Gchil8311.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8311.t1
Unique NameGchil8311.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1483914..1484747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_002167629.1
Preferred namePURA
PFAMsPurA
Max annot lvl33208|Metazoa
KEGG koko:K21772,ko:K21799
GOsGO:0000003,GO:0000075,GO:0000228,GO:0000278,GO:0000781,GO:0000784,GO:0000900,GO:0000981,GO:0001067,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003691,GO:0003697,GO:0003700,GO:0003705,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005662,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006270,GO:0006355,GO:0006357,GO:0006417,GO:0006725,GO:0006807,GO:0006915,GO:0006996,GO:0007049,GO:0007093,GO:0007275,GO:0007276,GO:0007281,GO:0007346,GO:0007399,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0017148,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030154,GO:0030371,GO:0030425,GO:0030894,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031935,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032392,GO:0032422,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0036477,GO:0040012,GO:0042127,GO:0042162,GO:0042995,GO:0043005,GO:0043025,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044703,GO:0045182,GO:0045495,GO:0045786,GO:0045892,GO:0045930,GO:0045934,GO:0046332,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051704,GO:0051726,GO:0060255,GO:0060293,GO:0060968,GO:0065007,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090079,GO:0090304,GO:0097159,GO:0097447,GO:0097458,GO:0098687,GO:0120025,GO:0120038,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990124,GO:1990837,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue1.05e-11
EggNOG OGsKOG3074@1|root,KOG3074@2759|Eukaryota,39T4T@33154|Opisthokonta,3BGB4@33208|Metazoa
Descriptionpurine-rich negative regulatory element binding
COG categoryK
BRITEko00000,ko03019,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8311Gchil8311Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1483914..1484747 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8311.t1.start1Gchil8311.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1483914..1483916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8311.t1.CDS1Gchil8311.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1483914..1484747 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8311.t1.exon1Gchil8311.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1483914..1484747 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8311.t1.stop1Gchil8311.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1484745..1484747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8311.t1Gchil8311.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1483914..1484747 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8311.t1 ID=Gchil8311.t1|Name=Gchil8311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=278bp
MGENEADVPQDGVTILGYGIRDELMSVRITVGTRRVTMALCENDRGRFLR
LIDNRSRIMVPAAAIMQMRDALVALEHALETAPPPKQPTPPPTQPASPPA
NAVEQVKSELISSQRIASDGRKIFLDVMENAKGRYLKICKVSIRRINMII
PIQGLPFLREGLDMLLEKTPPDTSVTDPSSVQRLTRTVERVTPLNDGATV
TINIVQREIRTMGKRVIFESGANRRGSYIKISENNFPQRTSIILPHAAVP
QIIQLLEEVMQSGDPADALESAKAAQT*
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spliced messenger RNA

>Gchil8311.t1 ID=Gchil8311.t1|Name=Gchil8311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00004384_pilon:1483914..1484747+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGAGAACGAGGCAGACGTCCCGCAAGATGGCGTCACCATCCTCGG
CTATGGAATCCGTGACGAACTCATGAGCGTCCGCATCACCGTGGGAACTC
GTCGCGTCACCATGGCGCTCTGCGAGAATGATCGTGGAAGGTTTCTGCGT
CTCATCGACAACCGTTCGCGTATCATGGTGCCAGCCGCTGCCATTATGCA
GATGAGAGACGCGCTCGTCGCGCTGGAACATGCACTTGAGACCGCTCCGC
CCCCAAAGCAACCCACCCCACCTCCAACACAACCCGCTTCCCCCCCCGCC
AACGCCGTCGAGCAAGTCAAGTCCGAACTCATCAGCTCACAGCGTATTGC
CTCCGACGGTCGAAAGATCTTCCTCGACGTAATGGAAAACGCAAAGGGTC
GCTACCTCAAGATCTGCAAGGTTTCCATCCGTCGCATCAACATGATCATT
CCCATCCAAGGTCTTCCGTTTCTACGCGAGGGGCTCGACATGTTGTTGGA
GAAGACCCCCCCGGACACCTCTGTCACAGACCCCTCTTCTGTGCAGCGTC
TCACCCGCACCGTCGAGCGCGTAACCCCGCTCAATGACGGAGCTACGGTC
ACCATTAACATTGTGCAGCGCGAGATTCGCACTATGGGCAAACGCGTCAT
TTTCGAGTCGGGCGCTAATCGTCGCGGCAGCTACATCAAGATCTCTGAGA
ATAACTTTCCGCAACGAACATCCATCATTCTCCCTCACGCTGCCGTACCT
CAAATTATCCAACTCCTGGAGGAAGTCATGCAGAGCGGCGACCCCGCAGA
TGCACTAGAGTCTGCGAAGGCTGCTCAAACTTAA
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protein sequence of Gchil8311.t1

