Gchil843.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil843.t1
Unique NameGchil843.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:364512..365552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10160.XP_004631270.1
Preferred nameCARKD
PFAMsCarb_kinase,Myb_DNA-bind_4
Max annot lvl33208|Metazoa
KEGG koko:K17757
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005783,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009165,GO:0009435,GO:0009987,GO:0012505,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0031974,GO:0034356,GO:0034641,GO:0034654,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046496,GO:0047453,GO:0051186,GO:0051188,GO:0055086,GO:0070013,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.14e-49
EggNOG OGsCOG0063@1|root,KOG3974@2759|Eukaryota,38FU3@33154|Opisthokonta,3BEXY@33208|Metazoa,3CRJF@33213|Bilateria,480FF@7711|Chordata,48ZX4@7742|Vertebrata,3JF63@40674|Mammalia,35M2Y@314146|Euarchontoglires,4PU31@9989|Rodentia
EC4.2.1.93
DescriptionCatalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
COG categoryG
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil843Gchil843Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 364512..365552 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil843.t1.stop1Gchil843.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 364512..364514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil843.t1.CDS1Gchil843.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 364512..365552 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil843.t1.exon1Gchil843.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 364512..365552 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil843.t1.start1Gchil843.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 365550..365552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil843.t1Gchil843.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 364512..365552 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil843.t1 ID=Gchil843.t1|Name=Gchil843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=347bp
MRAACASPFVPRVGCRVPAARRRGRSVANVASIAHRVGMSAMTNAQYLST
FGACVPRLDDTSHKGQAGRVAVVGGSIAYTGAPFFSAMAAMRGGADLAFV
FCPPDAAPIIKAYSPDLIVYPGFGHIGPQCDAFDRMHALVVGPGLGRDRA
ASLVFEQVLTYAIRSGSVLVVDADALWILHTRLDLLKLISAAESTFALFL
TPNKMELQRLLQTADVDHPDQLVEFLNGNVIIVAKGQHDLVLSKSFRTTV
DSQSSLKRVGGLGDILSGLLAVYAFWMLRDVERTSLSPLQLHHRCVAAAV
AACSITRLATHNAFLQHRHGFVASDALSFINHALDTVVGSEPDRQQ*
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spliced messenger RNA

>Gchil843.t1 ID=Gchil843.t1|Name=Gchil843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000017_pilon:364512..365552- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCGCTTGCGCCTCGCCGTTCGTCCCGCGCGTTGGCTGTCGCGT
GCCAGCAGCGCGCCGTCGTGGCCGCAGCGTTGCGAACGTCGCGAGTATCG
CGCACCGCGTAGGCATGAGCGCTATGACCAATGCGCAGTATTTGTCGACC
TTCGGTGCGTGTGTGCCTCGTCTGGACGACACTTCGCACAAGGGACAGGC
GGGAAGAGTTGCCGTTGTTGGCGGTAGCATTGCCTACACGGGTGCCCCGT
TCTTCTCGGCCATGGCGGCAATGAGGGGCGGTGCTGACCTGGCCTTTGTC
TTCTGTCCGCCTGACGCCGCGCCCATCATAAAGGCTTATTCGCCGGACCT
CATCGTGTACCCGGGTTTTGGGCACATTGGTCCTCAGTGTGACGCCTTTG
ACAGAATGCATGCCTTGGTTGTTGGTCCGGGGTTGGGACGTGACCGTGCC
GCCTCCCTCGTCTTTGAACAGGTGCTTACGTACGCCATTCGCAGTGGAAG
CGTGCTTGTTGTCGATGCCGACGCGCTCTGGATCTTGCACACGCGCCTCG
ATTTGCTCAAGCTCATCTCAGCCGCCGAGTCTACTTTCGCTTTATTTCTC
ACCCCAAACAAGATGGAGTTGCAGCGCTTGCTGCAAACCGCCGACGTTGA
CCACCCCGATCAGTTGGTTGAATTTTTGAACGGCAATGTCATCATTGTTG
CAAAGGGGCAGCATGACCTTGTACTGTCCAAGAGCTTTCGAACCACAGTT
GATTCACAGTCTTCGCTGAAACGCGTCGGTGGACTGGGCGATATTTTATC
CGGCCTTCTGGCTGTGTATGCCTTTTGGATGCTGCGTGATGTCGAACGCA
CCTCACTTTCGCCGCTTCAATTGCATCACAGATGCGTCGCAGCTGCTGTC
GCGGCCTGTTCCATCACCCGACTAGCCACCCACAACGCCTTTCTTCAACA
TCGCCACGGCTTCGTCGCGTCAGACGCCTTGTCATTCATCAATCATGCCT
TAGACACTGTCGTCGGCTCTGAACCTGACCGCCAACAATGA
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protein sequence of Gchil843.t1

