Gchil8326.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8326.t1
Unique NameGchil8326.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1975676..1976795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8326Gchil8326Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1975676..1976795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8326.t1Gchil8326.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1975676..1976795 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8326.t1.start1Gchil8326.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1975676..1975678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8326.t1.CDS1Gchil8326.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1975676..1976028 +
Gchil8326.t1.CDS2Gchil8326.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1976107..1976184 +
Gchil8326.t1.CDS3Gchil8326.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1976288..1976795 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8326.t1.exon1Gchil8326.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1975676..1976028 +
Gchil8326.t1.exon2Gchil8326.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1976107..1976184 +
Gchil8326.t1.exon3Gchil8326.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1976288..1976795 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8326.t1.intron1Gchil8326.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1976029..1976106 +
Gchil8326.t1.intron2Gchil8326.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1976185..1976287 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8326.t1.stop1Gchil8326.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1976793..1976795 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8326.t1 ID=Gchil8326.t1|Name=Gchil8326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=313bp
MVKYSKSNKEKFCPIEIRPLKPHEKKLICEDRAAPESALTSALRMFSDRC
DHQPSSLFQPILRYSRRENSDPTLLVTELANQFEIPLANLAMESANAEGE
VSDILNRIMRRAETGTKTGAPLPSSKGSGAAVRIAIGVSDVHGEAPRFRT
ALDRMKILSAFLHACLTERALNRPVEFRRSYELFESNLAAGWILTQPASA
NLYSGAAVLSLSQQVETSVYDFHIENDTDQEVLDVLADDIFSKERMDSIT
SGTISVAEPPREADVVRTSINREDRDAFGLNFLQKQAQNGIICRQRRQGR
RDRRKIELLLKI*
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spliced messenger RNA

>Gchil8326.t1 ID=Gchil8326.t1|Name=Gchil8326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00004384_pilon:1975676..1976795+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAGTACTCTAAGTCTAATAAAGAAAAGTTTTGTCCGATAGAAAT
CAGGCCTCTGAAACCACATGAAAAGAAGCTAATCTGTGAAGACCGTGCTG
CGCCTGAATCGGCACTAACGTCGGCGCTTCGTATGTTTTCCGATAGATGT
GACCACCAGCCTTCCTCTCTTTTTCAGCCTATTCTGCGCTACAGTCGACG
AGAGAATTCAGATCCTACTCTACTCGTCACTGAACTAGCGAACCAGTTCG
AAATACCACTCGCAAATCTTGCGATGGAATCTGCCAATGCAGAAGGTGAG
GTTTCAGATATTCTGAACCGTATCATGCGAAGAGCGGAAACAGGGACGAA
AACAGGCGCTCCCCTACCTTCTTCTAAAGGTAGCGGAGCTGCCGTCCGCA
TCGCCATCGGTGTCTCTGATGTCCATGGCGAGGCACCAAGATTCAGAACC
GCCCTTGATCGTATGAAAATCCTCTCGGCCTTTTTGCATGCGTGCTTAAC
CGAAAGAGCTCTGAATAGACCGGTTGAATTTAGAAGGAGTTATGAGTTAT
TTGAATCAAATCTTGCGGCTGGATGGATCCTGACTCAGCCAGCATCAGCT
AACCTCTACTCTGGAGCTGCTGTACTGAGTCTCTCTCAACAAGTAGAGAC
GTCTGTTTACGATTTCCATATCGAGAATGATACAGACCAGGAAGTTTTGG
ATGTTCTTGCCGATGATATTTTTTCTAAGGAGCGTATGGATTCCATCACA
TCGGGGACTATAAGCGTTGCGGAACCGCCACGGGAAGCAGATGTTGTTCG
AACTTCAATCAACCGAGAGGATAGGGACGCTTTTGGCTTAAATTTCCTTC
AGAAACAAGCCCAGAATGGTATTATATGCCGTCAGCGACGACAAGGGCGA
AGAGATCGAAGGAAGATAGAGTTGCTGTTAAAAATTTAG
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protein sequence of Gchil8326.t1

