Gchil8317.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8317.t2
Unique NameGchil8317.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1532651..1533292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1380390.JIAT01000009_gene581
PFAMsBeta_propel
Max annot lvl84995|Rubrobacteria
Evalue2.8e-07
EggNOG OGsCOG1948@1|root,COG4880@2|Bacteria,2I8JU@201174|Actinobacteria,4CS4T@84995|Rubrobacteria
DescriptionBeta propeller domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8317Gchil8317Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1531226..1533292 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t2.stop1Gchil8317.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1532651..1532653 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t2.CDS1Gchil8317.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1532651..1533292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t2.exon1Gchil8317.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1532651..1533292 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t2.start1Gchil8317.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1533290..1533292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t2Gchil8317.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1532651..1533292 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8317.t2 ID=Gchil8317.t2|Name=Gchil8317.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=214bp
MIAPNPFQKQPRTQRRTMAFFFKSISLAFLLSLLANAAHARLINKFGNCQ
ELKNYYVNTIVDDVDKYGYHVHSAYTPQRDPRSIPNDYDPGTPGGPVGIP
LHRPFATPRRVAGGNLTEADRHTTLDHTDDNGLVAGVDFSSINVQATGVD
DEPDVIKTDGRRVFTISSFTFSVVPVQDGGKADRRVGRLQLPTMVRDMLI
EGDFVLVFGTIYT*
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spliced messenger RNA

>Gchil8317.t2 ID=Gchil8317.t2|Name=Gchil8317.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00004384_pilon:1532651..1533292- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCGCCAAATCCCTTTCAGAAACAGCCTCGAACCCAAAGGAGAAC
AATGGCCTTCTTCTTCAAGTCCATCTCCCTGGCTTTCCTCCTTTCCTTGC
TTGCCAACGCTGCCCATGCGCGCCTCATTAACAAGTTTGGCAACTGCCAG
GAGCTCAAAAACTACTACGTCAACACCATCGTCGATGACGTCGATAAATA
CGGCTACCATGTCCATAGCGCATACACTCCACAACGCGATCCGAGATCGA
TCCCGAATGATTATGATCCTGGAACCCCGGGTGGCCCCGTCGGAATTCCC
CTCCACCGCCCTTTCGCTACACCGCGGCGGGTAGCGGGCGGCAATCTCAC
CGAGGCGGATCGCCACACCACCTTGGATCACACCGATGACAATGGTCTTG
TCGCAGGCGTCGACTTTTCCTCAATCAACGTTCAGGCCACGGGTGTTGAC
GACGAGCCGGACGTTATCAAGACGGACGGCCGCCGTGTGTTCACCATCAG
CAGCTTCACTTTTTCCGTTGTGCCAGTGCAGGACGGAGGAAAAGCCGACC
GACGTGTGGGCCGGTTGCAGTTGCCCACCATGGTGCGCGATATGTTGATT
GAAGGTGACTTCGTGCTTGTCTTTGGCACCATCTACACTTAA
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protein sequence of Gchil8317.t2

>Gchil8317.t2 ID=Gchil8317.t2|Name=Gchil8317.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=214bp
MIAPNPFQKQPRTQRRTMAFFFKSISLAFLLSLLANAAHARLINKFGNCQ
ELKNYYVNTIVDDVDKYGYHVHSAYTPQRDPRSIPNDYDPGTPGGPVGIP
LHRPFATPRRVAGGNLTEADRHTTLDHTDDNGLVAGVDFSSINVQATGVD
DEPDVIKTDGRRVFTISSFTFSVVPVQDGGKADRRVGRLQLPTMVRDMLI
EGDFVLVFGTIYT*
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mRNA from alignment at tig00004384_pilon:1532651..1533292-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8317.t2 ID=Gchil8317.t2|Name=Gchil8317.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00004384_pilon:1532651..1533292- (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCGCCAAATCCCTTTCAGAAACAGCCTCGAACCCAAAGGAGAAC
AATGGCCTTCTTCTTCAAGTCCATCTCCCTGGCTTTCCTCCTTTCCTTGC
TTGCCAACGCTGCCCATGCGCGCCTCATTAACAAGTTTGGCAACTGCCAG
GAGCTCAAAAACTACTACGTCAACACCATCGTCGATGACGTCGATAAATA
CGGCTACCATGTCCATAGCGCATACACTCCACAACGCGATCCGAGATCGA
TCCCGAATGATTATGATCCTGGAACCCCGGGTGGCCCCGTCGGAATTCCC
CTCCACCGCCCTTTCGCTACACCGCGGCGGGTAGCGGGCGGCAATCTCAC
CGAGGCGGATCGCCACACCACCTTGGATCACACCGATGACAATGGTCTTG
TCGCAGGCGTCGACTTTTCCTCAATCAACGTTCAGGCCACGGGTGTTGAC
GACGAGCCGGACGTTATCAAGACGGACGGCCGCCGTGTGTTCACCATCAG
CAGCTTCACTTTTTCCGTTGTGCCAGTGCAGGACGGAGGAAAAGCCGACC
GACGTGTGGGCCGGTTGCAGTTGCCCACCATGGTGCGCGATATGTTGATT
GAAGGTGACTTCGTGCTTGTCTTTGGCACCATCTACACTTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:1532651..1533292-

>Gchil8317.t2 ID=Gchil8317.t2|Name=Gchil8317.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00004384_pilon:1532651..1533292- (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCGCCAAATCCCTTTCAGAAACAGCCTCGAACCCAAAGGAGAAC
AATGGCCTTCTTCTTCAAGTCCATCTCCCTGGCTTTCCTCCTTTCCTTGC
TTGCCAACGCTGCCCATGCGCGCCTCATTAACAAGTTTGGCAACTGCCAG
GAGCTCAAAAACTACTACGTCAACACCATCGTCGATGACGTCGATAAATA
CGGCTACCATGTCCATAGCGCATACACTCCACAACGCGATCCGAGATCGA
TCCCGAATGATTATGATCCTGGAACCCCGGGTGGCCCCGTCGGAATTCCC
CTCCACCGCCCTTTCGCTACACCGCGGCGGGTAGCGGGCGGCAATCTCAC
CGAGGCGGATCGCCACACCACCTTGGATCACACCGATGACAATGGTCTTG
TCGCAGGCGTCGACTTTTCCTCAATCAACGTTCAGGCCACGGGTGTTGAC
GACGAGCCGGACGTTATCAAGACGGACGGCCGCCGTGTGTTCACCATCAG
CAGCTTCACTTTTTCCGTTGTGCCAGTGCAGGACGGAGGAAAAGCCGACC
GACGTGTGGGCCGGTTGCAGTTGCCCACCATGGTGCGCGATATGTTGATT
GAAGGTGACTTCGTGCTTGTCTTTGGCACCATCTACACTTAA
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