>Gchil843.t1 ID=Gchil843.t1|Name=Gchil843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=347bp
MRAACASPFVPRVGCRVPAARRRGRSVANVASIAHRVGMSAMTNAQYLST
FGACVPRLDDTSHKGQAGRVAVVGGSIAYTGAPFFSAMAAMRGGADLAFV
FCPPDAAPIIKAYSPDLIVYPGFGHIGPQCDAFDRMHALVVGPGLGRDRA
ASLVFEQVLTYAIRSGSVLVVDADALWILHTRLDLLKLISAAESTFALFL
TPNKMELQRLLQTADVDHPDQLVEFLNGNVIIVAKGQHDLVLSKSFRTTV
DSQSSLKRVGGLGDILSGLLAVYAFWMLRDVERTSLSPLQLHHRCVAAAV
AACSITRLATHNAFLQHRHGFVASDALSFINHALDTVVGSEPDRQQ*
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mRNA from alignment at tig00000017_pilon:364512..365552-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil843.t1 ID=Gchil843.t1|Name=Gchil843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000017_pilon:364512..365552- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGCCGCTTGCGCCTCGCCGTTCGTCCCGCGCGTTGGCTGTCGCGT
GCCAGCAGCGCGCCGTCGTGGCCGCAGCGTTGCGAACGTCGCGAGTATCG
CGCACCGCGTAGGCATGAGCGCTATGACCAATGCGCAGTATTTGTCGACC
TTCGGTGCGTGTGTGCCTCGTCTGGACGACACTTCGCACAAGGGACAGGC
GGGAAGAGTTGCCGTTGTTGGCGGTAGCATTGCCTACACGGGTGCCCCGT
TCTTCTCGGCCATGGCGGCAATGAGGGGCGGTGCTGACCTGGCCTTTGTC
TTCTGTCCGCCTGACGCCGCGCCCATCATAAAGGCTTATTCGCCGGACCT
CATCGTGTACCCGGGTTTTGGGCACATTGGTCCTCAGTGTGACGCCTTTG
ACAGAATGCATGCCTTGGTTGTTGGTCCGGGGTTGGGACGTGACCGTGCC
GCCTCCCTCGTCTTTGAACAGGTGCTTACGTACGCCATTCGCAGTGGAAG
CGTGCTTGTTGTCGATGCCGACGCGCTCTGGATCTTGCACACGCGCCTCG
ATTTGCTCAAGCTCATCTCAGCCGCCGAGTCTACTTTCGCTTTATTTCTC
ACCCCAAACAAGATGGAGTTGCAGCGCTTGCTGCAAACCGCCGACGTTGA
CCACCCCGATCAGTTGGTTGAATTTTTGAACGGCAATGTCATCATTGTTG
CAAAGGGGCAGCATGACCTTGTACTGTCCAAGAGCTTTCGAACCACAGTT
GATTCACAGTCTTCGCTGAAACGCGTCGGTGGACTGGGCGATATTTTATC
CGGCCTTCTGGCTGTGTATGCCTTTTGGATGCTGCGTGATGTCGAACGCA
CCTCACTTTCGCCGCTTCAATTGCATCACAGATGCGTCGCAGCTGCTGTC
GCGGCCTGTTCCATCACCCGACTAGCCACCCACAACGCCTTTCTTCAACA
TCGCCACGGCTTCGTCGCGTCAGACGCCTTGTCATTCATCAATCATGCCT
TAGACACTGTCGTCGGCTCTGAACCTGACCGCCAACAATGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:364512..365552-

>Gchil843.t1 ID=Gchil843.t1|Name=Gchil843.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000017_pilon:364512..365552- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGCCGCTTGCGCCTCGCCGTTCGTCCCGCGCGTTGGCTGTCGCGT
GCCAGCAGCGCGCCGTCGTGGCCGCAGCGTTGCGAACGTCGCGAGTATCG
CGCACCGCGTAGGCATGAGCGCTATGACCAATGCGCAGTATTTGTCGACC
TTCGGTGCGTGTGTGCCTCGTCTGGACGACACTTCGCACAAGGGACAGGC
GGGAAGAGTTGCCGTTGTTGGCGGTAGCATTGCCTACACGGGTGCCCCGT
TCTTCTCGGCCATGGCGGCAATGAGGGGCGGTGCTGACCTGGCCTTTGTC
TTCTGTCCGCCTGACGCCGCGCCCATCATAAAGGCTTATTCGCCGGACCT
CATCGTGTACCCGGGTTTTGGGCACATTGGTCCTCAGTGTGACGCCTTTG
ACAGAATGCATGCCTTGGTTGTTGGTCCGGGGTTGGGACGTGACCGTGCC
GCCTCCCTCGTCTTTGAACAGGTGCTTACGTACGCCATTCGCAGTGGAAG
CGTGCTTGTTGTCGATGCCGACGCGCTCTGGATCTTGCACACGCGCCTCG
ATTTGCTCAAGCTCATCTCAGCCGCCGAGTCTACTTTCGCTTTATTTCTC
ACCCCAAACAAGATGGAGTTGCAGCGCTTGCTGCAAACCGCCGACGTTGA
CCACCCCGATCAGTTGGTTGAATTTTTGAACGGCAATGTCATCATTGTTG
CAAAGGGGCAGCATGACCTTGTACTGTCCAAGAGCTTTCGAACCACAGTT
GATTCACAGTCTTCGCTGAAACGCGTCGGTGGACTGGGCGATATTTTATC
CGGCCTTCTGGCTGTGTATGCCTTTTGGATGCTGCGTGATGTCGAACGCA
CCTCACTTTCGCCGCTTCAATTGCATCACAGATGCGTCGCAGCTGCTGTC
GCGGCCTGTTCCATCACCCGACTAGCCACCCACAACGCCTTTCTTCAACA
TCGCCACGGCTTCGTCGCGTCAGACGCCTTGTCATTCATCAATCATGCCT
TAGACACTGTCGTCGGCTCTGAACCTGACCGCCAACAATGA
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