Gchil834.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil834.t1
Unique NameGchil834.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:262211..263704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704411.1
Preferred namePUS10
Max annot lvl2759|Eukaryota
KEGG koko:K07583
GOsGO:0001522,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue2.56e-46
EggNOG OGsCOG1258@1|root,KOG2364@2759|Eukaryota
EC5.4.99.25
Descriptionpseudouridine synthase activity
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil834Gchil834Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 262211..263704 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil834.t1.stop1Gchil834.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 262211..262213 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil834.t1.CDS1Gchil834.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 262211..263704 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil834.t1.exon1Gchil834.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 262211..263704 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil834.t1.start1Gchil834.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 263702..263704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil834.t1Gchil834.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 262211..263704 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil834.t1 ID=Gchil834.t1|Name=Gchil834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp
MGGGGDGDGDGDVDGDGDSLCPCCALRARNVREPARYAAAATTDADADAD
ADAEGSSGGACGACLGVLQRGALHAAAQAAHKQLRGVRHAGTYRVAAALP
LSAALLRERALCLRRAAARPTSLRDALLCALRPLLAPLRYDAAAELELAL
TYEHAACARDARFLRLDAASRAAAAAAAAYKRPRRRRDEVLTPSSPPLSV
GAASRALQALSDEQFATAAPPRVLSLAREREAVAVSVRVLTDPILLAARY
VKLSRALSQTPWHVASPRATESVQAVVERAVRAELPFQSATFTAGGREDV
DVRMLHHGRPFVLQLRGAHVVPSLVNADALRRVQHALKHSVRLCELRVAP
REYAAEMRAFETSKRKHYRCVVYVARALDHNAFNALRMRHVSLLQRTPLR
VLHRRSHAVRTRVVYHCCVARVLNDHFVVLDVVTQAGTYVKEFVHGDHGR
TRPSVAERLRCFADIVQLDVTHISHAGADAHDHAVGQHAAHVNSNSD*
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spliced messenger RNA

>Gchil834.t1 ID=Gchil834.t1|Name=Gchil834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000017_pilon:262211..263704- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGTGGCGGTGACGGTGACGGCGACGGCGACGTCGACGGCGACGG
CGATTCGCTGTGCCCGTGCTGTGCGCTGCGCGCGCGCAACGTGCGCGAGC
CCGCGCGCTACGCCGCCGCGGCCACGACCGACGCCGACGCCGACGCCGAC
GCCGACGCCGAAGGAAGCAGCGGCGGCGCATGCGGCGCGTGCCTCGGCGT
GCTGCAGCGCGGCGCGCTGCACGCCGCGGCGCAAGCCGCACACAAGCAGC
TGCGCGGCGTACGGCACGCCGGAACGTACCGCGTGGCGGCCGCGCTGCCG
CTGTCGGCCGCGCTGCTACGCGAGCGCGCGCTGTGTCTACGCCGCGCAGC
GGCGCGTCCCACGTCGCTCCGCGACGCGCTCTTGTGCGCGCTACGCCCGT
TGTTGGCGCCGCTGCGCTACGACGCCGCCGCCGAGCTCGAGCTCGCCCTC
