Gchil831.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil831.t1
Unique Name	Gchil831.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	588

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:152639..154402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1173028.ANKO01000041_gene3135
PFAMs	Amino_oxidase,NAD_binding_8
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01960
KEGG ko	ko:K09835
KEGG Reaction	R07512
KEGG Pathway	ko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG Module	M00097
Evalue	2.04e-130
EggNOG OGs	COG1233@1\|root,COG1233@2\|Bacteria,1G0AY@1117\|Cyanobacteria,1H879@1150\|Oscillatoriales
EC	5.2.1.13
Description	FAD dependent oxidoreductase
COG category	Q
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil831	Gchil831	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 152639..154402 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil831.t1.start1	Gchil831.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 152639..152641 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil831.t1.CDS1	Gchil831.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 152639..154402 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil831.t1.exon1	Gchil831.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 152639..154402 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil831.t1.stop1	Gchil831.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 154400..154402 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil831.t1	Gchil831.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 152639..154402 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:152639..154402+
coding sequence from alignment at tig00000017_pilon:152639..154402+

mRNA sequence

>Gchil831.t1 ID=Gchil831.t1|Name=Gchil831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=588bp
MVSYAFSSSFTGLRVFDRQITGGLSQGYSTQRRSTGGNRCKLLIRSSSSN
ESYDVITIGSGLGGLCASALLSTYNLRTLTLESHTELGGAAHSFSRTTPY
GTVTFESGPHLFSGLQFPSDNPMYHVLRAVDAKLDVTGYDAWGVFLPDSY
VRTTLRAREPLFEELLNVAGGPTARAEMENLTKVLRPLGVAATLLPPAAL
RASDIIGSVRVAARYAFSPSSLSHITRIPQLSQPFSTILDRYVSDRFSRN
FLNLLCFLLAGATAERVPVAEVAFMFREWLGDETIHGAPVLQRPVGGASA
IAKSLVEAIENHDGIVQTRTHVSRVMIEEGRAVGVQLKNGRIIRANRAVI
SNVSALDVNKLLPDWNTNDKNYQTEQSGREMCPSFMHLHVALKLTDDIRS
RLPQGNLEPNYVSVEDWGLGMEHPDNVVLISVPSVLDQDMCPVGHAVLHA
YTPATEPYEKWRDLEPGTTEYNEYKEKRSRILWKAINRIFGVDVRPNAYV
SLVGTPRTHARFLRRRYGSYGPKVDANLRGLGLPFPGSGDYPKGFCCVGD
GVFPGVGVPAVAGSAWIVANGIVSVGEQVELLKKIGL*

