Gchil8492.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8492.t1
Unique Name	Gchil8492.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	269

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000116_pilon	contig	tig00000116_pilon:93410..94216 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707731.1
PFAMs	PQ-loop
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09660
GOs	GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0019538,GO:0034645,GO:0036211,GO:0043170,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0070085,GO:0071704,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	2.3e-52
EggNOG OGs	KOG3211@1\|root,KOG3211@2759\|Eukaryota
Description	dolichol-linked oligosaccharide biosynthetic process
COG category	S
BRITE	ko00000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8492	Gchil8492	Gracilaria chilensis NLEC103_M9 male	gene	tig00000116_pilon 93410..94216 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8492.t1.start1	Gchil8492.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000116_pilon 93410..93412 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8492.t1.CDS1	Gchil8492.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000116_pilon 93410..94216 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8492.t1.exon1	Gchil8492.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000116_pilon 93410..94216 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8492.t1.stop1	Gchil8492.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000116_pilon 94214..94216 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8492.t1	Gchil8492.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000116_pilon 93410..94216 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000116_pilon:93410..94216+
coding sequence from alignment at tig00000116_pilon:93410..94216+

mRNA sequence

>Gchil8492.t1 ID=Gchil8492.t1|Name=Gchil8492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=269bp
MDAVNPATAVADAMGALEGSWQTAADALIHRVLPPVCPRPASPLHLPGLL
LSDTVCLRASLSLAIGFAIVIFAGLIKLPQIATIVSNKSVAGLTVTTFLV
ETFGYTYNLAAHFRQNYPLSTYGDFFVLIFQNYVILYLFFMYSATPTKGI
FIIIAYAVALAFMCSPYFPLSVLQLMTLGNVMVVVLGRTPQIYANYVNKS
TGALSIFTCWGIFLGALARIFTTLQDVDSLNILLGYLASATLNGTIAFQT
IYYNFIMRKPAKHQKKSE*

spliced messenger RNA

>Gchil8492.t1 ID=Gchil8492.t1|Name=Gchil8492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000116_pilon:93410..94216+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCGTAAACCCCGCGACCGCCGTCGCCGACGCTATGGGAGCGCT
CGAGGGCTCGTGGCAAACCGCCGCAGACGCACTCATCCACCGCGTGCTTC
CGCCCGTGTGCCCCCGCCCCGCCAGCCCGCTCCATCTACCCGGCCTCTTG
CTCTCCGACACCGTCTGCCTCCGAgcctctctatcgctcgccatcggctt
cgccatcgTAATCTTCGCCGGCCTCATCAAGCTTCCGCAAATCGCTACAA
TCGTGTCCAACAAATCCGTCGCCGGCCTCACCGTCACCACCTTTCTCGTG
GAAACCTTTGGCTACACCTACAATCTCGCAGCCCATTTCCGACAAAACTA
CCCGCTCTCCACCTACGGCGATTTCTTCGTCCTCATCTTTCAAAACTATG
TCATTCTGTACCTCTTCTTTATGTACTCCGCCACCCCCACCAAGGGCATT
TTCATCATTATCGCCTACGCCGTTGCGCTTGCCTTCATGTGCAGCCCATA
CTTTCCGCTCTCTGTGCTGCAGCTCATGACGCTGGGAAACGTCATGGTGG
TTGTGCTAGGCAGAACCCCGCAGATCTACGCCAACTACGTTAACAAATCT
ACTGGGGCCCTCAGTATCTTCACCTGTTGGGGCATCTTCCTAGGGGCACT
TGCAAGAATATTCACCACCTTGCAGGATGTCGACAGCTTAAACATCCTCC
TCGGCTACCTGGCATCGGCCACTCTTAACGGCACAATAGCCTTCCAAACC
ATCTACTACAACTTCATCATGAGAAAACCCGCCAAACACCAAAAGAAGTC
CGAGTAA

protein sequence of Gchil8492.t1

>Gchil8492.t1 ID=Gchil8492.t1|Name=Gchil8492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=269bp
MDAVNPATAVADAMGALEGSWQTAADALIHRVLPPVCPRPASPLHLPGLL
LSDTVCLRASLSLAIGFAIVIFAGLIKLPQIATIVSNKSVAGLTVTTFLV
ETFGYTYNLAAHFRQNYPLSTYGDFFVLIFQNYVILYLFFMYSATPTKGI
FIIIAYAVALAFMCSPYFPLSVLQLMTLGNVMVVVLGRTPQIYANYVNKS
TGALSIFTCWGIFLGALARIFTTLQDVDSLNILLGYLASATLNGTIAFQT
IYYNFIMRKPAKHQKKSE*

