Gchil8318.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8318.t1
Unique NameGchil8318.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1560668..1561620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8318Gchil8318Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1560668..1561620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8318.t1Gchil8318.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1560668..1561620 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8318.t1.start1Gchil8318.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1560668..1560670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8318.t1.CDS1Gchil8318.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1560668..1561004 +
Gchil8318.t1.CDS2Gchil8318.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1561061..1561620 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8318.t1.exon1Gchil8318.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1560668..1561004 +
Gchil8318.t1.exon2Gchil8318.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1561061..1561620 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8318.t1.intron1Gchil8318.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1561005..1561060 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8318.t1.stop1Gchil8318.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1561618..1561620 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8318.t1 ID=Gchil8318.t1|Name=Gchil8318.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=299bp
MHTLTMSVLCAERLHMKETVALAALLYTLDGAYGLKALIVEVMRVRHGDH
KELDGMCVATRRSVSASFSCTPRYNQVYEHIAEPHDDMQSCNLLTARLSI
RLHERYRIRVEFKTGMRFARDGPELQKIFDNGEPMMVMHARHTSARLHAW
VRLWRGFVKLPALSSAEKFANVVGGDGAQIYIASTLQSCYMEKMAATAKA
LRYDAYVIVTGRQNDITGVDLGAFPHTVLPCGSREGSGASTRRQVRFRAR
SAQRKECPPRRVQRAAGDKRRFEFKSTGGTAKMSTACLTGALQPRGRL*
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spliced messenger RNA

>Gchil8318.t1 ID=Gchil8318.t1|Name=Gchil8318.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=897bp|location=Sequence derived from alignment at tig00004384_pilon:1560668..1561620+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACACGTTAACGATGAGCGTTCTGTGCGCAGAGCGGCTGCATATGAA
AGAGACGGTGGCGCTTGCCGCGCTGCTGTACACATTAGACGGTGCCTATG
GGCTCAAGGCTTTGATCGTGGAAGTTATGCGTGTGCGACATGGAGACCAC
AAAGAACTGGATGGGATGTGCGTGGCGACAAGACGCTCGGTGAGCGCATC
GTTTTCTTGTACGCCTCGCTACAATCAGGTGTACGAGCACATTGCCGAGC
CGCATGACGACATGCAATCGTGCAATCTGCTGACGGCGCGGCTGTCTATT
CGCCTGCACGAGCGCTATAGAATACGCGTGGAATTCAAAACGGGCATGCG
CTTCGCCAGAGACGGCCCGGAACTGCAGAAGATATTCGACAACGGCGAAC
CGATGATGGTCATGCATGCGCGCCATACCAGTGCCAGGTTGCACGCATGG
GTGCGCTTGTGGCGTGGATTCGTGAAGTTACCTGCCCTTTCTAGCGCCGA
GAAGTTTGCCAACGTGGTGGGCGGTGACGGAGCGCAGATATATATCGCCA
GCACCCTACAATCCTGCTACATGGAGAAGATGGCTGCCACAGCCAAAGCG
CTGCGCTACGACGCATACGTAATCGTGACGGGCAGACAGAACGACATCAC
GGGCGTGGATTTGGGCGCCTTTCCTCATACCGTGCTTCCGTGTGGCAGTC
GGGAAGGCAGTGGCGCATCTACGCGGCGCCAGGTGCGCTTTCGAGCACGC
TCTGCACAGCGAAAAGAATGCCCCCCGAGGCGCGTGCAGCGCGCGGCGGG
CGACAAGAGACGTTTCGAATTTAAAAGTACGGGCGGCACGGCAAAGATGT
CAACGGCTTGTTTGACCGGCGCGCTGCAGCCCCGCGGCCGGCTTTAA
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protein sequence of Gchil8318.t1

