Gchil8302.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8302.t1
Unique NameGchil8302.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1408514..1409743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1054860.KB913030_gene2899
PFAMsInhibitor_I9,P_proprotein,Peptidase_S8
Max annot lvl201174|Actinobacteria
Evalue6.42e-39
EggNOG OGsCOG1404@1|root,COG1404@2|Bacteria,2GJYH@201174|Actinobacteria
DescriptionBelongs to the peptidase S8 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8302Gchil8302Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1408514..1409743 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8302.t1.start1Gchil8302.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1408514..1408516 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8302.t1.CDS1Gchil8302.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1408514..1409743 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8302.t1.exon1Gchil8302.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1408514..1409743 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8302.t1.stop1Gchil8302.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1409741..1409743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8302.t1Gchil8302.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1408514..1409743 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8302.t1 ID=Gchil8302.t1|Name=Gchil8302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=410bp
MRLPTTLFSILLLAQLLFTASLVCAQKPGDPIPGAFILQLFGTCNGRCRG
ELQSALASSPETPGCTFMSAGIPIGTLDYETIQCPPGGKTTANALFAALA
SQLQGQADAVLQRVEEDGVVSFAAASTALWGVDEADGGVSRDDGGEPVRD
SSRTCSMSSNNGEGVTVWILDSGCEPTLNGKCVGFAGGKLSERCRDGNGH
GTHVGGTATDETFGVAPRATRACVKVLNNKGSGSWSDVIGAISFVTQNSG
EGANGDVINMSLGGPRTESVNDAVEAAAAAGVYFSLSAGNSAANACTASP
ASATGAKVFTVAAHNIALQSASFSNFGTSADNCVQLSAPGVDIESTKVRG
GSVLYSGTSMAAPHVAGACALLLSDGLVPTVDRLTAGGVAISRESALDQF
SLGVTTCLA*
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spliced messenger RNA

>Gchil8302.t1 ID=Gchil8302.t1|Name=Gchil8302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00004384_pilon:1408514..1409743+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGTTGCCCACTACCTTGTTCAGCATACTTCTGCTAGCACAGCTGCT
ATTCACTGCCTCACTCGTGTGCGCACAAAAGCCAGGCGACCCCATCCCGG
GTGCTTTCATTTTGCAATTGTTTGGCACGTGCAACGGCCGATGTCGTGGC
GAGCTCCAATCGGCCTTGGCCTCCTCGCCTGAAACGCCAGGCTGCACATT
TATGTCCGCAGGCATTCCCATAGGCACGTTGGACTATGAAACGATCCAAT