spliced messenger RNA

>Gchil831.t1 ID=Gchil831.t1|Name=Gchil831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00000017_pilon:152639..154402+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCATACGCATTTAGCTCTTCTTTCACGGGACTAAGAGTTTTTGA
CAGACAAATCACAGGCGGACTGTCACAGGGGTATTCTACGCAACGACGGT
CAACTGGAGGCAACCGTTGCAAGCTTCTCATTCGAAGCTCCTCGTCGAAT
GAAAGCTACGATGTTATTACAATCGGCTCGGGACTAGGTGGTCTTTGCGC
CTCAGCATTGCTTTCTACGTACAATCTACGCACACTCACTCTCGAGTCAC
ATACTGAGCTGGGTGGAGCAGCCCACTCTTTCTCAAGAACAACGCCGTAC
GGCACCGTGACATTTGAATCAGGACCTCATCTCTTCTCAGGTCTTCAGTT
TCCTTCGGACAACCCCATGTACCATGTTTTGCGCGCAGTTGATGCAAAGC
TTGACGTCACTGGCTACGACGCCTGGGGAGTGTTCCTCCCGGACTCGTAC
GTCCGAACAACGCTCAGAGCACGAGAACCGCTTTTTGAGGAACTCCTAAA
CGTAGCTGGAGGTCCAACCGCTCGGGCTGAAATGGAGAATCTTACGAAGG
TTTTGCGGCCATTGGGGGTGGCTGCAACTCTTTTGCCACCAGCAGCATTA
AGGGCTTCAGACATTATTGGTTCTGTTCGAGTTGCTGCTCGATACGCATT
TTCTCCAAGCTCCCTCTCACATATAACAAGAATACCGCAACTGTCTCAAC
CATTTTCAACAATTCTTGATCGCTATGTGTCTGACAGATTCTCTCGCAAT
TTTCTTAACCTCTTGTGTTTCTTGCTAGCCGGCGCAACAGCAGAACGGGT
TCCAGTCGCTGAGGTAGCCTTCATGTTCCGTGAATGGCTTGGTGATGAGA
CCATTCACGGCGCCCCTGTTCTGCAAAGACCTGTAGGTGGTGCTTCTGCG
ATAGCAAAGTCGCTGGTCGAGGCTATAGAAAACCATGATGGGATAGTGCA
AACAAGAACTCATGTAAGTCGCGTCATGATCGAAGAAGGTCGAGCAGTTG
GGGTGCAACTGAAAAACGGTCGGATCATCCGAGCCAATAGAGCTGTCATT
TCGAATGTCTCTGCTCTTGATGTGAACAAGTTGCTGCCGGATTGGAACAC
AAATGATAAGAACTATCAAACTGAACAAAGTGGTCGCGAAATGTGTCCAT
CCTTCATGCACCTTCACGTTGCACTCAAACTTACGGATGATATCCGATCT
CGCCTACCCCAAGGCAATCTGGAGCCGAACTATGTCAGCGTAGAAGACTG
GGGTCTTGGCATGGAGCATCCTGATAATGTGGTTCTGATTAGTGTGCCGT
CCGTGCTGGATCAGGATATGTGCCCAGTTGGTCACGCGGTGCTACATGCT
TACACACCAGCCACGGAACCATATGAAAAGTGGCGGGACCTAGAACCCGG
TACAACAGAATACAATGAATACAAAGAGAAGCGGTCTCGAATCTTGTGGA
AAGCAATTAATCGCATCTTCGGCGTTGATGTCCGTCCAAATGCGTACGTT
TCGCTTGTAGGTACTCCGCGAACTCATGCTCGCTTTCTTCGTCGACGATA
CGGGTCATATGGCCCAAAGGTTGATGCAAATTTGAGAGGTTTGGGTCTTC
CATTTCCGGGCAGTGGGGATTACCCGAAAGGATTTTGCTGTGTTGGTGAT
GGTGTGTTTCCAGGTGTGGGTGTCCCTGCTGTAGCTGGAAGCGCATGGAT
TGTGGCAAATGGAATAGTGAGTGTTGGGGAACAAGTTGAACTGCTAAAGA
AGATAGGATTATGA

protein sequence of Gchil831.t1

>Gchil831.t1 ID=Gchil831.t1|Name=Gchil831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=588bp
MVSYAFSSSFTGLRVFDRQITGGLSQGYSTQRRSTGGNRCKLLIRSSSSN
ESYDVITIGSGLGGLCASALLSTYNLRTLTLESHTELGGAAHSFSRTTPY
GTVTFESGPHLFSGLQFPSDNPMYHVLRAVDAKLDVTGYDAWGVFLPDSY
VRTTLRAREPLFEELLNVAGGPTARAEMENLTKVLRPLGVAATLLPPAAL
RASDIIGSVRVAARYAFSPSSLSHITRIPQLSQPFSTILDRYVSDRFSRN
FLNLLCFLLAGATAERVPVAEVAFMFREWLGDETIHGAPVLQRPVGGASA
IAKSLVEAIENHDGIVQTRTHVSRVMIEEGRAVGVQLKNGRIIRANRAVI
SNVSALDVNKLLPDWNTNDKNYQTEQSGREMCPSFMHLHVALKLTDDIRS
RLPQGNLEPNYVSVEDWGLGMEHPDNVVLISVPSVLDQDMCPVGHAVLHA
YTPATEPYEKWRDLEPGTTEYNEYKEKRSRILWKAINRIFGVDVRPNAYV
SLVGTPRTHARFLRRRYGSYGPKVDANLRGLGLPFPGSGDYPKGFCCVGD
GVFPGVGVPAVAGSAWIVANGIVSVGEQVELLKKIGL*

