Gchil844.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil844.t1
Unique Name	Gchil844.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	576

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:366236..367963 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	209285.XP_006692761.1
Preferred name	CWC21
PFAMs	cwf21
Max annot lvl	4751\|Fungi
KEGG ko	ko:K13172
Evalue	1.25e-13
EggNOG OGs	KOG1869@1\|root,KOG1869@2759\|Eukaryota,39VWU@33154\|Opisthokonta,3P2WI@4751\|Fungi,3QU86@4890\|Ascomycota,219B4@147550\|Sordariomycetes,3U9D1@5139\|Sordariales,3HDRM@35718\|Chaetomiaceae
Description	cwf21
COG category	A
BRITE	ko00000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil844	Gchil844	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 366236..367963 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil844.t1.start1	Gchil844.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 366236..366238 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil844.t1.CDS1	Gchil844.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 366236..367963 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil844.t1.exon1	Gchil844.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 366236..367963 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil844.t1.stop1	Gchil844.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 367961..367963 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil844.t1	Gchil844.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 366236..367963 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:366236..367963+
coding sequence from alignment at tig00000017_pilon:366236..367963+

mRNA sequence

>Gchil844.t1 ID=Gchil844.t1|Name=Gchil844.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=576bp
MYNGIGLTSTRGTGTSGHVQRNVAALRPQPMRSARHTRKAPSQPRPLPPA
LAEHERRRAVEVAVAELHDELVARRYDEHTIRFMEKRLRQDLLSRDSHER
AAPAPPAAGASLSHLVRHRNDALRAALNVSEHYVPGDAFRRKQPAQTPKP
SVESTPDPPAAAPPQRPHAAPNPKPPSPQPTHSPSSPLSTSLTNQQRPNA
VHVTETNSRPAAHQKPLEVATTAHSNPPPPTPTPKASPHNAKQPNAKPPS
APPPPPPTAEEVPLSVPAPSSTASSRTQSRASSHTPPRAAPLKPPPSPPQ
SASASRSPSPPRRRPSWNASPAPDAYDEKHVPQPLYRGRNRVKQLSVSPA
PRSLHRRRDSRRSIASWSQSSESLRSRSPSPDRYRSRSRRYRNSRSERES
RSPSPRYKRSPSPYRWRRRRKSYDSSPSPERYRPSRYRRSKYLQSPSSPS
VDHRYYRDQARSPSRSVSRSPRRFRSRSPLPMKSRATMRSRSPSPLRERG
YENEDVYGRGRWTERPPYPRSGRDKYDRPSESARDYKRKEYGERENGTSR
KRGGYASPPDEHVPKRRRTSYWDER*

