Gchil8301.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8301.t1
Unique Name	Gchil8301.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	400

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:1353264..1354463 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ36066
PFAMs	Nucleoside_tran
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K15014
KEGG TC	2.A.57.1
Evalue	4.11e-22
EggNOG OGs	KOG1479@1\|root,KOG1479@2759\|Eukaryota,37IDT@33090\|Viridiplantae,3G9YU@35493\|Streptophyta
Description	Equilibrative nucleotide transporter 3-like
COG category	F
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8301	Gchil8301	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 1353264..1354463 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8301.t1.stop1	Gchil8301.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 1353264..1353266 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8301.t1.CDS1	Gchil8301.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 1353264..1354463 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8301.t1.exon1	Gchil8301.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 1353264..1354463 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8301.t1.start1	Gchil8301.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 1354461..1354463 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8301.t1	Gchil8301.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 1353264..1354463 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:1353264..1354463-
coding sequence from alignment at tig00004384_pilon:1353264..1354463-

mRNA sequence

>Gchil8301.t1 ID=Gchil8301.t1|Name=Gchil8301.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=400bp
MDANEDSEVQIPLYSKPEFPNPQVSSQQFFATFFILGLGVLLPWNAMISS
LDYYATVHKDIPIAQYITNSYSAPLLVSGLLPLTGLAFQTTVSILVCFGW
LAAITTILPCVAHSVAATSVVVVFMGLCGGLLQSLLFGAMNYFPGGVATT
AFNAGCGAASAVIVTLRILTRLAMGGEDSAESMKTGVRLFFVVCTFLSIA
CLVVFHNLTKTREYEAVPKTSATQLTSAYDTLHDIAEPATCLFLCFFGTM
MLFPGILTQVPAQLRNDNVGSWFPLIAVASLAFGDTAGRLLWSRELVLYY
PQALTWMSCARLIVLPFHVLQWINGLPVTLMFAYGTVFFHGFLNGFIMNM
AFVNAPSMTSDNRLDTVGKLMFAMLISGIFVGSFAGWALDWLLRSFKLL*

spliced messenger RNA

>Gchil8301.t1 ID=Gchil8301.t1|Name=Gchil8301.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00004384_pilon:1353264..1354463- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCAACGAAGACTCAGAGGTTCAAATTCCCTTGTACTCTAAGCC
CGAGTTTCCGAACCCTCAAGTCTCCTCACAACAGTTCTTTGCCACCTTTT
TTATACTTGGATTGGGTGTTCTCTTACCATGGAATGCGATGATTTCATCC
TTAGACTACTACGCGACGGTTCACAAGGATATTCCTATAGCTCAATACAT
TACTAATTCTTACTCGGCACCCCTGTTGGTTTCTGGACTTCTTCCGCTCA
CAGGGTTGGCCTTTCAAACCACAGTTTCCATTCTCGTGTGTTTCGGTTGG
CTGGCAGCTATCACAACCATCCTCCCATGTGTTGCACACAGCGTGGCAGC
GACGTCCGTTGTCGTCGTTTTCATGGGGCTTTGCGGCGGTTTGTTGCAGA
GTTTGCTCTTTGGGGCAATGAATTATTTCCCGGGAGGCGTGGCAACCACC
GCCTTCAACGCGGGCTGCGGTGCCGCGAGTGCCGTCATAGTCACCTTGCG
CATTTTAACTCGGCTCGCGATGGGCGGCGAAGATAGTGCCGAGTCAATGA
AAACTGGGGTTCGATTATTCTTTGTTGTGTGCACCTTTCTTAGTATCGCA
TGTCTTGTTGTGTTTCACAACTTGACCAAGACGCGGGAATATGAAGCAGT
TCCAAAGACGTCTGCTACTCAACTTACTTCAGCTTACGATACGCTCCATG
ATATTGCGGAGCCCGCTACATGCCTGTTTCTTTGTTTCTTCGGAACGATG
ATGCTTTTCCCCGGCATTCTCACTCAGGTACCAGCACAACTTCGGAACGA
CAACGTGGGATCATGGTTTCCACTCATTGCAGTCGCCTCCCTAGCTTTTG
GAGATACTGCTGGACGATTACTTTGGTCTCGAGAGCTTGTTTTGTACTAT
CCGCAAGCGCTGACCTGGATGAGCTGTGCAAGATTGATTGTGCTTCCCTT
TCACGTACTGCAATGGATTAATGGATTGCCAGTCACCTTGATGTTCGCGT
ATGGTACCGTCTTTTTTCATGGGTTTCTCAACGGCTTTATCATGAACATG
GCCTTCGTAAACGCTCCTAGCATGACTTCTGATAATCGACTCGATACTGT
TGGTAAGCTAATGTTTGCCATGTTAATCTCGGGAATTTTTGTCGGTAGCT
TTGCTGGTTGGGCACTGGATTGGCTTTTGAGGTCCTTTAAGCTATTATAA

