Gchil8309.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8309.t1
Unique Name	Gchil8309.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	475

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:1478894..1480318 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_05695T0
Preferred name	DCP2
PFAMs	DCP2,NUDIX
Max annot lvl	4751\|Fungi
KEGG rclass	RC00002
KEGG ko	ko:K12613,ko:K22073
KEGG Reaction	R10815
KEGG Pathway	ko03018,map03018
KEGG Module	M00395
GOs	GO:0000166,GO:0000287,GO:0000288,GO:0000290,GO:0000291,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005845,GO:0006139,GO:0006355,GO:0006357,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0019219,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030554,GO:0031086,GO:0031087,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034063,GO:0034428,GO:0034518,GO:0034622,GO:0034641,GO:0034655,GO:0035639,GO:0035770,GO:0036094,GO:0036464,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046872,GO:0048518,GO:0048519,GO:0048522,GO:0050072,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0060260,GO:0060261,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0098552,GO:0098562,GO:0098745,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000142,GO:2000144,GO:2001141
Evalue	1.54e-61
EggNOG OGs	COG0494@1\|root,KOG2937@2759\|Eukaryota,38CUB@33154\|Opisthokonta,3NYHF@4751\|Fungi
EC	3.6.1.62
Description	Decapping Enzyme
COG category	A
BRITE	ko00000,ko00001,ko00002,ko01000,ko03019,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8309	Gchil8309	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 1478894..1480318 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8309.t1.start1	Gchil8309.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 1478894..1478896 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8309.t1.CDS1	Gchil8309.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 1478894..1480318 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8309.t1.exon1	Gchil8309.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 1478894..1480318 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8309.t1.stop1	Gchil8309.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 1480316..1480318 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8309.t1	Gchil8309.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 1478894..1480318 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:1478894..1480318+
coding sequence from alignment at tig00004384_pilon:1478894..1480318+

mRNA sequence

>Gchil8309.t1 ID=Gchil8309.t1|Name=Gchil8309.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=475bp
MSASKNPATSSELLEVLDDLCMRFLVNLPAVEYESFERLFFAIESAHWFY
DDFYRDDNPSLPRLPLKHFAARLFDHTSLLKQYRNDVDRLFAQFQSYKQE
VPTCGAALLNPRMDKVLLVRGWGPTARWGFPKGKLAKDETELDAAVREVR
EETGFDMSPYVNKSTEYLDSLSSGRPCRIFIVTNIPEDTKFETQTRKEIS
DIEWVSILTLPDSPKAAKALNKQTEAETKTSSRREKKKLFSQNGVAAFTK
RLKAWISRRQKAIRDMSKSMPNLDVHLSNGSELAAPRRKAQENNKPIVES
GGGNQNCKEPIADGNCQKKKTPPKRKTTKSKTNQSSETRGNSRKARKDAA
LHEALRNMATFGTIGGTTLSDSERKHLFHRYVLETDRIAAEKGLKDEFWP
VPYVTSKDFTEEELREAQAVQNSAKKLFCDLDELHRGSTRASIINDLVKK
ARPTETFTFNRDAIRAAMRAKSPP*

spliced messenger RNA

>Gchil8309.t1 ID=Gchil8309.t1|Name=Gchil8309.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00004384_pilon:1478894..1480318+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTCGAAGAATCCCGCCACGTCGTCCGAGCTGCTAGAGGTGTT
GGACGATTTGTGCATGCGATTCCTGGTGAACCTTCCTGCCGTCGAATACG
AGTCGTTTGAGCGCCTATTTTTCGCAATTGAATCAGCTCACTGGTTTTAC
GATGACTTTTACCGCGATGACAATCCTTCACTGCCACGTTTGCCGCTTAA
GCATTTTGCCGCTAGACTTTTTGACCACACCTCGTTGCTAAAGCAGTATC
GAAATGATGTCGACCGCCTTTTTGCTCAATTTCAGTCGTATAAGCAAGAG
GTTCCTACATGCGGCGCCGCATTACTCAACCCACGGATGGACAAGGTTTT
GCTGGTGCGTGGATGGGGACCCACTGCACGCTGGGGGTTTCCAAAAGGTA
AACTAGCGAAGGACGAAACAGAATTGGATGCGGCCGTGCGCGAAGTGCGT
GAGGAGACTGGCTTCGATATGTCACCGTATGTCAATAAAAGCACAGAGTA
CCTGGACTCCCTATCCAGCGGCAGGCCGTGCCGAATCTTTATCGTCACGA
ATATCCCAGAGGACACAAAGTTCGAAACGCAAACCAGAAAAGAAATATCT
GACATTGAATGGGTTTCGATATTGACGCTTCCCGATTCCCCAAAGGCTGC
CAAGGCACTCAACAAGCAAACTGAGGCTGAGACAAAGACATCGTCTCGTC
GAGAAAAGAAAAAACTCTTTTCCCAAAATGGAGTTGCCGCATTTACTAAG
CGACTGAAGGCATGGATATCGCGACGACAGAAAGCAATCAGAGACATGTC
CAAGTCTATGCCTAATCTTGACGTACACCTTTCCAATGGCAGCGAGCTTG
CAGCCCCGCGACGAAAAGCACAGGAGAACAACAAACCTATAGTCGAAAGC
GGGGGCGGGAATCAAAACTGCAAAGAGCCAATAGCGGATGGTAATTGTCA
GAAGAAGAAAACACCGCCGAAACGAAAAACGACGAAGTCAAAAACAAACC
AATCCTCTGAAACCAGAGGGAATAGTAGAAAAGCTCGCAAAGACGCTGCC
TTACATGAAGCCCTTCGGAATATGGCCACATTTGGCACGATAGGCGGGAC
TACGCTCAGCGATTCAGAGCGAAAGCATTTGTTTCATCGCTATGTTCTTG
AAACTGATCGAATTGCGGCTGAGAAGGGTTTAAAGGATGAGTTCTGGCCG
GTACCCTATGTTACGAGCAAAGACTTTACCGAGGAAGAGCTGCGTGAGGC
CCAGGCCGTGCAGAACTCCGCCAAGAAGCTGTTTTGCGATCTCGACGAAT
TGCACCGAGGTTCCACACGTGCCTCCATCATTAATGATCTTGTTAAGAAA
GCGCGGCCAACGGAGACGTTCACGTTCAATAGGGATGCGATTCGAGCGGC
CATGCGCGCGAAAAGCCCCCCTTGA