spliced messenger RNA

>Gchil844.t1 ID=Gchil844.t1|Name=Gchil844.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at tig00000017_pilon:366236..367963+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAACGGCATCGGTCTCACCTCCACGCGCGGCACGGGCACCAGCGG
CCACGTACAGCGCAACGTTGCCGCGCTCCGTCCGCAGCCCATGCGCTCTG
CGCGTCACACGCGCAAGGCGCCGTCGCAGCCGCGCCCGCTACCGCCCGCG
CTGGCCGAGCACGAACGCCGCCGCGCCGTCGAGGTTGCCGTCGCCGAATT
ACACGACGAGCTTGTTGCGCGTCGCTATGACGAACACACCATCCGCTTCA
TGGAGAAGCGCCTGAGACAGGATCTGTTGTCGCGTGACTCCCACGAGCGC
GCCGCCCCTGCGCCGCCCGCCGCTGGCGCGTCGCTCTCGCACTTGGTGCG
CCACAGGAATGACGCCCTGCGCGCTGCGCTCAATGTGAGCGAGCACTACG
TCCCCGGCGATGCTTTCCGCCGCAAGCAGCCCGCACAAACTCCGAAGCCC
TCCGTCGAAAGCACACCCGACCCGCCCGCTGCCGCGCCGCCACAGCGCCC
TCACGCCGCCCCCAACCCCAAGCCTCCCAGCCCGCAGCCGACCCACTCGC
CATCCTCGCCGCTTTCAACCTCACTGACCAACCAACAGCGCCCCAACGCT
GTGCACGTCACCGAGACCAACTCGCGCCCCGCTGCCCACCAAAAGCCTTT
AGAGGTAGCCACCACAGCACACTCCAACCCTCCACCACCAACGCCGACAC
CAAAGGCATCACCGCATAACGCCAAACAACCTAACGCCAAACCGCCAAGC
GCCCCACCCCCTCCACCTCCCACCGCTGAAGAGGTACCTCTTTCCGTGCC
GGCTCCCTCGTCAACCGCCTCATCCCGCACTCAGTCGCGCGCCTCCTCTC
ACACCCCACCGCGCGCAGCGCCACTCAAgccgccgccctccccgccacaa
tccgcgtccgcctcgcgctctccgtctccgcctcgccgccgccCATCCTG
GAACGCGTCGCCCGCACCAGATGCATACGATGAAAAGCATGTGCCACAGC
CTCTCTACCGAGGTCGAAACAGAGTCAAGCAGCTATCCGTCTCCCCTGCA
CCGCGCTCGTTGCATCGCCGTCGCGATTCGCGCCGAAGCATAGCGTCTTG
GAGCCAGTCTAGCGAGTCTTTACGTTCGCGTTCCCCTTCCCCGGATCGCT
ACCGCTCTCGTTCCAGGCGATACCGGAACTCTCGCTCTGAACGAGAGTCG
AGATCACCATCTCCGCGCTACAAACGCTCTCCCTCTCCATACAGGTGGCG
GCGGCGCCGAAAATCGTACGACTCATCTCCAAGCCCCGAGCGCTACCGTC
CATCTCGATATCGCCGCTCAAAATATCTACAGTCGCCATCCAGTCCATCT
GTTGACCACAGATATTACAGGGACCAGGCGCGCTCCCCATCACGTTCAGT
GtcgcgctctcctcgtcgctttcgctctcgttcccctctTCCGATGAAAT
CACGAGCTACGATGCGTTCGAGGTCACCCTCCCCGCTTCGAGAGCGTGGG
TACGAAAACGAGGATGTGTATGGTCGAGGACGATGGACAGAACGTCCCCC
GTACCCAAGAAGCGGCCGTGACAAATACGATCGGCCAAGCGAGTCTGCAC
GCGACTACAAGCGTAAGGAATACGGCGAGCGCGAAAACGGGACTAGTCGG
AAGAGAGGTGGATACGCCTCCCCGCCAGACGAACACGTTCCGAAACGTCG
TCGTACCTCATACTGGGACGAACGCTAG

protein sequence of Gchil844.t1

>Gchil844.t1 ID=Gchil844.t1|Name=Gchil844.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=576bp
MYNGIGLTSTRGTGTSGHVQRNVAALRPQPMRSARHTRKAPSQPRPLPPA
LAEHERRRAVEVAVAELHDELVARRYDEHTIRFMEKRLRQDLLSRDSHER
AAPAPPAAGASLSHLVRHRNDALRAALNVSEHYVPGDAFRRKQPAQTPKP
SVESTPDPPAAAPPQRPHAAPNPKPPSPQPTHSPSSPLSTSLTNQQRPNA
VHVTETNSRPAAHQKPLEVATTAHSNPPPPTPTPKASPHNAKQPNAKPPS
APPPPPPTAEEVPLSVPAPSSTASSRTQSRASSHTPPRAAPLKPPPSPPQ
SASASRSPSPPRRRPSWNASPAPDAYDEKHVPQPLYRGRNRVKQLSVSPA
PRSLHRRRDSRRSIASWSQSSESLRSRSPSPDRYRSRSRRYRNSRSERES
RSPSPRYKRSPSPYRWRRRRKSYDSSPSPERYRPSRYRRSKYLQSPSSPS
VDHRYYRDQARSPSRSVSRSPRRFRSRSPLPMKSRATMRSRSPSPLRERG
YENEDVYGRGRWTERPPYPRSGRDKYDRPSESARDYKRKEYGERENGTSR
KRGGYASPPDEHVPKRRRTSYWDER*

