Gchil849.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil849.t1
Unique NameGchil849.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:465677..467179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil849Gchil849Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 465677..467183 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil849.t1.start1Gchil849.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 465677..465679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil849.t1.CDS1Gchil849.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 465677..465869 +
Gchil849.t1.CDS2Gchil849.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 466672..466731 +
Gchil849.t1.CDS3Gchil849.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 466808..466840 +
Gchil849.t1.CDS4Gchil849.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 466919..466963 +
Gchil849.t1.CDS5Gchil849.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 467047..467080 +
Gchil849.t1.CDS6Gchil849.t1.CDS6Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 467170..467179 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil849.t1.exon1Gchil849.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 465677..465869 +
Gchil849.t1.exon2Gchil849.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 466672..466731 +
Gchil849.t1.exon3Gchil849.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 466808..466840 +
Gchil849.t1.exon4Gchil849.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 466919..466963 +
Gchil849.t1.exon5Gchil849.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 467047..467080 +
Gchil849.t1.exon6Gchil849.t1.exon6Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 467170..467179 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil849.t1.intron1Gchil849.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 465870..466671 +
Gchil849.t1.intron2Gchil849.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 466732..466807 +
Gchil849.t1.intron3Gchil849.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 466841..466918 +
Gchil849.t1.intron4Gchil849.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 466964..467046 +
Gchil849.t1.intron5Gchil849.t1.intron5Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 467081..467169 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil849.t1.stop1Gchil849.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 467177..467179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil849.t1Gchil849.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 465677..467179 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil849.t1 ID=Gchil849.t1|Name=Gchil849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=125bp
MALHRLSARFGPTDVLVQTDAVLSSQSAEDAEFPDFLPVPFQSVTQHFSL
ARFRPQGPDFLTDAERLGEEGDILEGLGRARFLGVVDREMVASKIRRQDW
TRGRISGRYRVGARQGAHIWESNL*
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spliced messenger RNA

>Gchil849.t1 ID=Gchil849.t1|Name=Gchil849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=375bp|location=Sequence derived from alignment at tig00000017_pilon:465677..467179+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggcactgcatcgcctctccgcccgctttggccctactgacgttcttgt
gcaaaccgatgccgtcctttcctcccagagcgccgaggatgccgagtttc
ccgacttcctgcccgtgccttttcagtccgtcactcaacacttcagcttg
gcgcgcttccgcccccaaggccctgactttctcaccgacgctgagcgatt
aggtgaagagggggacattctggaaggactgggccgagcaaggttcttag
gagtggttgatcgggaaatggtggcatcaaagataaggaggcaagattgg
acaagaggtaggataagtggtcgctatagagtgggagcaagacaaggagc
acatatttgggagagtaatttgtga
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protein sequence of Gchil849.t1

>Gchil849.t1 ID=Gchil849.t1|Name=Gchil849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=125bp
MALHRLSARFGPTDVLVQTDAVLSSQSAEDAEFPDFLPVPFQSVTQHFSL
ARFRPQGPDFLTDAERLGEEGDILEGLGRARFLGVVDREMVASKIRRQDW
TRGRISGRYRVGARQGAHIWESNL*
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mRNA from alignment at tig00000017_pilon:465677..467179+

Legend: start_codonpolypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil849.t1 ID=Gchil849.t1|Name=Gchil849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at tig00000017_pilon:465677..467179+ (Gracilaria chilensis NLEC103_M9 male)
atggcactgcatcgcctctccgcccgctttggccctactgacgttcttgt
gcaaaccgatgccgtcctttcctcccagagcgccgaggatgccgagtttc
ccgacttcctgcccgtgccttttcagtccgtcactcaacacttcagcttg
gcgcgcttccgcccccaaggccctgactttctcaccgacgctggtatgcc
ctcaccagcttaatctgacgacgcaagatgcaaaatctattttcatccag
attcgtcccctttacgcccatgcctgcaatgccgcgtcaccgcctttcat
cactgtctccgctcgtggcttcgcgtcaaaatcaaggacggtgatttcaa
tcatctctcctgttttctgtgccatgagctcatccccgacgccgaagtga
gaaatatcgtgggagagctcgaattcaaaaggtgtcttttcttttgctcc
aagattcagcatggaagcaaccctaccgcagcatggtgtccaaatgtggg
atgttggaaactgttgcggtgcaatgtgcgtaaactatgcgtcaataccg
cgaacatgacctgcccggattgcgacacgcaggtgtgccctcgatgcttc
agcgaaggtcatggagatgacatgtgtccagtacctaccgtcgccgtccg
agaaaacacactctcccgtatctgggagagggttcacaccaaaaagtgtc
caatatctcgaatatctctagtaacactgtgaagaacgatcgctctagaa
tgtatccaatgcgcaaattgaaatcccaggaaacagagactttagtttac
acaggggatgaggaatccggtttatatcagagaatagcagaaacaactgc
gggggaaacagggcctcctcgaaaacgggcaaagtgcatgattccaagag
ccatagttcctccagcattcgaaagtcctcgcaggcttgtcgaagaatca
ccaatcagacatgttattttttgctgctgcgaagcgacagaaaagagcga
ttaggtgaagagggggacattctggaaggactgggccgagcaaggttctt
aggaggtgagtgcgtcatttaagtaatgtggtttcgatttttggtggaaa
tctgacttatatttctttcttgttacgacagtggttgatcgggaaatggt
ggcatcaaagataagtgcgagcttcattcatatcttgtatgcgttaggga
aggatatctgacttgccgttgtttgctgctgcaagagaacagggaggcaa
gattggacaagaggtaggataagtggtcgctatagaggtgagtgtggtgc
tgatgtggtttgggttttatttgtgacggagatctgactttggtctattt
attgatgcgaatgcacaaagtgggagcaagacaaggagcacatatttggg
agaggtaagtttgtttatatggaatttgcttgcatgaagcgaggaattgg
gctctaacttgtgtgagtttgtgatgtctatctagtaatatagtaatttg
tga
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Coding sequence (CDS) from alignment at tig00000017_pilon:465677..467179+

>Gchil849.t1 ID=Gchil849.t1|Name=Gchil849.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=375bp|location=Sequence derived from alignment at tig00000017_pilon:465677..467179+ (Gracilaria chilensis NLEC103_M9 male)
atggcactgcatcgcctctccgcccgctttggccctactgacgttcttgt
gcaaaccgatgccgtcctttcctcccagagcgccgaggatgccgagtttc
ccgacttcctgcccgtgccttttcagtccgtcactcaacacttcagcttg
gcgcgcttccgcccccaaggccctgactttctcaccgacgctgagcgatt
aggtgaagagggggacattctggaaggactgggccgagcaaggttcttag
gagtggttgatcgggaaatggtggcatcaaagataaggaggcaagattgg
acaagaggtaggataagtggtcgctatagagtgggagcaagacaaggagc
acatatttgggagagtaatttgtga
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