protein sequence of Gchil8309.t1

>Gchil8309.t1 ID=Gchil8309.t1|Name=Gchil8309.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=475bp
MSASKNPATSSELLEVLDDLCMRFLVNLPAVEYESFERLFFAIESAHWFY
DDFYRDDNPSLPRLPLKHFAARLFDHTSLLKQYRNDVDRLFAQFQSYKQE
VPTCGAALLNPRMDKVLLVRGWGPTARWGFPKGKLAKDETELDAAVREVR
EETGFDMSPYVNKSTEYLDSLSSGRPCRIFIVTNIPEDTKFETQTRKEIS
DIEWVSILTLPDSPKAAKALNKQTEAETKTSSRREKKKLFSQNGVAAFTK
RLKAWISRRQKAIRDMSKSMPNLDVHLSNGSELAAPRRKAQENNKPIVES
GGGNQNCKEPIADGNCQKKKTPPKRKTTKSKTNQSSETRGNSRKARKDAA
LHEALRNMATFGTIGGTTLSDSERKHLFHRYVLETDRIAAEKGLKDEFWP
VPYVTSKDFTEEELREAQAVQNSAKKLFCDLDELHRGSTRASIINDLVKK
ARPTETFTFNRDAIRAAMRAKSPP*

mRNA from alignment at tig00004384_pilon:1478894..1480318+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8309.t1 ID=Gchil8309.t1|Name=Gchil8309.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00004384_pilon:1478894..1480318+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCCTCGAAGAATCCCGCCACGTCGTCCGAGCTGCTAGAGGTGTT
GGACGATTTGTGCATGCGATTCCTGGTGAACCTTCCTGCCGTCGAATACG
AGTCGTTTGAGCGCCTATTTTTCGCAATTGAATCAGCTCACTGGTTTTAC
GATGACTTTTACCGCGATGACAATCCTTCACTGCCACGTTTGCCGCTTAA
GCATTTTGCCGCTAGACTTTTTGACCACACCTCGTTGCTAAAGCAGTATC
GAAATGATGTCGACCGCCTTTTTGCTCAATTTCAGTCGTATAAGCAAGAG
GTTCCTACATGCGGCGCCGCATTACTCAACCCACGGATGGACAAGGTTTT
GCTGGTGCGTGGATGGGGACCCACTGCACGCTGGGGGTTTCCAAAAGGTA
AACTAGCGAAGGACGAAACAGAATTGGATGCGGCCGTGCGCGAAGTGCGT
GAGGAGACTGGCTTCGATATGTCACCGTATGTCAATAAAAGCACAGAGTA
CCTGGACTCCCTATCCAGCGGCAGGCCGTGCCGAATCTTTATCGTCACGA
ATATCCCAGAGGACACAAAGTTCGAAACGCAAACCAGAAAAGAAATATCT
GACATTGAATGGGTTTCGATATTGACGCTTCCCGATTCCCCAAAGGCTGC
CAAGGCACTCAACAAGCAAACTGAGGCTGAGACAAAGACATCGTCTCGTC
GAGAAAAGAAAAAACTCTTTTCCCAAAATGGAGTTGCCGCATTTACTAAG
CGACTGAAGGCATGGATATCGCGACGACAGAAAGCAATCAGAGACATGTC
CAAGTCTATGCCTAATCTTGACGTACACCTTTCCAATGGCAGCGAGCTTG
CAGCCCCGCGACGAAAAGCACAGGAGAACAACAAACCTATAGTCGAAAGC
GGGGGCGGGAATCAAAACTGCAAAGAGCCAATAGCGGATGGTAATTGTCA
GAAGAAGAAAACACCGCCGAAACGAAAAACGACGAAGTCAAAAACAAACC
AATCCTCTGAAACCAGAGGGAATAGTAGAAAAGCTCGCAAAGACGCTGCC
TTACATGAAGCCCTTCGGAATATGGCCACATTTGGCACGATAGGCGGGAC
TACGCTCAGCGATTCAGAGCGAAAGCATTTGTTTCATCGCTATGTTCTTG
AAACTGATCGAATTGCGGCTGAGAAGGGTTTAAAGGATGAGTTCTGGCCG
GTACCCTATGTTACGAGCAAAGACTTTACCGAGGAAGAGCTGCGTGAGGC
CCAGGCCGTGCAGAACTCCGCCAAGAAGCTGTTTTGCGATCTCGACGAAT
TGCACCGAGGTTCCACACGTGCCTCCATCATTAATGATCTTGTTAAGAAA
GCGCGGCCAACGGAGACGTTCACGTTCAATAGGGATGCGATTCGAGCGGC
CATGCGCGCGAAAAGCCCCCCTTGA

