Gchil836.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil836.t1
Unique NameGchil836.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length330
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:266278..267267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926554.KI912638_gene4886
PFAMsFasciclin
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K19519
Evalue1.02e-07
EggNOG OGsCOG2335@1|root,COG2335@2|Bacteria,1WMNY@1297|Deinococcus-Thermus
DescriptionCOG2335 Secreted and surface protein containing fasciclin-like repeats
COG categoryM
BRITEko00000,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil836Gchil836Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 266278..267267 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil836.t1.stop1Gchil836.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 266278..266280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil836.t1.CDS1Gchil836.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 266278..267267 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil836.t1.exon1Gchil836.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 266278..267267 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil836.t1.start1Gchil836.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 267265..267267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil836.t1Gchil836.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 266278..267267 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil836.t1 ID=Gchil836.t1|Name=Gchil836.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=330bp
MSATTMAFATPQALPRGPASVAATASAAATTPLWPAGPRPSTTRAAKAVR
SPLRMVQKNAPIVNTDLTITTLLSSAKIFSTLLRVIATSGIAPDSISGTV
FAPTNAAFAKLPAELLQTLQRDALAARQLVLRHVVLDTVPVAKLNGNGFL
NAAFDGLLPYSSYGGKQLKIDGVSVTSLVDQTFQKGMVHAICSVLKPPSQ
KWPSFEQTYIAPPAAALKRSQAAVRRAQGAAIPATLGGRKAMGLLEQKPF
WMYGPPYNAAKQEEYEPISVAVPDVSSVDYQLMPPGSVVVVPDSVNALEL
NPVSGMSKYIGQTKRITGQDALSDYSKLD*
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spliced messenger RNA

>Gchil836.t1 ID=Gchil836.t1|Name=Gchil836.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000017_pilon:266278..267267- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCACCACGATGGCGTTCGCGACCCCCCAAGCGCTCCCCCGCGG
CCCTGCGTCCGTCGCCGCGACCGCCTCCGCGGCCGCCACCACGCCGCTAT
GGCCCGCCGGGCCGCGGCCGTCCACCACTCGCGCCGCGAAAGCGGTACGC
TCGCCGTTGCGCATGGTGCAGAAGAACGCTCCCATCGTCAACACCGATCT
CACCATAACGACGCTGCTGTCATCAGCCAAAATATTTTCCACGTTGCTCC
GCGTCATAGCGACGAGCGGCATAGCGCCTGATTCCATTTCCGGTACCGTA
TTCGCGCCAACCAACGCAGCCTTCGCCAAGCTCCCGGCCGAACTGCTACA
AACGTTGCAGCGCGACGCGCTCGCCGCACGCCAACTCGTTCTTCGCCACG
TGGTGCTGGACACGGTTCCCGTCGCCAAGCTCAACGGCAACGGGTTTCTG
AACGCGGCGTTCGACGGTCTGCTGCCGTACAGCTCGTATGGCGGCAAGCA
ACTCAAGATTGACGGCGTGTCCGTCACGTCTCTTGTGGACCAGACGTTTC
AAAAGGGCATGGTGCACGCCATTTGCAGCGTGCTCAAGCCGCCGAGCCAA
AAGTGGCCGTCCTTTGAGCAGACGTACATCGCGCCGCCCGCTGCCGCGCT
CAAGAGGAGCCAGGCTGCCGTCAGGCGCGCGCAGGGCGCTGCAATTCCCG
CCACGCTGGGCGGCAGAAAGGCCATGGGCCTCCTCGAGCAGAAGCCGTTT
TGGATGTACGGTCCGCCGTACAACGCCGCAAAGCAGGAGGAGTATGAGCC
TATCTCAGTGGCTGTACCAGACGTATCCTCCGTAGACTACCAGCTCATGC
CGCCGGGCTCTGTCGTAGTGGTGCCGGATTCTGTCAACGCCTTGGAGTTG
AATCCCGTCAGCGGCATGAGCAAGTACATTGGGCAGACCAAACGTATTAC
TGGCCAAGATGCTCTCTCGGATTACTCCAAATTAGACTGA
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protein sequence of Gchil836.t1