protein sequence of Gchil8301.t1

>Gchil8301.t1 ID=Gchil8301.t1|Name=Gchil8301.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=400bp
MDANEDSEVQIPLYSKPEFPNPQVSSQQFFATFFILGLGVLLPWNAMISS
LDYYATVHKDIPIAQYITNSYSAPLLVSGLLPLTGLAFQTTVSILVCFGW
LAAITTILPCVAHSVAATSVVVVFMGLCGGLLQSLLFGAMNYFPGGVATT
AFNAGCGAASAVIVTLRILTRLAMGGEDSAESMKTGVRLFFVVCTFLSIA
CLVVFHNLTKTREYEAVPKTSATQLTSAYDTLHDIAEPATCLFLCFFGTM
MLFPGILTQVPAQLRNDNVGSWFPLIAVASLAFGDTAGRLLWSRELVLYY
PQALTWMSCARLIVLPFHVLQWINGLPVTLMFAYGTVFFHGFLNGFIMNM
AFVNAPSMTSDNRLDTVGKLMFAMLISGIFVGSFAGWALDWLLRSFKLL*

mRNA from alignment at tig00004384_pilon:1353264..1354463-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8301.t1 ID=Gchil8301.t1|Name=Gchil8301.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00004384_pilon:1353264..1354463- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCCAACGAAGACTCAGAGGTTCAAATTCCCTTGTACTCTAAGCC
CGAGTTTCCGAACCCTCAAGTCTCCTCACAACAGTTCTTTGCCACCTTTT
TTATACTTGGATTGGGTGTTCTCTTACCATGGAATGCGATGATTTCATCC
TTAGACTACTACGCGACGGTTCACAAGGATATTCCTATAGCTCAATACAT
TACTAATTCTTACTCGGCACCCCTGTTGGTTTCTGGACTTCTTCCGCTCA
CAGGGTTGGCCTTTCAAACCACAGTTTCCATTCTCGTGTGTTTCGGTTGG
CTGGCAGCTATCACAACCATCCTCCCATGTGTTGCACACAGCGTGGCAGC
GACGTCCGTTGTCGTCGTTTTCATGGGGCTTTGCGGCGGTTTGTTGCAGA
GTTTGCTCTTTGGGGCAATGAATTATTTCCCGGGAGGCGTGGCAACCACC
GCCTTCAACGCGGGCTGCGGTGCCGCGAGTGCCGTCATAGTCACCTTGCG
CATTTTAACTCGGCTCGCGATGGGCGGCGAAGATAGTGCCGAGTCAATGA
AAACTGGGGTTCGATTATTCTTTGTTGTGTGCACCTTTCTTAGTATCGCA
TGTCTTGTTGTGTTTCACAACTTGACCAAGACGCGGGAATATGAAGCAGT
TCCAAAGACGTCTGCTACTCAACTTACTTCAGCTTACGATACGCTCCATG
ATATTGCGGAGCCCGCTACATGCCTGTTTCTTTGTTTCTTCGGAACGATG
ATGCTTTTCCCCGGCATTCTCACTCAGGTACCAGCACAACTTCGGAACGA
CAACGTGGGATCATGGTTTCCACTCATTGCAGTCGCCTCCCTAGCTTTTG
GAGATACTGCTGGACGATTACTTTGGTCTCGAGAGCTTGTTTTGTACTAT
CCGCAAGCGCTGACCTGGATGAGCTGTGCAAGATTGATTGTGCTTCCCTT
TCACGTACTGCAATGGATTAATGGATTGCCAGTCACCTTGATGTTCGCGT
ATGGTACCGTCTTTTTTCATGGGTTTCTCAACGGCTTTATCATGAACATG
GCCTTCGTAAACGCTCCTAGCATGACTTCTGATAATCGACTCGATACTGT
TGGTAAGCTAATGTTTGCCATGTTAATCTCGGGAATTTTTGTCGGTAGCT
TTGCTGGTTGGGCACTGGATTGGCTTTTGAGGTCCTTTAAGCTATTATAA