ACGTACGAGCACGCCGCGTGTGCGCGCGACGCCCGCTTTCTGCGTCTCGA
CGCCGCCTCGCGCGCCGCCGCCGCCGCCGCCGCCGCGTACAAGCGTCCGC
GACGTCGTCGAGATGAGGTGTTGACGCCTTCATCGCCGCCGCTGTCCGTG
GGCGCCGCGTCGCGCGCGCTGCAGGCGCTGTCCGACGAGCAGTTTGCGAC
TGCCGCGCCGCCGCGCGTGCTGTCGCTGGCGCGCGAGCGCGAAGCAGTTG
CCGTCAGCGTGCGCGTGCTCACTGACCCCATTCTACTTGCCGCGCGCTAC
GTCAAGCTGTCGCGCGCGCTGTCGCAGACTCCTTGGCACGTGGCGTCGCC
CCGCGCCACCGAGAGCGTACAAGCCGTCGTGGAACGCGCCGTGCGCGCGG
AGCTACCGTTTCAAAGTGCCACCTTCACCGCCGGCGGTCGCGAGGACGTT
GATGTACGCATGTTGCATCACGGTCGTCCCTTCGTGCTGCAGTTGCGCGG
CGCTCACGTTGTGCCGTCGCTCGTGAATGCTGACGCTTTGCGTCGCGTGC
AGCACGCTTTGAAACACTCGGTTCGACTTTGTGAGCTGCGAGTCGCACCG
AGGGAGTATGCCGCCGAAATGCGCGCCTTCGAGACCAGTAAGCGCAAGCA
CTACCGCTGCGTCGTTTATGTGGCGCGTGCGTTGGATCACAACGCCTTCA
ACGCCCTTCGTATGCGTCATGTGTCGCTGTTGCAACGCACCCCGCTGCGC
GTCTTGCACCGCCGGTCGCACGCGGTGCGCACCCGCGTCGTGTATCACTG
TTGTGTAGCGCGCGTGTTGAATGATCACTTTGTTGTGCTGGACGTCGTCA
CACAGGCCGGTACTTATGTTAAGGAGTTTGTGCATGGCGACCATGGACGC
ACGCGCCCGAGCGTTGCTGAGCGCCTGCGCTGCTTTGCTGACATTGTGCA
GCTCGACGTCACGCACATCAGCCACGCCGGTGCCGACGCTCATGACCACG
CCGTCGGGCAACACGCCGCCCACGTCAACAGCAATAGCGATTGA
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protein sequence of Gchil834.t1

>Gchil834.t1 ID=Gchil834.t1|Name=Gchil834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=498bp
MGGGGDGDGDGDVDGDGDSLCPCCALRARNVREPARYAAAATTDADADAD
ADAEGSSGGACGACLGVLQRGALHAAAQAAHKQLRGVRHAGTYRVAAALP
LSAALLRERALCLRRAAARPTSLRDALLCALRPLLAPLRYDAAAELELAL
TYEHAACARDARFLRLDAASRAAAAAAAAYKRPRRRRDEVLTPSSPPLSV
GAASRALQALSDEQFATAAPPRVLSLAREREAVAVSVRVLTDPILLAARY
VKLSRALSQTPWHVASPRATESVQAVVERAVRAELPFQSATFTAGGREDV
DVRMLHHGRPFVLQLRGAHVVPSLVNADALRRVQHALKHSVRLCELRVAP
REYAAEMRAFETSKRKHYRCVVYVARALDHNAFNALRMRHVSLLQRTPLR
VLHRRSHAVRTRVVYHCCVARVLNDHFVVLDVVTQAGTYVKEFVHGDHGR
TRPSVAERLRCFADIVQLDVTHISHAGADAHDHAVGQHAAHVNSNSD*
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mRNA from alignment at tig00000017_pilon:262211..263704-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil834.t1 ID=Gchil834.t1|Name=Gchil834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000017_pilon:262211..263704- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGGTGGCGGTGACGGTGACGGCGACGGCGACGTCGACGGCGACGG
CGATTCGCTGTGCCCGTGCTGTGCGCTGCGCGCGCGCAACGTGCGCGAGC
CCGCGCGCTACGCCGCCGCGGCCACGACCGACGCCGACGCCGACGCCGAC
GCCGACGCCGAAGGAAGCAGCGGCGGCGCATGCGGCGCGTGCCTCGGCGT
GCTGCAGCGCGGCGCGCTGCACGCCGCGGCGCAAGCCGCACACAAGCAGC
TGCGCGGCGTACGGCACGCCGGAACGTACCGCGTGGCGGCCGCGCTGCCG
CTGTCGGCCGCGCTGCTACGCGAGCGCGCGCTGTGTCTACGCCGCGCAGC
GGCGCGTCCCACGTCGCTCCGCGACGCGCTCTTGTGCGCGCTACGCCCGT
TGTTGGCGCCGCTGCGCTACGACGCCGCCGCCGAGCTCGAGCTCGCCCTC
ACGTACGAGCACGCCGCGTGTGCGCGCGACGCCCGCTTTCTGCGTCTCGA
CGCCGCCTCGCGCGCCGCCGCCGCCGCCGCCGCCGCGTACAAGCGTCCGC
GACGTCGTCGAGATGAGGTGTTGACGCCTTCATCGCCGCCGCTGTCCGTG
GGCGCCGCGTCGCGCGCGCTGCAGGCGCTGTCCGACGAGCAGTTTGCGAC