mRNA from alignment at tig00000017_pilon:152639..154402+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil831.t1 ID=Gchil831.t1|Name=Gchil831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00000017_pilon:152639..154402+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCATACGCATTTAGCTCTTCTTTCACGGGACTAAGAGTTTTTGA
CAGACAAATCACAGGCGGACTGTCACAGGGGTATTCTACGCAACGACGGT
CAACTGGAGGCAACCGTTGCAAGCTTCTCATTCGAAGCTCCTCGTCGAAT
GAAAGCTACGATGTTATTACAATCGGCTCGGGACTAGGTGGTCTTTGCGC
CTCAGCATTGCTTTCTACGTACAATCTACGCACACTCACTCTCGAGTCAC
ATACTGAGCTGGGTGGAGCAGCCCACTCTTTCTCAAGAACAACGCCGTAC
GGCACCGTGACATTTGAATCAGGACCTCATCTCTTCTCAGGTCTTCAGTT
TCCTTCGGACAACCCCATGTACCATGTTTTGCGCGCAGTTGATGCAAAGC
TTGACGTCACTGGCTACGACGCCTGGGGAGTGTTCCTCCCGGACTCGTAC
GTCCGAACAACGCTCAGAGCACGAGAACCGCTTTTTGAGGAACTCCTAAA
CGTAGCTGGAGGTCCAACCGCTCGGGCTGAAATGGAGAATCTTACGAAGG
TTTTGCGGCCATTGGGGGTGGCTGCAACTCTTTTGCCACCAGCAGCATTA
AGGGCTTCAGACATTATTGGTTCTGTTCGAGTTGCTGCTCGATACGCATT
TTCTCCAAGCTCCCTCTCACATATAACAAGAATACCGCAACTGTCTCAAC
CATTTTCAACAATTCTTGATCGCTATGTGTCTGACAGATTCTCTCGCAAT
TTTCTTAACCTCTTGTGTTTCTTGCTAGCCGGCGCAACAGCAGAACGGGT
TCCAGTCGCTGAGGTAGCCTTCATGTTCCGTGAATGGCTTGGTGATGAGA
CCATTCACGGCGCCCCTGTTCTGCAAAGACCTGTAGGTGGTGCTTCTGCG
ATAGCAAAGTCGCTGGTCGAGGCTATAGAAAACCATGATGGGATAGTGCA
AACAAGAACTCATGTAAGTCGCGTCATGATCGAAGAAGGTCGAGCAGTTG
GGGTGCAACTGAAAAACGGTCGGATCATCCGAGCCAATAGAGCTGTCATT
TCGAATGTCTCTGCTCTTGATGTGAACAAGTTGCTGCCGGATTGGAACAC
AAATGATAAGAACTATCAAACTGAACAAAGTGGTCGCGAAATGTGTCCAT
CCTTCATGCACCTTCACGTTGCACTCAAACTTACGGATGATATCCGATCT
CGCCTACCCCAAGGCAATCTGGAGCCGAACTATGTCAGCGTAGAAGACTG
GGGTCTTGGCATGGAGCATCCTGATAATGTGGTTCTGATTAGTGTGCCGT
CCGTGCTGGATCAGGATATGTGCCCAGTTGGTCACGCGGTGCTACATGCT
TACACACCAGCCACGGAACCATATGAAAAGTGGCGGGACCTAGAACCCGG
TACAACAGAATACAATGAATACAAAGAGAAGCGGTCTCGAATCTTGTGGA
AAGCAATTAATCGCATCTTCGGCGTTGATGTCCGTCCAAATGCGTACGTT
TCGCTTGTAGGTACTCCGCGAACTCATGCTCGCTTTCTTCGTCGACGATA
CGGGTCATATGGCCCAAAGGTTGATGCAAATTTGAGAGGTTTGGGTCTTC
CATTTCCGGGCAGTGGGGATTACCCGAAAGGATTTTGCTGTGTTGGTGAT
GGTGTGTTTCCAGGTGTGGGTGTCCCTGCTGTAGCTGGAAGCGCATGGAT
TGTGGCAAATGGAATAGTGAGTGTTGGGGAACAAGTTGAACTGCTAAAGA
AGATAGGATTATGA

