Gchil842.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil842.t1
Unique NameGchil842.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length156
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:363076..363543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog50452.A0A087G9T6
PFAMsDUF393
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0008150,GO:0008152,GO:0009611,GO:0009888,GO:0015035,GO:0015036,GO:0016491,GO:0016667,GO:0031099,GO:0032502,GO:0040007,GO:0042060,GO:0042246,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048589,GO:0048856,GO:0050896,GO:0055114
Evalue1.24e-42
EggNOG OGsCOG3011@1|root,2RXZ4@2759|Eukaryota,37TSW@33090|Viridiplantae,3G9NM@35493|Streptophyta,3HU1I@3699|Brassicales
DescriptionProtein of unknown function, DUF393
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil842Gchil842Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 363076..363543 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil842.t1.stop1Gchil842.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 363076..363078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil842.t1.CDS1Gchil842.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 363076..363543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil842.t1.exon1Gchil842.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 363076..363543 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil842.t1.start1Gchil842.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 363541..363543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil842.t1Gchil842.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 363076..363543 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil842.t1 ID=Gchil842.t1|Name=Gchil842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=156bp
MTSTQSTHKTNNVIDASTKQSNAELRLLYDGECSLCMKEVKFLRKRSEQR
GNTIDFVDISSADYAADENKGICYEQAMGSIHGITKDGQVVTGVPVFRHA
YGAVGLGWVYAITQVPGIGWAVDKAYEFWASKRLAMTGRPPLEEVVRMRE
KKTCR*
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spliced messenger RNA

>Gchil842.t1 ID=Gchil842.t1|Name=Gchil842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000017_pilon:363076..363543- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCAACTCAATCGACACACAAAACAAACAATGTGATTGACGCGTC
CACGAAGCAAAGCAACGCAGAGCTGAGGCTTCTTTACGATGGGGAGTGCA
GTCTGTGTATGAAGGAAGTGAAATTCCTTCGAAAACGATCCGAACAACGT
GGCAACACAATCGACTTTGTTGACATCTCATCGGCAGATTATGCAGCCGA
TGAGAATAAAGGGATCTGTTACGAACAGGCAATGGGAAGTATCCATGGCA
TCACCAAAGACGGGCAAGTGGTTACGGGCGTTCCCGTGTTTCGACATGCG
TATGGAGCAGTGGGGCTCGGATGGGTGTACGCCATCACACAGGTGCCAGG
CATTGGATGGGCTGTGGACAAGGCTTACGAGTTTTGGGCCAGCAAGCGGC
TGGCAATGACGGGAAGACCGCCATTAGAGGAGGTGGTTCGGATGCGTGAG
AAAAAGACGTGCAGGTAG
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protein sequence of Gchil842.t1

>Gchil842.t1 ID=Gchil842.t1|Name=Gchil842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=156bp
MTSTQSTHKTNNVIDASTKQSNAELRLLYDGECSLCMKEVKFLRKRSEQR
GNTIDFVDISSADYAADENKGICYEQAMGSIHGITKDGQVVTGVPVFRHA
YGAVGLGWVYAITQVPGIGWAVDKAYEFWASKRLAMTGRPPLEEVVRMRE
KKTCR*
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mRNA from alignment at tig00000017_pilon:363076..363543-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil842.t1 ID=Gchil842.t1|Name=Gchil842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=468bp|location=Sequence derived from alignment at tig00000017_pilon:363076..363543- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCAACTCAATCGACACACAAAACAAACAATGTGATTGACGCGTC
CACGAAGCAAAGCAACGCAGAGCTGAGGCTTCTTTACGATGGGGAGTGCA
GTCTGTGTATGAAGGAAGTGAAATTCCTTCGAAAACGATCCGAACAACGT
GGCAACACAATCGACTTTGTTGACATCTCATCGGCAGATTATGCAGCCGA
TGAGAATAAAGGGATCTGTTACGAACAGGCAATGGGAAGTATCCATGGCA
TCACCAAAGACGGGCAAGTGGTTACGGGCGTTCCCGTGTTTCGACATGCG
TATGGAGCAGTGGGGCTCGGATGGGTGTACGCCATCACACAGGTGCCAGG
CATTGGATGGGCTGTGGACAAGGCTTACGAGTTTTGGGCCAGCAAGCGGC
TGGCAATGACGGGAAGACCGCCATTAGAGGAGGTGGTTCGGATGCGTGAG
AAAAAGACGTGCAGGTAG
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Coding sequence (CDS) from alignment at tig00000017_pilon:363076..363543-

>Gchil842.t1 ID=Gchil842.t1|Name=Gchil842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=468bp|location=Sequence derived from alignment at tig00000017_pilon:363076..363543- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCAACTCAATCGACACACAAAACAAACAATGTGATTGACGCGTC
CACGAAGCAAAGCAACGCAGAGCTGAGGCTTCTTTACGATGGGGAGTGCA
GTCTGTGTATGAAGGAAGTGAAATTCCTTCGAAAACGATCCGAACAACGT
GGCAACACAATCGACTTTGTTGACATCTCATCGGCAGATTATGCAGCCGA
TGAGAATAAAGGGATCTGTTACGAACAGGCAATGGGAAGTATCCATGGCA
TCACCAAAGACGGGCAAGTGGTTACGGGCGTTCCCGTGTTTCGACATGCG
TATGGAGCAGTGGGGCTCGGATGGGTGTACGCCATCACACAGGTGCCAGG
CATTGGATGGGCTGTGGACAAGGCTTACGAGTTTTGGGCCAGCAAGCGGC
TGGCAATGACGGGAAGACCGCCATTAGAGGAGGTGGTTCGGATGCGTGAG
AAAAAGACGTGCAGGTAG
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