mRNA from alignment at tig00000017_pilon:366236..367963+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil844.t1 ID=Gchil844.t1|Name=Gchil844.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at tig00000017_pilon:366236..367963+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACAACGGCATCGGTCTCACCTCCACGCGCGGCACGGGCACCAGCGG
CCACGTACAGCGCAACGTTGCCGCGCTCCGTCCGCAGCCCATGCGCTCTG
CGCGTCACACGCGCAAGGCGCCGTCGCAGCCGCGCCCGCTACCGCCCGCG
CTGGCCGAGCACGAACGCCGCCGCGCCGTCGAGGTTGCCGTCGCCGAATT
ACACGACGAGCTTGTTGCGCGTCGCTATGACGAACACACCATCCGCTTCA
TGGAGAAGCGCCTGAGACAGGATCTGTTGTCGCGTGACTCCCACGAGCGC
GCCGCCCCTGCGCCGCCCGCCGCTGGCGCGTCGCTCTCGCACTTGGTGCG
CCACAGGAATGACGCCCTGCGCGCTGCGCTCAATGTGAGCGAGCACTACG
TCCCCGGCGATGCTTTCCGCCGCAAGCAGCCCGCACAAACTCCGAAGCCC
TCCGTCGAAAGCACACCCGACCCGCCCGCTGCCGCGCCGCCACAGCGCCC
TCACGCCGCCCCCAACCCCAAGCCTCCCAGCCCGCAGCCGACCCACTCGC
CATCCTCGCCGCTTTCAACCTCACTGACCAACCAACAGCGCCCCAACGCT
GTGCACGTCACCGAGACCAACTCGCGCCCCGCTGCCCACCAAAAGCCTTT
AGAGGTAGCCACCACAGCACACTCCAACCCTCCACCACCAACGCCGACAC
CAAAGGCATCACCGCATAACGCCAAACAACCTAACGCCAAACCGCCAAGC
GCCCCACCCCCTCCACCTCCCACCGCTGAAGAGGTACCTCTTTCCGTGCC
GGCTCCCTCGTCAACCGCCTCATCCCGCACTCAGTCGCGCGCCTCCTCTC
ACACCCCACCGCGCGCAGCGCCACTCAAgccgccgccctccccgccacaa
tccgcgtccgcctcgcgctctccgtctccgcctcgccgccgccCATCCTG
GAACGCGTCGCCCGCACCAGATGCATACGATGAAAAGCATGTGCCACAGC
CTCTCTACCGAGGTCGAAACAGAGTCAAGCAGCTATCCGTCTCCCCTGCA
CCGCGCTCGTTGCATCGCCGTCGCGATTCGCGCCGAAGCATAGCGTCTTG
GAGCCAGTCTAGCGAGTCTTTACGTTCGCGTTCCCCTTCCCCGGATCGCT
ACCGCTCTCGTTCCAGGCGATACCGGAACTCTCGCTCTGAACGAGAGTCG
AGATCACCATCTCCGCGCTACAAACGCTCTCCCTCTCCATACAGGTGGCG
GCGGCGCCGAAAATCGTACGACTCATCTCCAAGCCCCGAGCGCTACCGTC
CATCTCGATATCGCCGCTCAAAATATCTACAGTCGCCATCCAGTCCATCT
GTTGACCACAGATATTACAGGGACCAGGCGCGCTCCCCATCACGTTCAGT
GtcgcgctctcctcgtcgctttcgctctcgttcccctctTCCGATGAAAT
CACGAGCTACGATGCGTTCGAGGTCACCCTCCCCGCTTCGAGAGCGTGGG
TACGAAAACGAGGATGTGTATGGTCGAGGACGATGGACAGAACGTCCCCC
GTACCCAAGAAGCGGCCGTGACAAATACGATCGGCCAAGCGAGTCTGCAC
GCGACTACAAGCGTAAGGAATACGGCGAGCGCGAAAACGGGACTAGTCGG
AAGAGAGGTGGATACGCCTCCCCGCCAGACGAACACGTTCCGAAACGTCG
TCGTACCTCATACTGGGACGAACGCTAG