TGCCGCGCCGCCGCGCGTGCTGTCGCTGGCGCGCGAGCGCGAAGCAGTTG
CCGTCAGCGTGCGCGTGCTCACTGACCCCATTCTACTTGCCGCGCGCTAC
GTCAAGCTGTCGCGCGCGCTGTCGCAGACTCCTTGGCACGTGGCGTCGCC
CCGCGCCACCGAGAGCGTACAAGCCGTCGTGGAACGCGCCGTGCGCGCGG
AGCTACCGTTTCAAAGTGCCACCTTCACCGCCGGCGGTCGCGAGGACGTT
GATGTACGCATGTTGCATCACGGTCGTCCCTTCGTGCTGCAGTTGCGCGG
CGCTCACGTTGTGCCGTCGCTCGTGAATGCTGACGCTTTGCGTCGCGTGC
AGCACGCTTTGAAACACTCGGTTCGACTTTGTGAGCTGCGAGTCGCACCG
AGGGAGTATGCCGCCGAAATGCGCGCCTTCGAGACCAGTAAGCGCAAGCA
CTACCGCTGCGTCGTTTATGTGGCGCGTGCGTTGGATCACAACGCCTTCA
ACGCCCTTCGTATGCGTCATGTGTCGCTGTTGCAACGCACCCCGCTGCGC
GTCTTGCACCGCCGGTCGCACGCGGTGCGCACCCGCGTCGTGTATCACTG
TTGTGTAGCGCGCGTGTTGAATGATCACTTTGTTGTGCTGGACGTCGTCA
CACAGGCCGGTACTTATGTTAAGGAGTTTGTGCATGGCGACCATGGACGC
ACGCGCCCGAGCGTTGCTGAGCGCCTGCGCTGCTTTGCTGACATTGTGCA
GCTCGACGTCACGCACATCAGCCACGCCGGTGCCGACGCTCATGACCACG
CCGTCGGGCAACACGCCGCCCACGTCAACAGCAATAGCGATTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:262211..263704-

>Gchil834.t1 ID=Gchil834.t1|Name=Gchil834.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000017_pilon:262211..263704- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGGTGGCGGTGACGGTGACGGCGACGGCGACGTCGACGGCGACGG
CGATTCGCTGTGCCCGTGCTGTGCGCTGCGCGCGCGCAACGTGCGCGAGC
CCGCGCGCTACGCCGCCGCGGCCACGACCGACGCCGACGCCGACGCCGAC
GCCGACGCCGAAGGAAGCAGCGGCGGCGCATGCGGCGCGTGCCTCGGCGT
GCTGCAGCGCGGCGCGCTGCACGCCGCGGCGCAAGCCGCACACAAGCAGC
TGCGCGGCGTACGGCACGCCGGAACGTACCGCGTGGCGGCCGCGCTGCCG
CTGTCGGCCGCGCTGCTACGCGAGCGCGCGCTGTGTCTACGCCGCGCAGC
GGCGCGTCCCACGTCGCTCCGCGACGCGCTCTTGTGCGCGCTACGCCCGT
TGTTGGCGCCGCTGCGCTACGACGCCGCCGCCGAGCTCGAGCTCGCCCTC
ACGTACGAGCACGCCGCGTGTGCGCGCGACGCCCGCTTTCTGCGTCTCGA
CGCCGCCTCGCGCGCCGCCGCCGCCGCCGCCGCCGCGTACAAGCGTCCGC
GACGTCGTCGAGATGAGGTGTTGACGCCTTCATCGCCGCCGCTGTCCGTG
GGCGCCGCGTCGCGCGCGCTGCAGGCGCTGTCCGACGAGCAGTTTGCGAC
TGCCGCGCCGCCGCGCGTGCTGTCGCTGGCGCGCGAGCGCGAAGCAGTTG
CCGTCAGCGTGCGCGTGCTCACTGACCCCATTCTACTTGCCGCGCGCTAC
GTCAAGCTGTCGCGCGCGCTGTCGCAGACTCCTTGGCACGTGGCGTCGCC
CCGCGCCACCGAGAGCGTACAAGCCGTCGTGGAACGCGCCGTGCGCGCGG
AGCTACCGTTTCAAAGTGCCACCTTCACCGCCGGCGGTCGCGAGGACGTT
GATGTACGCATGTTGCATCACGGTCGTCCCTTCGTGCTGCAGTTGCGCGG
CGCTCACGTTGTGCCGTCGCTCGTGAATGCTGACGCTTTGCGTCGCGTGC
AGCACGCTTTGAAACACTCGGTTCGACTTTGTGAGCTGCGAGTCGCACCG
AGGGAGTATGCCGCCGAAATGCGCGCCTTCGAGACCAGTAAGCGCAAGCA
CTACCGCTGCGTCGTTTATGTGGCGCGTGCGTTGGATCACAACGCCTTCA
ACGCCCTTCGTATGCGTCATGTGTCGCTGTTGCAACGCACCCCGCTGCGC
GTCTTGCACCGCCGGTCGCACGCGGTGCGCACCCGCGTCGTGTATCACTG
TTGTGTAGCGCGCGTGTTGAATGATCACTTTGTTGTGCTGGACGTCGTCA
CACAGGCCGGTACTTATGTTAAGGAGTTTGTGCATGGCGACCATGGACGC
ACGCGCCCGAGCGTTGCTGAGCGCCTGCGCTGCTTTGCTGACATTGTGCA
GCTCGACGTCACGCACATCAGCCACGCCGGTGCCGACGCTCATGACCACG
CCGTCGGGCAACACGCCGCCCACGTCAACAGCAATAGCGATTGA
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