>Gchil8326.t1 ID=Gchil8326.t1|Name=Gchil8326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=313bp
MVKYSKSNKEKFCPIEIRPLKPHEKKLICEDRAAPESALTSALRMFSDRC
DHQPSSLFQPILRYSRRENSDPTLLVTELANQFEIPLANLAMESANAEGE
VSDILNRIMRRAETGTKTGAPLPSSKGSGAAVRIAIGVSDVHGEAPRFRT
ALDRMKILSAFLHACLTERALNRPVEFRRSYELFESNLAAGWILTQPASA
NLYSGAAVLSLSQQVETSVYDFHIENDTDQEVLDVLADDIFSKERMDSIT
SGTISVAEPPREADVVRTSINREDRDAFGLNFLQKQAQNGIICRQRRQGR
RDRRKIELLLKI*
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mRNA from alignment at tig00004384_pilon:1975676..1976795+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8326.t1 ID=Gchil8326.t1|Name=Gchil8326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1120bp|location=Sequence derived from alignment at tig00004384_pilon:1975676..1976795+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGAAGTACTCTAAGTCTAATAAAGAAAAGTTTTGTCCGATAGAAAT
CAGGCCTCTGAAACCACATGAAAAGAAGCTAATCTGTGAAGACCGTGCTG
CGCCTGAATCGGCACTAACGTCGGCGCTTCGTATGTTTTCCGATAGATGT
GACCACCAGCCTTCCTCTCTTTTTCAGCCTATTCTGCGCTACAGTCGACG
AGAGAATTCAGATCCTACTCTACTCGTCACTGAACTAGCGAACCAGTTCG
AAATACCACTCGCAAATCTTGCGATGGAATCTGCCAATGCAGAAGGTGAG
GTTTCAGATATTCTGAACCGTATCATGCGAAGAGCGGAAACAGGGACGAA
AACGTTAGTGCTACTCAAGAACATGCACATAGCGAGCTAAACAACCATAA
ATAGGATTTAATCCTTTCTTCTCCCCAATAGAGGCGCTCCCCTACCTTCT
TCTAAAGGTAGCGGAGCTGCCGTCCGCATCGCCATCGGTGTCTCTGATGT
CCATGGCGAGTACTTTCAACTTCTTTTCATTTGAATCTCCGAGAAATTTC
CGCACTAGTACGATTTTCGCTATTGAACGTTCGTCGTCGTTCGAGAATGA
TCACAATTTCAGGGCACCAAGATTCAGAACCGCCCTTGATCGTATGAAAA
TCCTCTCGGCCTTTTTGCATGCGTGCTTAACCGAAAGAGCTCTGAATAGA
CCGGTTGAATTTAGAAGGAGTTATGAGTTATTTGAATCAAATCTTGCGGC
TGGATGGATCCTGACTCAGCCAGCATCAGCTAACCTCTACTCTGGAGCTG
CTGTACTGAGTCTCTCTCAACAAGTAGAGACGTCTGTTTACGATTTCCAT
ATCGAGAATGATACAGACCAGGAAGTTTTGGATGTTCTTGCCGATGATAT
TTTTTCTAAGGAGCGTATGGATTCCATCACATCGGGGACTATAAGCGTTG
CGGAACCGCCACGGGAAGCAGATGTTGTTCGAACTTCAATCAACCGAGAG
GATAGGGACGCTTTTGGCTTAAATTTCCTTCAGAAACAAGCCCAGAATGG
TATTATATGCCGTCAGCGACGACAAGGGCGAAGAGATCGAAGGAAGATAG
AGTTGCTGTTAAAAATTTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:1975676..1976795+

>Gchil8326.t1 ID=Gchil8326.t1|Name=Gchil8326.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00004384_pilon:1975676..1976795+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTGAAGTACTCTAAGTCTAATAAAGAAAAGTTTTGTCCGATAGAAAT
CAGGCCTCTGAAACCACATGAAAAGAAGCTAATCTGTGAAGACCGTGCTG
CGCCTGAATCGGCACTAACGTCGGCGCTTCGTATGTTTTCCGATAGATGT
GACCACCAGCCTTCCTCTCTTTTTCAGCCTATTCTGCGCTACAGTCGACG
AGAGAATTCAGATCCTACTCTACTCGTCACTGAACTAGCGAACCAGTTCG
AAATACCACTCGCAAATCTTGCGATGGAATCTGCCAATGCAGAAGGTGAG
GTTTCAGATATTCTGAACCGTATCATGCGAAGAGCGGAAACAGGGACGAA
AACAGGCGCTCCCCTACCTTCTTCTAAAGGTAGCGGAGCTGCCGTCCGCA
TCGCCATCGGTGTCTCTGATGTCCATGGCGAGGCACCAAGATTCAGAACC
GCCCTTGATCGTATGAAAATCCTCTCGGCCTTTTTGCATGCGTGCTTAAC
CGAAAGAGCTCTGAATAGACCGGTTGAATTTAGAAGGAGTTATGAGTTAT
TTGAATCAAATCTTGCGGCTGGATGGATCCTGACTCAGCCAGCATCAGCT
AACCTCTACTCTGGAGCTGCTGTACTGAGTCTCTCTCAACAAGTAGAGAC
GTCTGTTTACGATTTCCATATCGAGAATGATACAGACCAGGAAGTTTTGG
ATGTTCTTGCCGATGATATTTTTTCTAAGGAGCGTATGGATTCCATCACA
TCGGGGACTATAAGCGTTGCGGAACCGCCACGGGAAGCAGATGTTGTTCG
AACTTCAATCAACCGAGAGGATAGGGACGCTTTTGGCTTAAATTTCCTTC
AGAAACAAGCCCAGAATGGTATTATATGCCGTCAGCGACGACAAGGGCGA
AGAGATCGAAGGAAGATAGAGTTGCTGTTAAAAATTTAG
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