Gchil8303.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8303.t1
Unique NameGchil8303.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1410965..1411536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog936053.I1BQI5
Preferred namerpl22
PFAMsRibosomal_L22e
Max annot lvl4751|Fungi
KEGG koko:K02891
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.51e-40
EggNOG OGsKOG3434@1|root,KOG3434@2759|Eukaryota,3A5RD@33154|Opisthokonta,3P2WB@4751|Fungi,1GTUU@112252|Fungi incertae sedis
DescriptionRibosomal L22e protein family
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8303Gchil8303Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1410965..1411536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8303.t1Gchil8303.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1410965..1411536 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8303.t1.start1Gchil8303.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1410965..1410967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8303.t1.CDS1Gchil8303.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1410965..1410985 +
Gchil8303.t1.CDS2Gchil8303.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1411074..1411160 +
Gchil8303.t1.CDS3Gchil8303.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1411267..1411536 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8303.t1.exon1Gchil8303.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1410965..1410985 +
Gchil8303.t1.exon2Gchil8303.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1411074..1411160 +
Gchil8303.t1.exon3Gchil8303.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1411267..1411536 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8303.t1.intron1Gchil8303.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1410986..1411073 +
Gchil8303.t1.intron2Gchil8303.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1411161..1411266 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8303.t1.stop1Gchil8303.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1411534..1411536 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8303.t1 ID=Gchil8303.t1|Name=Gchil8303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=126bp
MSPAVASKSKPGKVGGKYVIDCSAPCEDKIMDASVFEKFLNERIKVNNKT
NQLAGAVKVSRDKNRITVEANIKFSKRYLKYLTKKFLKKQNLRDWMRVVA
SDKNTYQLRYFNISEDLDEDESDDE*
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spliced messenger RNA

>Gchil8303.t1 ID=Gchil8303.t1|Name=Gchil8303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00004384_pilon:1410965..1411536+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCCGCAGTTGCATCGAAATCCAAGCCTGGAAAGGTCGGCGGAAA
ATATGTCATCGATTGTTCCGCTCCTTGTGAAGACAAGATCATGGACGCTA
GCGTTTTTGAAAAGTTTTTGAACGAACGAATTAAGGTGAATAACAAGACA
AACCAATTGGCGGGTGCCGTCAAGGTGTCACGCGACAAGAACCGTATCAC
GGTGGAGGCCAACATCAAGTTCTCCAAGAGATATTTGAAATACCTCACCA
AAAAGTTCTTGAAGAAGCAAAACTTGAGAGATTGGATGCGCGTCGTCGCG
TCGGACAAGAATACCTACCAATTGCGCTACTTCAACATCAGCGAAGATCT
GGATGAGGATGAGTCCGACGACGAGTAA
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protein sequence of Gchil8303.t1

>Gchil8303.t1 ID=Gchil8303.t1|Name=Gchil8303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=126bp
MSPAVASKSKPGKVGGKYVIDCSAPCEDKIMDASVFEKFLNERIKVNNKT
NQLAGAVKVSRDKNRITVEANIKFSKRYLKYLTKKFLKKQNLRDWMRVVA
SDKNTYQLRYFNISEDLDEDESDDE*
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mRNA from alignment at tig00004384_pilon:1410965..1411536+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8303.t1 ID=Gchil8303.t1|Name=Gchil8303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=572bp|location=Sequence derived from alignment at tig00004384_pilon:1410965..1411536+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCCGCAGTTGCATCGGTAAGCGCTACCTTTTTGAGAAAGAACCC
TCCTCCCGCGTCCGTGTGCGATCGCGCTGCTGACCATTTGTTTCATTGCT
GTTGCGCAGAAATCCAAGCCTGGAAAGGTCGGCGGAAAATATGTCATCGA
TTGTTCCGCTCCTTGTGAAGACAAGATCATGGACGCTAGCGTTTTTGTAT
GTTGTTGAAATCGAACGAGCTCCGCGTGTTGCACCCAGACAGAATGGCTA
ACCATGCGTCTCTGCTCTGTGAACCACGTCTTGCGCTGTGCGTGCGACGC
AGGAAAAGTTTTTGAACGAACGAATTAAGGTGAATAACAAGACAAACCAA
TTGGCGGGTGCCGTCAAGGTGTCACGCGACAAGAACCGTATCACGGTGGA
GGCCAACATCAAGTTCTCCAAGAGATATTTGAAATACCTCACCAAAAAGT
TCTTGAAGAAGCAAAACTTGAGAGATTGGATGCGCGTCGTCGCGTCGGAC
AAGAATACCTACCAATTGCGCTACTTCAACATCAGCGAAGATCTGGATGA
GGATGAGTCCGACGACGAGTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:1410965..1411536+

>Gchil8303.t1 ID=Gchil8303.t1|Name=Gchil8303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=378bp|location=Sequence derived from alignment at tig00004384_pilon:1410965..1411536+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCCGCAGTTGCATCGAAATCCAAGCCTGGAAAGGTCGGCGGAAA
ATATGTCATCGATTGTTCCGCTCCTTGTGAAGACAAGATCATGGACGCTA
GCGTTTTTGAAAAGTTTTTGAACGAACGAATTAAGGTGAATAACAAGACA
AACCAATTGGCGGGTGCCGTCAAGGTGTCACGCGACAAGAACCGTATCAC
GGTGGAGGCCAACATCAAGTTCTCCAAGAGATATTTGAAATACCTCACCA
AAAAGTTCTTGAAGAAGCAAAACTTGAGAGATTGGATGCGCGTCGTCGCG
TCGGACAAGAATACCTACCAATTGCGCTACTTCAACATCAGCGAAGATCT
GGATGAGGATGAGTCCGACGACGAGTAA
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