mRNA from alignment at tig00000116_pilon:93410..94216+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8492.t1 ID=Gchil8492.t1|Name=Gchil8492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000116_pilon:93410..94216+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCCGTAAACCCCGCGACCGCCGTCGCCGACGCTATGGGAGCGCT
CGAGGGCTCGTGGCAAACCGCCGCAGACGCACTCATCCACCGCGTGCTTC
CGCCCGTGTGCCCCCGCCCCGCCAGCCCGCTCCATCTACCCGGCCTCTTG
CTCTCCGACACCGTCTGCCTCCGAgcctctctatcgctcgccatcggctt
cgccatcgTAATCTTCGCCGGCCTCATCAAGCTTCCGCAAATCGCTACAA
TCGTGTCCAACAAATCCGTCGCCGGCCTCACCGTCACCACCTTTCTCGTG
GAAACCTTTGGCTACACCTACAATCTCGCAGCCCATTTCCGACAAAACTA
CCCGCTCTCCACCTACGGCGATTTCTTCGTCCTCATCTTTCAAAACTATG
TCATTCTGTACCTCTTCTTTATGTACTCCGCCACCCCCACCAAGGGCATT
TTCATCATTATCGCCTACGCCGTTGCGCTTGCCTTCATGTGCAGCCCATA
CTTTCCGCTCTCTGTGCTGCAGCTCATGACGCTGGGAAACGTCATGGTGG
TTGTGCTAGGCAGAACCCCGCAGATCTACGCCAACTACGTTAACAAATCT
ACTGGGGCCCTCAGTATCTTCACCTGTTGGGGCATCTTCCTAGGGGCACT
TGCAAGAATATTCACCACCTTGCAGGATGTCGACAGCTTAAACATCCTCC
TCGGCTACCTGGCATCGGCCACTCTTAACGGCACAATAGCCTTCCAAACC
ATCTACTACAACTTCATCATGAGAAAACCCGCCAAACACCAAAAGAAGTC
CGAGTAA

Coding sequence (CDS) from alignment at tig00000116_pilon:93410..94216+

>Gchil8492.t1 ID=Gchil8492.t1|Name=Gchil8492.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00000116_pilon:93410..94216+ (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCCGTAAACCCCGCGACCGCCGTCGCCGACGCTATGGGAGCGCT
CGAGGGCTCGTGGCAAACCGCCGCAGACGCACTCATCCACCGCGTGCTTC
CGCCCGTGTGCCCCCGCCCCGCCAGCCCGCTCCATCTACCCGGCCTCTTG
CTCTCCGACACCGTCTGCCTCCGAgcctctctatcgctcgccatcggctt
cgccatcgTAATCTTCGCCGGCCTCATCAAGCTTCCGCAAATCGCTACAA
TCGTGTCCAACAAATCCGTCGCCGGCCTCACCGTCACCACCTTTCTCGTG
GAAACCTTTGGCTACACCTACAATCTCGCAGCCCATTTCCGACAAAACTA
CCCGCTCTCCACCTACGGCGATTTCTTCGTCCTCATCTTTCAAAACTATG
TCATTCTGTACCTCTTCTTTATGTACTCCGCCACCCCCACCAAGGGCATT
TTCATCATTATCGCCTACGCCGTTGCGCTTGCCTTCATGTGCAGCCCATA
CTTTCCGCTCTCTGTGCTGCAGCTCATGACGCTGGGAAACGTCATGGTGG
TTGTGCTAGGCAGAACCCCGCAGATCTACGCCAACTACGTTAACAAATCT
ACTGGGGCCCTCAGTATCTTCACCTGTTGGGGCATCTTCCTAGGGGCACT
TGCAAGAATATTCACCACCTTGCAGGATGTCGACAGCTTAAACATCCTCC
TCGGCTACCTGGCATCGGCCACTCTTAACGGCACAATAGCCTTCCAAACC
ATCTACTACAACTTCATCATGAGAAAACCCGCCAAACACCAAAAGAAGTC
CGAGTAA