Gchil8331.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8331.t1
Unique NameGchil8331.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:2071535..2072029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705743.1
Preferred namePRP28
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K12858
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000384,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0005730,GO:0005737,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0070013,GO:0070035,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue2.83e-38
EggNOG OGsCOG0513@1|root,KOG0333@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8331Gchil8331Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 2071535..2072029 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8331.t1.stop1Gchil8331.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 2071535..2071537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8331.t1.CDS1Gchil8331.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 2071535..2072029 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8331.t1.exon1Gchil8331.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 2071535..2072029 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8331.t1.start1Gchil8331.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 2072027..2072029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8331.t1Gchil8331.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 2071535..2072029 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8331.t1 ID=Gchil8331.t1|Name=Gchil8331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=165bp
MSATIASNGLYALVVAPTREHALQIVTEAKKCTYPMRYRVVASIGCKEKD
VQAMSLQAVCDVVVCTPGRMVDVLDRQMTALKNCNYLILDEVDRMIDMGS
EPQLAQVLECIPEEGRQTFMYSATMSPAVDRMTRSYFKDPVVITMGETGK
AADNSEKRIEFFSS*
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spliced messenger RNA

>Gchil8331.t1 ID=Gchil8331.t1|Name=Gchil8331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00004384_pilon:2071535..2072029- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCAACCATTGCAAGCAACGGTCTATACGCCTTAGTAGTAGCCCC
AACCCGTGAACATGCTCTACAGATAGTAACTGAAGCAAAGAAGTGTACTT
ATCCGATGAGATACAGGGTTGTTGCAAGTATTGGCTGTAAAGAAAAGGAC
GTACAGGCAATGTCGCTTCAAGCTGTTTGTGATGTTGTTGTCTGCACACC
TGGACGAATGGTAGACGTACTTGATCGGCAAATGACTGCACTTAAGAATT
GCAACTACCTGATTCTTGACGAAGTAGACAGAATGATTGACATGGGTTCT
GAACCACAACTAGCTCAAGTTCTTGAATGCATACCGGAGGAGGGCCGCCA
AACTTTCATGTACAGTGCCACAATGTCGCCGGCTGTTGACCGTATGACGA
GGAGCTATTTCAAGGATCCCGTCGTAATTACGATGGGAGAGACCGGAAAA
GCAGCTGATAATTCTGAAAAACGAATAGAATTCTTTAGTTCGTAA
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protein sequence of Gchil8331.t1

>Gchil8331.t1 ID=Gchil8331.t1|Name=Gchil8331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=165bp
MSATIASNGLYALVVAPTREHALQIVTEAKKCTYPMRYRVVASIGCKEKD
VQAMSLQAVCDVVVCTPGRMVDVLDRQMTALKNCNYLILDEVDRMIDMGS
EPQLAQVLECIPEEGRQTFMYSATMSPAVDRMTRSYFKDPVVITMGETGK
AADNSEKRIEFFSS*
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mRNA from alignment at tig00004384_pilon:2071535..2072029-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8331.t1 ID=Gchil8331.t1|Name=Gchil8331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00004384_pilon:2071535..2072029- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCAACCATTGCAAGCAACGGTCTATACGCCTTAGTAGTAGCCCC
AACCCGTGAACATGCTCTACAGATAGTAACTGAAGCAAAGAAGTGTACTT
ATCCGATGAGATACAGGGTTGTTGCAAGTATTGGCTGTAAAGAAAAGGAC
GTACAGGCAATGTCGCTTCAAGCTGTTTGTGATGTTGTTGTCTGCACACC
TGGACGAATGGTAGACGTACTTGATCGGCAAATGACTGCACTTAAGAATT
GCAACTACCTGATTCTTGACGAAGTAGACAGAATGATTGACATGGGTTCT
GAACCACAACTAGCTCAAGTTCTTGAATGCATACCGGAGGAGGGCCGCCA
AACTTTCATGTACAGTGCCACAATGTCGCCGGCTGTTGACCGTATGACGA
GGAGCTATTTCAAGGATCCCGTCGTAATTACGATGGGAGAGACCGGAAAA
GCAGCTGATAATTCTGAAAAACGAATAGAATTCTTTAGTTCGTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:2071535..2072029-

>Gchil8331.t1 ID=Gchil8331.t1|Name=Gchil8331.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00004384_pilon:2071535..2072029- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCAACCATTGCAAGCAACGGTCTATACGCCTTAGTAGTAGCCCC
AACCCGTGAACATGCTCTACAGATAGTAACTGAAGCAAAGAAGTGTACTT
ATCCGATGAGATACAGGGTTGTTGCAAGTATTGGCTGTAAAGAAAAGGAC
GTACAGGCAATGTCGCTTCAAGCTGTTTGTGATGTTGTTGTCTGCACACC
TGGACGAATGGTAGACGTACTTGATCGGCAAATGACTGCACTTAAGAATT
GCAACTACCTGATTCTTGACGAAGTAGACAGAATGATTGACATGGGTTCT
GAACCACAACTAGCTCAAGTTCTTGAATGCATACCGGAGGAGGGCCGCCA
AACTTTCATGTACAGTGCCACAATGTCGCCGGCTGTTGACCGTATGACGA
GGAGCTATTTCAAGGATCCCGTCGTAATTACGATGGGAGAGACCGGAAAA
GCAGCTGATAATTCTGAAAAACGAATAGAATTCTTTAGTTCGTAA
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