>Gchil8318.t1 ID=Gchil8318.t1|Name=Gchil8318.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=299bp
MHTLTMSVLCAERLHMKETVALAALLYTLDGAYGLKALIVEVMRVRHGDH
KELDGMCVATRRSVSASFSCTPRYNQVYEHIAEPHDDMQSCNLLTARLSI
RLHERYRIRVEFKTGMRFARDGPELQKIFDNGEPMMVMHARHTSARLHAW
VRLWRGFVKLPALSSAEKFANVVGGDGAQIYIASTLQSCYMEKMAATAKA
LRYDAYVIVTGRQNDITGVDLGAFPHTVLPCGSREGSGASTRRQVRFRAR
SAQRKECPPRRVQRAAGDKRRFEFKSTGGTAKMSTACLTGALQPRGRL*
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mRNA from alignment at tig00004384_pilon:1560668..1561620+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8318.t1 ID=Gchil8318.t1|Name=Gchil8318.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=953bp|location=Sequence derived from alignment at tig00004384_pilon:1560668..1561620+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACACGTTAACGATGAGCGTTCTGTGCGCAGAGCGGCTGCATATGAA
AGAGACGGTGGCGCTTGCCGCGCTGCTGTACACATTAGACGGTGCCTATG
GGCTCAAGGCTTTGATCGTGGAAGTTATGCGTGTGCGACATGGAGACCAC
AAAGAACTGGATGGGATGTGCGTGGCGACAAGACGCTCGGTGAGCGCATC
GTTTTCTTGTACGCCTCGCTACAATCAGGTGTACGAGCACATTGCCGAGC
CGCATGACGACATGCAATCGTGCAATCTGCTGACGGCGCGGCTGTCTATT
CGCCTGCACGAGCGCTATAGAATACGCGTGGAATTCAGTGTGTGCCAGTC
AAGCCGACCCAATTATTGCCCCAATTGCGTGACGTGGCGCTAGAAACGGG
CATGCGCTTCGCCAGAGACGGCCCGGAACTGCAGAAGATATTCGACAACG
GCGAACCGATGATGGTCATGCATGCGCGCCATACCAGTGCCAGGTTGCAC
GCATGGGTGCGCTTGTGGCGTGGATTCGTGAAGTTACCTGCCCTTTCTAG
CGCCGAGAAGTTTGCCAACGTGGTGGGCGGTGACGGAGCGCAGATATATA
TCGCCAGCACCCTACAATCCTGCTACATGGAGAAGATGGCTGCCACAGCC
AAAGCGCTGCGCTACGACGCATACGTAATCGTGACGGGCAGACAGAACGA
CATCACGGGCGTGGATTTGGGCGCCTTTCCTCATACCGTGCTTCCGTGTG
GCAGTCGGGAAGGCAGTGGCGCATCTACGCGGCGCCAGGTGCGCTTTCGA
GCACGCTCTGCACAGCGAAAAGAATGCCCCCCGAGGCGCGTGCAGCGCGC
GGCGGGCGACAAGAGACGTTTCGAATTTAAAAGTACGGGCGGCACGGCAA
AGATGTCAACGGCTTGTTTGACCGGCGCGCTGCAGCCCCGCGGCCGGCTT
TAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:1560668..1561620+

>Gchil8318.t1 ID=Gchil8318.t1|Name=Gchil8318.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=897bp|location=Sequence derived from alignment at tig00004384_pilon:1560668..1561620+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACACGTTAACGATGAGCGTTCTGTGCGCAGAGCGGCTGCATATGAA
AGAGACGGTGGCGCTTGCCGCGCTGCTGTACACATTAGACGGTGCCTATG
GGCTCAAGGCTTTGATCGTGGAAGTTATGCGTGTGCGACATGGAGACCAC
AAAGAACTGGATGGGATGTGCGTGGCGACAAGACGCTCGGTGAGCGCATC
GTTTTCTTGTACGCCTCGCTACAATCAGGTGTACGAGCACATTGCCGAGC
CGCATGACGACATGCAATCGTGCAATCTGCTGACGGCGCGGCTGTCTATT
CGCCTGCACGAGCGCTATAGAATACGCGTGGAATTCAAAACGGGCATGCG
CTTCGCCAGAGACGGCCCGGAACTGCAGAAGATATTCGACAACGGCGAAC
CGATGATGGTCATGCATGCGCGCCATACCAGTGCCAGGTTGCACGCATGG
GTGCGCTTGTGGCGTGGATTCGTGAAGTTACCTGCCCTTTCTAGCGCCGA
GAAGTTTGCCAACGTGGTGGGCGGTGACGGAGCGCAGATATATATCGCCA
GCACCCTACAATCCTGCTACATGGAGAAGATGGCTGCCACAGCCAAAGCG
CTGCGCTACGACGCATACGTAATCGTGACGGGCAGACAGAACGACATCAC
GGGCGTGGATTTGGGCGCCTTTCCTCATACCGTGCTTCCGTGTGGCAGTC
GGGAAGGCAGTGGCGCATCTACGCGGCGCCAGGTGCGCTTTCGAGCACGC
TCTGCACAGCGAAAAGAATGCCCCCCGAGGCGCGTGCAGCGCGCGGCGGG
CGACAAGAGACGTTTCGAATTTAAAAGTACGGGCGGCACGGCAAAGATGT
CAACGGCTTGTTTGACCGGCGCGCTGCAGCCCCGCGGCCGGCTTTAA
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