Gchil8329.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8329.t1
Unique NameGchil8329.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:2025289..2025990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_088_00001.1
Max annot lvl35493|Streptophyta
KEGG koko:K11267
Evalue8.66e-05
EggNOG OGsKOG1525@1|root,KOG1525@2759|Eukaryota,37KXZ@33090|Viridiplantae,3G77Y@35493|Streptophyta
DescriptionSister chromatid cohesion protein PDS5 homolog
COG categoryD
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8329Gchil8329Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 2025289..2025990 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8329.t1.stop1Gchil8329.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 2025289..2025291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8329.t1.CDS1Gchil8329.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 2025289..2025990 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8329.t1.exon1Gchil8329.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 2025289..2025990 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8329.t1.start1Gchil8329.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 2025988..2025990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8329.t1Gchil8329.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 2025289..2025990 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8329.t1 ID=Gchil8329.t1|Name=Gchil8329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=234bp
MVEVFLKTGHDKRRIWSNGRPVLEYDHTICAFTVPGRNGGQVRAAVEHIR
LALEDNSLANDVQESIDELDLQLPLNINNKLGSPDANQVLDRTLPDPASF
DAYFSSPLQIHGTSSDTNLPLMPNVGDTIEFYWPFDDKYYPGTVVSHIKD
GDRYQINYEDGEQKTLHFHDETWRGALGSGLDAVNSNEIQLSPGMELTSH
EKDDVKLYFQELQHKEFLANHAQVIPAYVIHNA*
back to top

spliced messenger RNA

>Gchil8329.t1 ID=Gchil8329.t1|Name=Gchil8329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00004384_pilon:2025289..2025990- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAAGTATTTCTCAAAACAGGTCATGACAAGCGTCGTATATGGTC
AAATGGTCGACCTGTTCTTGAGTATGACCATACCATTTGTGCTTTTACTG
TTCCTGGGAGGAATGGAGGTCAAGTTCGTGCTGCTGTAGAACACATACGT
CTTGCGCTTGAAGACAATTCCCTTGCAAATGATGTACAGGAATCGATCGA
TGAACTCGATTTGCAACTGCCACTGAACATTAACAATAAGCTTGGTTCCC
CTGATGCCAATCAAGTTCTGGACCGGACCCTTCCGGACCCCGCATCATTT
GATGCATATTTCTCCAGCCCCCTTCAGATTCATGGCACTTCTTCAGATAC
AAATCTTCCCTTGATGCCTAATGTTGGTGACACCATTGAATTTTATTGGC
CATTCGATGACAAATACTACCCAGGTACAGTGGTGAGCCATATTAAAGAT
GGAGACCGGTACCAAATCAACTATGAAGATGGAGAACAGAAAACGCTTCA
TTTCCATGATGAGACTTGGAGAGGTGCTCTAGGGTCTGGTTTGGATGCAG
TAAATTCGAATGAGATTCAACTATCTCCCGGAATGGAACTCACTAGCCAT
GAGAAGGATGATGTCAAGCTCTACTTTCAGGAGTTGCAGCACAAAGAGTT
TCTTGCCAACCATGCTCAAGTTATACCTGCCTATGTCATACACAACGCGT
AG
back to top

protein sequence of Gchil8329.t1

>Gchil8329.t1 ID=Gchil8329.t1|Name=Gchil8329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=234bp
MVEVFLKTGHDKRRIWSNGRPVLEYDHTICAFTVPGRNGGQVRAAVEHIR
LALEDNSLANDVQESIDELDLQLPLNINNKLGSPDANQVLDRTLPDPASF
DAYFSSPLQIHGTSSDTNLPLMPNVGDTIEFYWPFDDKYYPGTVVSHIKD
GDRYQINYEDGEQKTLHFHDETWRGALGSGLDAVNSNEIQLSPGMELTSH
EKDDVKLYFQELQHKEFLANHAQVIPAYVIHNA*
back to top

mRNA from alignment at tig00004384_pilon:2025289..2025990-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8329.t1 ID=Gchil8329.t1|Name=Gchil8329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00004384_pilon:2025289..2025990- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGAAGTATTTCTCAAAACAGGTCATGACAAGCGTCGTATATGGTC
AAATGGTCGACCTGTTCTTGAGTATGACCATACCATTTGTGCTTTTACTG
TTCCTGGGAGGAATGGAGGTCAAGTTCGTGCTGCTGTAGAACACATACGT
CTTGCGCTTGAAGACAATTCCCTTGCAAATGATGTACAGGAATCGATCGA
TGAACTCGATTTGCAACTGCCACTGAACATTAACAATAAGCTTGGTTCCC
CTGATGCCAATCAAGTTCTGGACCGGACCCTTCCGGACCCCGCATCATTT
GATGCATATTTCTCCAGCCCCCTTCAGATTCATGGCACTTCTTCAGATAC
AAATCTTCCCTTGATGCCTAATGTTGGTGACACCATTGAATTTTATTGGC
CATTCGATGACAAATACTACCCAGGTACAGTGGTGAGCCATATTAAAGAT
GGAGACCGGTACCAAATCAACTATGAAGATGGAGAACAGAAAACGCTTCA
TTTCCATGATGAGACTTGGAGAGGTGCTCTAGGGTCTGGTTTGGATGCAG
TAAATTCGAATGAGATTCAACTATCTCCCGGAATGGAACTCACTAGCCAT
GAGAAGGATGATGTCAAGCTCTACTTTCAGGAGTTGCAGCACAAAGAGTT
TCTTGCCAACCATGCTCAAGTTATACCTGCCTATGTCATACACAACGCGT
AG
back to top

Coding sequence (CDS) from alignment at tig00004384_pilon:2025289..2025990-

>Gchil8329.t1 ID=Gchil8329.t1|Name=Gchil8329.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00004384_pilon:2025289..2025990- (Gracilaria chilensis NLEC103_M9 male)
ATGGTGGAAGTATTTCTCAAAACAGGTCATGACAAGCGTCGTATATGGTC
AAATGGTCGACCTGTTCTTGAGTATGACCATACCATTTGTGCTTTTACTG
TTCCTGGGAGGAATGGAGGTCAAGTTCGTGCTGCTGTAGAACACATACGT
CTTGCGCTTGAAGACAATTCCCTTGCAAATGATGTACAGGAATCGATCGA
TGAACTCGATTTGCAACTGCCACTGAACATTAACAATAAGCTTGGTTCCC
CTGATGCCAATCAAGTTCTGGACCGGACCCTTCCGGACCCCGCATCATTT
GATGCATATTTCTCCAGCCCCCTTCAGATTCATGGCACTTCTTCAGATAC
AAATCTTCCCTTGATGCCTAATGTTGGTGACACCATTGAATTTTATTGGC
CATTCGATGACAAATACTACCCAGGTACAGTGGTGAGCCATATTAAAGAT
GGAGACCGGTACCAAATCAACTATGAAGATGGAGAACAGAAAACGCTTCA
TTTCCATGATGAGACTTGGAGAGGTGCTCTAGGGTCTGGTTTGGATGCAG
TAAATTCGAATGAGATTCAACTATCTCCCGGAATGGAACTCACTAGCCAT
GAGAAGGATGATGTCAAGCTCTACTTTCAGGAGTTGCAGCACAAAGAGTT
TCTTGCCAACCATGCTCAAGTTATACCTGCCTATGTCATACACAACGCGT
AG
back to top