Coding sequence (CDS) from alignment at tig00004384_pilon:1478894..1480318+

>Gchil8309.t1 ID=Gchil8309.t1|Name=Gchil8309.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00004384_pilon:1478894..1480318+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGCCTCGAAGAATCCCGCCACGTCGTCCGAGCTGCTAGAGGTGTT
GGACGATTTGTGCATGCGATTCCTGGTGAACCTTCCTGCCGTCGAATACG
AGTCGTTTGAGCGCCTATTTTTCGCAATTGAATCAGCTCACTGGTTTTAC
GATGACTTTTACCGCGATGACAATCCTTCACTGCCACGTTTGCCGCTTAA
GCATTTTGCCGCTAGACTTTTTGACCACACCTCGTTGCTAAAGCAGTATC
GAAATGATGTCGACCGCCTTTTTGCTCAATTTCAGTCGTATAAGCAAGAG
GTTCCTACATGCGGCGCCGCATTACTCAACCCACGGATGGACAAGGTTTT
GCTGGTGCGTGGATGGGGACCCACTGCACGCTGGGGGTTTCCAAAAGGTA
AACTAGCGAAGGACGAAACAGAATTGGATGCGGCCGTGCGCGAAGTGCGT
GAGGAGACTGGCTTCGATATGTCACCGTATGTCAATAAAAGCACAGAGTA
CCTGGACTCCCTATCCAGCGGCAGGCCGTGCCGAATCTTTATCGTCACGA
ATATCCCAGAGGACACAAAGTTCGAAACGCAAACCAGAAAAGAAATATCT
GACATTGAATGGGTTTCGATATTGACGCTTCCCGATTCCCCAAAGGCTGC
CAAGGCACTCAACAAGCAAACTGAGGCTGAGACAAAGACATCGTCTCGTC
GAGAAAAGAAAAAACTCTTTTCCCAAAATGGAGTTGCCGCATTTACTAAG
CGACTGAAGGCATGGATATCGCGACGACAGAAAGCAATCAGAGACATGTC
CAAGTCTATGCCTAATCTTGACGTACACCTTTCCAATGGCAGCGAGCTTG
CAGCCCCGCGACGAAAAGCACAGGAGAACAACAAACCTATAGTCGAAAGC
GGGGGCGGGAATCAAAACTGCAAAGAGCCAATAGCGGATGGTAATTGTCA
GAAGAAGAAAACACCGCCGAAACGAAAAACGACGAAGTCAAAAACAAACC
AATCCTCTGAAACCAGAGGGAATAGTAGAAAAGCTCGCAAAGACGCTGCC
TTACATGAAGCCCTTCGGAATATGGCCACATTTGGCACGATAGGCGGGAC
TACGCTCAGCGATTCAGAGCGAAAGCATTTGTTTCATCGCTATGTTCTTG
AAACTGATCGAATTGCGGCTGAGAAGGGTTTAAAGGATGAGTTCTGGCCG
GTACCCTATGTTACGAGCAAAGACTTTACCGAGGAAGAGCTGCGTGAGGC
CCAGGCCGTGCAGAACTCCGCCAAGAAGCTGTTTTGCGATCTCGACGAAT
TGCACCGAGGTTCCACACGTGCCTCCATCATTAATGATCTTGTTAAGAAA
GCGCGGCCAACGGAGACGTTCACGTTCAATAGGGATGCGATTCGAGCGGC
CATGCGCGCGAAAAGCCCCCCTTGA