Coding sequence (CDS) from alignment at tig00000017_pilon:152639..154402+

>Gchil831.t1 ID=Gchil831.t1|Name=Gchil831.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1764bp|location=Sequence derived from alignment at tig00000017_pilon:152639..154402+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCATACGCATTTAGCTCTTCTTTCACGGGACTAAGAGTTTTTGA
CAGACAAATCACAGGCGGACTGTCACAGGGGTATTCTACGCAACGACGGT
CAACTGGAGGCAACCGTTGCAAGCTTCTCATTCGAAGCTCCTCGTCGAAT
GAAAGCTACGATGTTATTACAATCGGCTCGGGACTAGGTGGTCTTTGCGC
CTCAGCATTGCTTTCTACGTACAATCTACGCACACTCACTCTCGAGTCAC
ATACTGAGCTGGGTGGAGCAGCCCACTCTTTCTCAAGAACAACGCCGTAC
GGCACCGTGACATTTGAATCAGGACCTCATCTCTTCTCAGGTCTTCAGTT
TCCTTCGGACAACCCCATGTACCATGTTTTGCGCGCAGTTGATGCAAAGC
TTGACGTCACTGGCTACGACGCCTGGGGAGTGTTCCTCCCGGACTCGTAC
GTCCGAACAACGCTCAGAGCACGAGAACCGCTTTTTGAGGAACTCCTAAA
CGTAGCTGGAGGTCCAACCGCTCGGGCTGAAATGGAGAATCTTACGAAGG
TTTTGCGGCCATTGGGGGTGGCTGCAACTCTTTTGCCACCAGCAGCATTA
AGGGCTTCAGACATTATTGGTTCTGTTCGAGTTGCTGCTCGATACGCATT
TTCTCCAAGCTCCCTCTCACATATAACAAGAATACCGCAACTGTCTCAAC
CATTTTCAACAATTCTTGATCGCTATGTGTCTGACAGATTCTCTCGCAAT
TTTCTTAACCTCTTGTGTTTCTTGCTAGCCGGCGCAACAGCAGAACGGGT
TCCAGTCGCTGAGGTAGCCTTCATGTTCCGTGAATGGCTTGGTGATGAGA
CCATTCACGGCGCCCCTGTTCTGCAAAGACCTGTAGGTGGTGCTTCTGCG
ATAGCAAAGTCGCTGGTCGAGGCTATAGAAAACCATGATGGGATAGTGCA
AACAAGAACTCATGTAAGTCGCGTCATGATCGAAGAAGGTCGAGCAGTTG
GGGTGCAACTGAAAAACGGTCGGATCATCCGAGCCAATAGAGCTGTCATT
TCGAATGTCTCTGCTCTTGATGTGAACAAGTTGCTGCCGGATTGGAACAC
AAATGATAAGAACTATCAAACTGAACAAAGTGGTCGCGAAATGTGTCCAT
CCTTCATGCACCTTCACGTTGCACTCAAACTTACGGATGATATCCGATCT
CGCCTACCCCAAGGCAATCTGGAGCCGAACTATGTCAGCGTAGAAGACTG
GGGTCTTGGCATGGAGCATCCTGATAATGTGGTTCTGATTAGTGTGCCGT
CCGTGCTGGATCAGGATATGTGCCCAGTTGGTCACGCGGTGCTACATGCT
TACACACCAGCCACGGAACCATATGAAAAGTGGCGGGACCTAGAACCCGG
TACAACAGAATACAATGAATACAAAGAGAAGCGGTCTCGAATCTTGTGGA
AAGCAATTAATCGCATCTTCGGCGTTGATGTCCGTCCAAATGCGTACGTT
TCGCTTGTAGGTACTCCGCGAACTCATGCTCGCTTTCTTCGTCGACGATA
CGGGTCATATGGCCCAAAGGTTGATGCAAATTTGAGAGGTTTGGGTCTTC
CATTTCCGGGCAGTGGGGATTACCCGAAAGGATTTTGCTGTGTTGGTGAT
GGTGTGTTTCCAGGTGTGGGTGTCCCTGCTGTAGCTGGAAGCGCATGGAT
TGTGGCAAATGGAATAGTGAGTGTTGGGGAACAAGTTGAACTGCTAAAGA
AGATAGGATTATGA