GCCCTCCCGGTGGCAAGACTACAGCCAACGCGCTCTTCGCGGCACTCGCC
TCACAGCTTCAAGGGCAGGCAGATGCCGTCCTGCAGCGCGTGGAAGAGGA
CGGGGTGGTGTCGTTTGCGGCGGCATCAACGGCACTGTGGGGCGTGGACG
AAGCTGACGGGGGGGTGAGTCGGGACGACGGCGGCGAACCCGTGCGAGAT
TCATCTCGCACGTGCAGTATGAGCAGCAACAACGGCGAAGGCGTGACCGT
TTGGATCCTGGACTCGGGTTGCGAGCCAACGCTGAACGGGAAGTGTGTAG
GCTTTGCCGGCGGCAAGCTGTCGGAGCGCTGTCGCGATGGAAATGGACAT
GGCACACATGTGGGAGGCACTGCGACGGACGAAACGTTCGGCGTTGCGCC
ACGCGCTACGCGCGCATGCGTTAAGGTGCTTAACAACAAGGGGTCTGGAA
GTTGGTCAGACGTGATCGGAGCCATCTCCTTCGTCACGCAGAACAGCGGC
GAAGGCGCAAATGGCGACGTGATCAACATGTCATTGGGCGGGCCGCGCAC
CGAGTCCGTCAATGACGCGGTGGAGGCGGCCGCCGCCGCAGGTGTGTACT
TTTCGCTGTCAGCGGGTAATTCGGCAGCCAATGCGTGCACCGCATCGCCG
GCGTCAGCGACGGGTGCGAAGGTATTCACGGTGGCCGCACATAACATTGC
ATTGCAGTCAGCGAGCTTCAGCAACTTTGGCACGTCGGCGGACAATTGCG
TGCAGCTGTCGGCGCCCGGTGTGGATATTGAGTCTACTAAGGTGCGCGGG
GGGAGCGTCCTGTACTCGGGCACTTCGATGGCGGCGCCGCATGTGGCGGG
CGCGTGCGCGCTGCTGTTATCGGACGGGTTGGTGCCGACGGTGGATCGGC
TGACGGCGGGAGGTGTGGCCATCAGCCGCGAGAGCGCGCTGGATCAGTTT
TCGCTGGGCGTCACGACCTGCTTGGCTTGA
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protein sequence of Gchil8302.t1

>Gchil8302.t1 ID=Gchil8302.t1|Name=Gchil8302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=410bp
MRLPTTLFSILLLAQLLFTASLVCAQKPGDPIPGAFILQLFGTCNGRCRG
ELQSALASSPETPGCTFMSAGIPIGTLDYETIQCPPGGKTTANALFAALA
SQLQGQADAVLQRVEEDGVVSFAAASTALWGVDEADGGVSRDDGGEPVRD
SSRTCSMSSNNGEGVTVWILDSGCEPTLNGKCVGFAGGKLSERCRDGNGH
GTHVGGTATDETFGVAPRATRACVKVLNNKGSGSWSDVIGAISFVTQNSG
EGANGDVINMSLGGPRTESVNDAVEAAAAAGVYFSLSAGNSAANACTASP
ASATGAKVFTVAAHNIALQSASFSNFGTSADNCVQLSAPGVDIESTKVRG
GSVLYSGTSMAAPHVAGACALLLSDGLVPTVDRLTAGGVAISRESALDQF
SLGVTTCLA*
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mRNA from alignment at tig00004384_pilon:1408514..1409743+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8302.t1 ID=Gchil8302.t1|Name=Gchil8302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00004384_pilon:1408514..1409743+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGTTGCCCACTACCTTGTTCAGCATACTTCTGCTAGCACAGCTGCT
ATTCACTGCCTCACTCGTGTGCGCACAAAAGCCAGGCGACCCCATCCCGG
GTGCTTTCATTTTGCAATTGTTTGGCACGTGCAACGGCCGATGTCGTGGC
GAGCTCCAATCGGCCTTGGCCTCCTCGCCTGAAACGCCAGGCTGCACATT
TATGTCCGCAGGCATTCCCATAGGCACGTTGGACTATGAAACGATCCAAT
GCCCTCCCGGTGGCAAGACTACAGCCAACGCGCTCTTCGCGGCACTCGCC
TCACAGCTTCAAGGGCAGGCAGATGCCGTCCTGCAGCGCGTGGAAGAGGA
CGGGGTGGTGTCGTTTGCGGCGGCATCAACGGCACTGTGGGGCGTGGACG