Coding sequence (CDS) from alignment at tig00000017_pilon:366236..367963+

>Gchil844.t1 ID=Gchil844.t1|Name=Gchil844.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1728bp|location=Sequence derived from alignment at tig00000017_pilon:366236..367963+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACAACGGCATCGGTCTCACCTCCACGCGCGGCACGGGCACCAGCGG
CCACGTACAGCGCAACGTTGCCGCGCTCCGTCCGCAGCCCATGCGCTCTG
CGCGTCACACGCGCAAGGCGCCGTCGCAGCCGCGCCCGCTACCGCCCGCG
CTGGCCGAGCACGAACGCCGCCGCGCCGTCGAGGTTGCCGTCGCCGAATT
ACACGACGAGCTTGTTGCGCGTCGCTATGACGAACACACCATCCGCTTCA
TGGAGAAGCGCCTGAGACAGGATCTGTTGTCGCGTGACTCCCACGAGCGC
GCCGCCCCTGCGCCGCCCGCCGCTGGCGCGTCGCTCTCGCACTTGGTGCG
CCACAGGAATGACGCCCTGCGCGCTGCGCTCAATGTGAGCGAGCACTACG
TCCCCGGCGATGCTTTCCGCCGCAAGCAGCCCGCACAAACTCCGAAGCCC
TCCGTCGAAAGCACACCCGACCCGCCCGCTGCCGCGCCGCCACAGCGCCC
TCACGCCGCCCCCAACCCCAAGCCTCCCAGCCCGCAGCCGACCCACTCGC
CATCCTCGCCGCTTTCAACCTCACTGACCAACCAACAGCGCCCCAACGCT
GTGCACGTCACCGAGACCAACTCGCGCCCCGCTGCCCACCAAAAGCCTTT
AGAGGTAGCCACCACAGCACACTCCAACCCTCCACCACCAACGCCGACAC
CAAAGGCATCACCGCATAACGCCAAACAACCTAACGCCAAACCGCCAAGC
GCCCCACCCCCTCCACCTCCCACCGCTGAAGAGGTACCTCTTTCCGTGCC
GGCTCCCTCGTCAACCGCCTCATCCCGCACTCAGTCGCGCGCCTCCTCTC
ACACCCCACCGCGCGCAGCGCCACTCAAgccgccgccctccccgccacaa
tccgcgtccgcctcgcgctctccgtctccgcctcgccgccgccCATCCTG
GAACGCGTCGCCCGCACCAGATGCATACGATGAAAAGCATGTGCCACAGC
CTCTCTACCGAGGTCGAAACAGAGTCAAGCAGCTATCCGTCTCCCCTGCA
CCGCGCTCGTTGCATCGCCGTCGCGATTCGCGCCGAAGCATAGCGTCTTG
GAGCCAGTCTAGCGAGTCTTTACGTTCGCGTTCCCCTTCCCCGGATCGCT
ACCGCTCTCGTTCCAGGCGATACCGGAACTCTCGCTCTGAACGAGAGTCG
AGATCACCATCTCCGCGCTACAAACGCTCTCCCTCTCCATACAGGTGGCG
GCGGCGCCGAAAATCGTACGACTCATCTCCAAGCCCCGAGCGCTACCGTC
CATCTCGATATCGCCGCTCAAAATATCTACAGTCGCCATCCAGTCCATCT
GTTGACCACAGATATTACAGGGACCAGGCGCGCTCCCCATCACGTTCAGT
GtcgcgctctcctcgtcgctttcgctctcgttcccctctTCCGATGAAAT
CACGAGCTACGATGCGTTCGAGGTCACCCTCCCCGCTTCGAGAGCGTGGG
TACGAAAACGAGGATGTGTATGGTCGAGGACGATGGACAGAACGTCCCCC
GTACCCAAGAAGCGGCCGTGACAAATACGATCGGCCAAGCGAGTCTGCAC
GCGACTACAAGCGTAAGGAATACGGCGAGCGCGAAAACGGGACTAGTCGG
AAGAGAGGTGGATACGCCTCCCCGCCAGACGAACACGTTCCGAAACGTCG
TCGTACCTCATACTGGGACGAACGCTAG