>Gchil8311.t1 ID=Gchil8311.t1|Name=Gchil8311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=278bp
MGENEADVPQDGVTILGYGIRDELMSVRITVGTRRVTMALCENDRGRFLR
LIDNRSRIMVPAAAIMQMRDALVALEHALETAPPPKQPTPPPTQPASPPA
NAVEQVKSELISSQRIASDGRKIFLDVMENAKGRYLKICKVSIRRINMII
PIQGLPFLREGLDMLLEKTPPDTSVTDPSSVQRLTRTVERVTPLNDGATV
TINIVQREIRTMGKRVIFESGANRRGSYIKISENNFPQRTSIILPHAAVP
QIIQLLEEVMQSGDPADALESAKAAQT*
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mRNA from alignment at tig00004384_pilon:1483914..1484747+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8311.t1 ID=Gchil8311.t1|Name=Gchil8311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00004384_pilon:1483914..1484747+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGAGAACGAGGCAGACGTCCCGCAAGATGGCGTCACCATCCTCGG
CTATGGAATCCGTGACGAACTCATGAGCGTCCGCATCACCGTGGGAACTC
GTCGCGTCACCATGGCGCTCTGCGAGAATGATCGTGGAAGGTTTCTGCGT
CTCATCGACAACCGTTCGCGTATCATGGTGCCAGCCGCTGCCATTATGCA
GATGAGAGACGCGCTCGTCGCGCTGGAACATGCACTTGAGACCGCTCCGC
CCCCAAAGCAACCCACCCCACCTCCAACACAACCCGCTTCCCCCCCCGCC
AACGCCGTCGAGCAAGTCAAGTCCGAACTCATCAGCTCACAGCGTATTGC
CTCCGACGGTCGAAAGATCTTCCTCGACGTAATGGAAAACGCAAAGGGTC
GCTACCTCAAGATCTGCAAGGTTTCCATCCGTCGCATCAACATGATCATT
CCCATCCAAGGTCTTCCGTTTCTACGCGAGGGGCTCGACATGTTGTTGGA
GAAGACCCCCCCGGACACCTCTGTCACAGACCCCTCTTCTGTGCAGCGTC
TCACCCGCACCGTCGAGCGCGTAACCCCGCTCAATGACGGAGCTACGGTC
ACCATTAACATTGTGCAGCGCGAGATTCGCACTATGGGCAAACGCGTCAT
TTTCGAGTCGGGCGCTAATCGTCGCGGCAGCTACATCAAGATCTCTGAGA
ATAACTTTCCGCAACGAACATCCATCATTCTCCCTCACGCTGCCGTACCT
CAAATTATCCAACTCCTGGAGGAAGTCATGCAGAGCGGCGACCCCGCAGA
TGCACTAGAGTCTGCGAAGGCTGCTCAAACTTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:1483914..1484747+

>Gchil8311.t1 ID=Gchil8311.t1|Name=Gchil8311.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00004384_pilon:1483914..1484747+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGAGAACGAGGCAGACGTCCCGCAAGATGGCGTCACCATCCTCGG
CTATGGAATCCGTGACGAACTCATGAGCGTCCGCATCACCGTGGGAACTC
GTCGCGTCACCATGGCGCTCTGCGAGAATGATCGTGGAAGGTTTCTGCGT
CTCATCGACAACCGTTCGCGTATCATGGTGCCAGCCGCTGCCATTATGCA
GATGAGAGACGCGCTCGTCGCGCTGGAACATGCACTTGAGACCGCTCCGC
CCCCAAAGCAACCCACCCCACCTCCAACACAACCCGCTTCCCCCCCCGCC
AACGCCGTCGAGCAAGTCAAGTCCGAACTCATCAGCTCACAGCGTATTGC
CTCCGACGGTCGAAAGATCTTCCTCGACGTAATGGAAAACGCAAAGGGTC
GCTACCTCAAGATCTGCAAGGTTTCCATCCGTCGCATCAACATGATCATT
CCCATCCAAGGTCTTCCGTTTCTACGCGAGGGGCTCGACATGTTGTTGGA
GAAGACCCCCCCGGACACCTCTGTCACAGACCCCTCTTCTGTGCAGCGTC
TCACCCGCACCGTCGAGCGCGTAACCCCGCTCAATGACGGAGCTACGGTC
ACCATTAACATTGTGCAGCGCGAGATTCGCACTATGGGCAAACGCGTCAT
TTTCGAGTCGGGCGCTAATCGTCGCGGCAGCTACATCAAGATCTCTGAGA
ATAACTTTCCGCAACGAACATCCATCATTCTCCCTCACGCTGCCGTACCT
CAAATTATCCAACTCCTGGAGGAAGTCATGCAGAGCGGCGACCCCGCAGA
TGCACTAGAGTCTGCGAAGGCTGCTCAAACTTAA
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