACCACGCCCCTCGCC
CGTCTTCGTCCCGGAGCCCACCCCCGTTTCCTTCAGCGAGTATGTTGCCT
CCGAGCTGGCGCGCGACCAGGCACAGCACGAACACTTTGGCGTCTCCTTT
GCCCCGGCCTCCAGGCTAGACCACCACCACAACGTCTCCTCCGTGTCGCA
ACAGCTTCCACCCGATCCGTTCGACTCTGATTCGGATGACGCAGCCGCCA
CCACCACCGCCGCCAGTCTAGTTGAACATCCCACCGATCCCATTCCGCGC
TCCGAAACCGAACCCAACTTACCAACCGCCTCGCCCCCCGCGCTTCCCAC
CCGCCCGTCTCAGAAACGTCCGCACTTCTCGCACCTCTCCGCTGCTGACG
CCGCCGCCGCACTCCCACCGCCCAGTCGCGTCCGCTACACCGACGGCAAA
CTGGACTGCATCCAGATTGACGCAAAGGGAAACGTAACCAACCGCCAAAT
GAGGCGCGCCGACATCCTGCAGGAGGCTCGTTCAGCCTTTCCCGGCTCGC
AACCCCCGCGCCACATCGTAAACAAGTGGCTCAACGGAGATGCTCCATTG
CCATCGCCCGAACTCAAACACTTTTCGCGTCTCTTCGAACCAGACGCTAT
CGCCAACCGCAAGACCGCGCAAAAGGCTCTGCGCGATTACTTGCGCAACT
CGTTGCAGGCGCGTGATATTCGTCAGGTCGATCCGGCCTTCGCTGCCAAG
CCGGCCCTGTGGGTGCGACATTCGGCCATTGTTGTTTCTCTTGAGGGCTT
GCGGGCTATCGTTTTGTATGATAAGATGTTCTTGTTTGACACAGAAAAGG
AAAAGACCAAGAAATTGTTGTACATCGCCACGCAGTCTATTATGGCGCGC
CCGGATGCCGAAAATCCTCAGCCGTTTGAGTTTCGCGCCTTGGAGGGCAT
TTTGATCTACCTGGCCATGGGATTGGAGACCGAATTTGGTAGCCTTAAAC
CGCAGATTGAGGAGTATCTGCATCAGATGCCAAATGAGCTGACCACTAAG
ATGTTGGAGCAGCTTCGCTTGAAAAAGCAACAACTCAATCAATTTCAAGC
ACGAGCAAATAGCGTTCGAACCGTCTTGGAAAACCTGTTGGATGAGGATG
AGGAAATGGCCAGCATGTACCTCACTGAGAAGCATATATCGGAAAATTAT
GCGCGAAGCGCCGTAGATCACAGCGAAGTGGAAACTTTGCTTGAAGCGTA
CTTGCAGGCAATAGACCTGCATGTCAATCAAGCCTCTCTTCTCAACGATG
GCATTGAGGACACAGAGGATCTGGTCATGATTCATCTGGACACATTGCGA
AATAGGCTGCTCTCTGTAGAGCTCGCCATGAGTGTTGTCAGTATGATGTT
TGGTTTTGGCGCCGTTGTGGCTGGTGTGTTTGGAATGAATATTACCATTC
CCCTGTTTGAAGCTTCCGCCAGTCGTTTTTGGTTTTTGGCCGTTGTGATG
GTAATCACTACAACAGTTGTGTGTGTTTCGTGGATGGTGTTGGTGGTTTT
GCGGCGGCGAGGCTTGTACAGTTTTTATTAG
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Coding sequence (CDS) from alignment at tig00000116_pilon:178010..179740-

>Gchil8498.t1 ID=Gchil8498.t1|Name=Gchil8498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1731bp|location=Sequence derived from alignment at tig00000116_pilon:178010..179740- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGCGCCACTTCCGACCCGAACCTCTCCAGCTCGCCGCCCGAGCC