>Gchil836.t1 ID=Gchil836.t1|Name=Gchil836.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=330bp
MSATTMAFATPQALPRGPASVAATASAAATTPLWPAGPRPSTTRAAKAVR
SPLRMVQKNAPIVNTDLTITTLLSSAKIFSTLLRVIATSGIAPDSISGTV
FAPTNAAFAKLPAELLQTLQRDALAARQLVLRHVVLDTVPVAKLNGNGFL
NAAFDGLLPYSSYGGKQLKIDGVSVTSLVDQTFQKGMVHAICSVLKPPSQ
KWPSFEQTYIAPPAAALKRSQAAVRRAQGAAIPATLGGRKAMGLLEQKPF
WMYGPPYNAAKQEEYEPISVAVPDVSSVDYQLMPPGSVVVVPDSVNALEL
NPVSGMSKYIGQTKRITGQDALSDYSKLD*
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mRNA from alignment at tig00000017_pilon:266278..267267-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil836.t1 ID=Gchil836.t1|Name=Gchil836.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=990bp|location=Sequence derived from alignment at tig00000017_pilon:266278..267267- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCCACCACGATGGCGTTCGCGACCCCCCAAGCGCTCCCCCGCGG
CCCTGCGTCCGTCGCCGCGACCGCCTCCGCGGCCGCCACCACGCCGCTAT
GGCCCGCCGGGCCGCGGCCGTCCACCACTCGCGCCGCGAAAGCGGTACGC
TCGCCGTTGCGCATGGTGCAGAAGAACGCTCCCATCGTCAACACCGATCT
CACCATAACGACGCTGCTGTCATCAGCCAAAATATTTTCCACGTTGCTCC
GCGTCATAGCGACGAGCGGCATAGCGCCTGATTCCATTTCCGGTACCGTA
TTCGCGCCAACCAACGCAGCCTTCGCCAAGCTCCCGGCCGAACTGCTACA
AACGTTGCAGCGCGACGCGCTCGCCGCACGCCAACTCGTTCTTCGCCACG
TGGTGCTGGACACGGTTCCCGTCGCCAAGCTCAACGGCAACGGGTTTCTG
AACGCGGCGTTCGACGGTCTGCTGCCGTACAGCTCGTATGGCGGCAAGCA
ACTCAAGATTGACGGCGTGTCCGTCACGTCTCTTGTGGACCAGACGTTTC
AAAAGGGCATGGTGCACGCCATTTGCAGCGTGCTCAAGCCGCCGAGCCAA
AAGTGGCCGTCCTTTGAGCAGACGTACATCGCGCCGCCCGCTGCCGCGCT
CAAGAGGAGCCAGGCTGCCGTCAGGCGCGCGCAGGGCGCTGCAATTCCCG
CCACGCTGGGCGGCAGAAAGGCCATGGGCCTCCTCGAGCAGAAGCCGTTT
TGGATGTACGGTCCGCCGTACAACGCCGCAAAGCAGGAGGAGTATGAGCC
TATCTCAGTGGCTGTACCAGACGTATCCTCCGTAGACTACCAGCTCATGC
CGCCGGGCTCTGTCGTAGTGGTGCCGGATTCTGTCAACGCCTTGGAGTTG
AATCCCGTCAGCGGCATGAGCAAGTACATTGGGCAGACCAAACGTATTAC
TGGCCAAGATGCTCTCTCGGATTACTCCAAATTAGACTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:266278..267267-

>Gchil836.t1 ID=Gchil836.t1|Name=Gchil836.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=990bp|location=Sequence derived from alignment at tig00000017_pilon:266278..267267- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCCACCACGATGGCGTTCGCGACCCCCCAAGCGCTCCCCCGCGG
CCCTGCGTCCGTCGCCGCGACCGCCTCCGCGGCCGCCACCACGCCGCTAT
GGCCCGCCGGGCCGCGGCCGTCCACCACTCGCGCCGCGAAAGCGGTACGC
TCGCCGTTGCGCATGGTGCAGAAGAACGCTCCCATCGTCAACACCGATCT
CACCATAACGACGCTGCTGTCATCAGCCAAAATATTTTCCACGTTGCTCC
GCGTCATAGCGACGAGCGGCATAGCGCCTGATTCCATTTCCGGTACCGTA
TTCGCGCCAACCAACGCAGCCTTCGCCAAGCTCCCGGCCGAACTGCTACA
AACGTTGCAGCGCGACGCGCTCGCCGCACGCCAACTCGTTCTTCGCCACG
TGGTGCTGGACACGGTTCCCGTCGCCAAGCTCAACGGCAACGGGTTTCTG
AACGCGGCGTTCGACGGTCTGCTGCCGTACAGCTCGTATGGCGGCAAGCA
ACTCAAGATTGACGGCGTGTCCGTCACGTCTCTTGTGGACCAGACGTTTC
AAAAGGGCATGGTGCACGCCATTTGCAGCGTGCTCAAGCCGCCGAGCCAA
AAGTGGCCGTCCTTTGAGCAGACGTACATCGCGCCGCCCGCTGCCGCGCT
CAAGAGGAGCCAGGCTGCCGTCAGGCGCGCGCAGGGCGCTGCAATTCCCG
CCACGCTGGGCGGCAGAAAGGCCATGGGCCTCCTCGAGCAGAAGCCGTTT
TGGATGTACGGTCCGCCGTACAACGCCGCAAAGCAGGAGGAGTATGAGCC
TATCTCAGTGGCTGTACCAGACGTATCCTCCGTAGACTACCAGCTCATGC
CGCCGGGCTCTGTCGTAGTGGTGCCGGATTCTGTCAACGCCTTGGAGTTG
AATCCCGTCAGCGGCATGAGCAAGTACATTGGGCAGACCAAACGTATTAC
TGGCCAAGATGCTCTCTCGGATTACTCCAAATTAGACTGA
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