Coding sequence (CDS) from alignment at tig00004384_pilon:1353264..1354463-

>Gchil8301.t1 ID=Gchil8301.t1|Name=Gchil8301.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00004384_pilon:1353264..1354463- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGCCAACGAAGACTCAGAGGTTCAAATTCCCTTGTACTCTAAGCC
CGAGTTTCCGAACCCTCAAGTCTCCTCACAACAGTTCTTTGCCACCTTTT
TTATACTTGGATTGGGTGTTCTCTTACCATGGAATGCGATGATTTCATCC
TTAGACTACTACGCGACGGTTCACAAGGATATTCCTATAGCTCAATACAT
TACTAATTCTTACTCGGCACCCCTGTTGGTTTCTGGACTTCTTCCGCTCA
CAGGGTTGGCCTTTCAAACCACAGTTTCCATTCTCGTGTGTTTCGGTTGG
CTGGCAGCTATCACAACCATCCTCCCATGTGTTGCACACAGCGTGGCAGC
GACGTCCGTTGTCGTCGTTTTCATGGGGCTTTGCGGCGGTTTGTTGCAGA
GTTTGCTCTTTGGGGCAATGAATTATTTCCCGGGAGGCGTGGCAACCACC
GCCTTCAACGCGGGCTGCGGTGCCGCGAGTGCCGTCATAGTCACCTTGCG
CATTTTAACTCGGCTCGCGATGGGCGGCGAAGATAGTGCCGAGTCAATGA
AAACTGGGGTTCGATTATTCTTTGTTGTGTGCACCTTTCTTAGTATCGCA
TGTCTTGTTGTGTTTCACAACTTGACCAAGACGCGGGAATATGAAGCAGT
TCCAAAGACGTCTGCTACTCAACTTACTTCAGCTTACGATACGCTCCATG
ATATTGCGGAGCCCGCTACATGCCTGTTTCTTTGTTTCTTCGGAACGATG
ATGCTTTTCCCCGGCATTCTCACTCAGGTACCAGCACAACTTCGGAACGA
CAACGTGGGATCATGGTTTCCACTCATTGCAGTCGCCTCCCTAGCTTTTG
GAGATACTGCTGGACGATTACTTTGGTCTCGAGAGCTTGTTTTGTACTAT
CCGCAAGCGCTGACCTGGATGAGCTGTGCAAGATTGATTGTGCTTCCCTT
TCACGTACTGCAATGGATTAATGGATTGCCAGTCACCTTGATGTTCGCGT
ATGGTACCGTCTTTTTTCATGGGTTTCTCAACGGCTTTATCATGAACATG
GCCTTCGTAAACGCTCCTAGCATGACTTCTGATAATCGACTCGATACTGT
TGGTAAGCTAATGTTTGCCATGTTAATCTCGGGAATTTTTGTCGGTAGCT
TTGCTGGTTGGGCACTGGATTGGCTTTTGAGGTCCTTTAAGCTATTATAA