AAGCTGACGGGGGGGTGAGTCGGGACGACGGCGGCGAACCCGTGCGAGAT
TCATCTCGCACGTGCAGTATGAGCAGCAACAACGGCGAAGGCGTGACCGT
TTGGATCCTGGACTCGGGTTGCGAGCCAACGCTGAACGGGAAGTGTGTAG
GCTTTGCCGGCGGCAAGCTGTCGGAGCGCTGTCGCGATGGAAATGGACAT
GGCACACATGTGGGAGGCACTGCGACGGACGAAACGTTCGGCGTTGCGCC
ACGCGCTACGCGCGCATGCGTTAAGGTGCTTAACAACAAGGGGTCTGGAA
GTTGGTCAGACGTGATCGGAGCCATCTCCTTCGTCACGCAGAACAGCGGC
GAAGGCGCAAATGGCGACGTGATCAACATGTCATTGGGCGGGCCGCGCAC
CGAGTCCGTCAATGACGCGGTGGAGGCGGCCGCCGCCGCAGGTGTGTACT
TTTCGCTGTCAGCGGGTAATTCGGCAGCCAATGCGTGCACCGCATCGCCG
GCGTCAGCGACGGGTGCGAAGGTATTCACGGTGGCCGCACATAACATTGC
ATTGCAGTCAGCGAGCTTCAGCAACTTTGGCACGTCGGCGGACAATTGCG
TGCAGCTGTCGGCGCCCGGTGTGGATATTGAGTCTACTAAGGTGCGCGGG
GGGAGCGTCCTGTACTCGGGCACTTCGATGGCGGCGCCGCATGTGGCGGG
CGCGTGCGCGCTGCTGTTATCGGACGGGTTGGTGCCGACGGTGGATCGGC
TGACGGCGGGAGGTGTGGCCATCAGCCGCGAGAGCGCGCTGGATCAGTTT
TCGCTGGGCGTCACGACCTGCTTGGCTTGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:1408514..1409743+

>Gchil8302.t1 ID=Gchil8302.t1|Name=Gchil8302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00004384_pilon:1408514..1409743+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGGTTGCCCACTACCTTGTTCAGCATACTTCTGCTAGCACAGCTGCT
ATTCACTGCCTCACTCGTGTGCGCACAAAAGCCAGGCGACCCCATCCCGG
GTGCTTTCATTTTGCAATTGTTTGGCACGTGCAACGGCCGATGTCGTGGC
GAGCTCCAATCGGCCTTGGCCTCCTCGCCTGAAACGCCAGGCTGCACATT
TATGTCCGCAGGCATTCCCATAGGCACGTTGGACTATGAAACGATCCAAT
GCCCTCCCGGTGGCAAGACTACAGCCAACGCGCTCTTCGCGGCACTCGCC
TCACAGCTTCAAGGGCAGGCAGATGCCGTCCTGCAGCGCGTGGAAGAGGA
CGGGGTGGTGTCGTTTGCGGCGGCATCAACGGCACTGTGGGGCGTGGACG
AAGCTGACGGGGGGGTGAGTCGGGACGACGGCGGCGAACCCGTGCGAGAT
TCATCTCGCACGTGCAGTATGAGCAGCAACAACGGCGAAGGCGTGACCGT
TTGGATCCTGGACTCGGGTTGCGAGCCAACGCTGAACGGGAAGTGTGTAG
GCTTTGCCGGCGGCAAGCTGTCGGAGCGCTGTCGCGATGGAAATGGACAT
GGCACACATGTGGGAGGCACTGCGACGGACGAAACGTTCGGCGTTGCGCC
ACGCGCTACGCGCGCATGCGTTAAGGTGCTTAACAACAAGGGGTCTGGAA
GTTGGTCAGACGTGATCGGAGCCATCTCCTTCGTCACGCAGAACAGCGGC
GAAGGCGCAAATGGCGACGTGATCAACATGTCATTGGGCGGGCCGCGCAC
CGAGTCCGTCAATGACGCGGTGGAGGCGGCCGCCGCCGCAGGTGTGTACT
TTTCGCTGTCAGCGGGTAATTCGGCAGCCAATGCGTGCACCGCATCGCCG
GCGTCAGCGACGGGTGCGAAGGTATTCACGGTGGCCGCACATAACATTGC
ATTGCAGTCAGCGAGCTTCAGCAACTTTGGCACGTCGGCGGACAATTGCG
TGCAGCTGTCGGCGCCCGGTGTGGATATTGAGTCTACTAAGGTGCGCGGG
GGGAGCGTCCTGTACTCGGGCACTTCGATGGCGGCGCCGCATGTGGCGGG
CGCGTGCGCGCTGCTGTTATCGGACGGGTTGGTGCCGACGGTGGATCGGC
TGACGGCGGGAGGTGTGGCCATCAGCCGCGAGAGCGCGCTGGATCAGTTT
TCGCTGGGCGTCACGACCTGCTTGGCTTGA
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