GCCGCGCATCATACTACCCACCGTGCCCGCCGCCTCCACCACCGAAATGG
TGCTCGACGCCGAAGCCTACTCCATCACCGCCCTCCCCCCCGATCCCACT
TGCTCTCCCCCCCACTCCCCGCGCCCCCGCCCCTCACCACGCCCCTCGCC
CGTCTTCGTCCCGGAGCCCACCCCCGTTTCCTTCAGCGAGTATGTTGCCT
CCGAGCTGGCGCGCGACCAGGCACAGCACGAACACTTTGGCGTCTCCTTT
GCCCCGGCCTCCAGGCTAGACCACCACCACAACGTCTCCTCCGTGTCGCA
ACAGCTTCCACCCGATCCGTTCGACTCTGATTCGGATGACGCAGCCGCCA
CCACCACCGCCGCCAGTCTAGTTGAACATCCCACCGATCCCATTCCGCGC
TCCGAAACCGAACCCAACTTACCAACCGCCTCGCCCCCCGCGCTTCCCAC
CCGCCCGTCTCAGAAACGTCCGCACTTCTCGCACCTCTCCGCTGCTGACG
CCGCCGCCGCACTCCCACCGCCCAGTCGCGTCCGCTACACCGACGGCAAA
CTGGACTGCATCCAGATTGACGCAAAGGGAAACGTAACCAACCGCCAAAT
GAGGCGCGCCGACATCCTGCAGGAGGCTCGTTCAGCCTTTCCCGGCTCGC
AACCCCCGCGCCACATCGTAAACAAGTGGCTCAACGGAGATGCTCCATTG
CCATCGCCCGAACTCAAACACTTTTCGCGTCTCTTCGAACCAGACGCTAT
CGCCAACCGCAAGACCGCGCAAAAGGCTCTGCGCGATTACTTGCGCAACT
CGTTGCAGGCGCGTGATATTCGTCAGGTCGATCCGGCCTTCGCTGCCAAG
CCGGCCCTGTGGGTGCGACATTCGGCCATTGTTGTTTCTCTTGAGGGCTT
GCGGGCTATCGTTTTGTATGATAAGATGTTCTTGTTTGACACAGAAAAGG
AAAAGACCAAGAAATTGTTGTACATCGCCACGCAGTCTATTATGGCGCGC
CCGGATGCCGAAAATCCTCAGCCGTTTGAGTTTCGCGCCTTGGAGGGCAT
TTTGATCTACCTGGCCATGGGATTGGAGACCGAATTTGGTAGCCTTAAAC
CGCAGATTGAGGAGTATCTGCATCAGATGCCAAATGAGCTGACCACTAAG
ATGTTGGAGCAGCTTCGCTTGAAAAAGCAACAACTCAATCAATTTCAAGC
ACGAGCAAATAGCGTTCGAACCGTCTTGGAAAACCTGTTGGATGAGGATG
AGGAAATGGCCAGCATGTACCTCACTGAGAAGCATATATCGGAAAATTAT
GCGCGAAGCGCCGTAGATCACAGCGAAGTGGAAACTTTGCTTGAAGCGTA
CTTGCAGGCAATAGACCTGCATGTCAATCAAGCCTCTCTTCTCAACGATG
GCATTGAGGACACAGAGGATCTGGTCATGATTCATCTGGACACATTGCGA
AATAGGCTGCTCTCTGTAGAGCTCGCCATGAGTGTTGTCAGTATGATGTT
TGGTTTTGGCGCCGTTGTGGCTGGTGTGTTTGGAATGAATATTACCATTC
CCCTGTTTGAAGCTTCCGCCAGTCGTTTTTGGTTTTTGGCCGTTGTGATG
GTAATCACTACAACAGTTGTGTGTGTTTCGTGGATGGTGTTGGTGGTTTT
GCGGCGGCGAGGCTTGTACAGTTTTTATTAG
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