Gchil830.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil830.t1
Unique NameGchil830.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:151506..152348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1150469.RSPPHO_02653
Preferred namelpxC
PFAMsLpxC
Max annot lvl204441|Rhodospirillales
KEGG rclassRC00166,RC00300
KEGG koko:K02535
KEGG ReactionR04587
KEGG Pathwayko00540,ko01100,map00540,map01100
KEGG ModuleM00060
Evalue3.91e-47
EggNOG OGsCOG0774@1|root,COG0774@2|Bacteria,1MV6T@1224|Proteobacteria,2TUHH@28211|Alphaproteobacteria,2JPDC@204441|Rhodospirillales
EC3.5.1.108
DescriptionCatalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis
COG categoryM
BRITEko00000,ko00001,ko00002,ko01000,ko01005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil830Gchil830Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 151506..152348 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil830.t1.stop1Gchil830.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 151506..151508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil830.t1.CDS1Gchil830.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 151506..152348 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil830.t1.exon1Gchil830.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 151506..152348 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil830.t1.start1Gchil830.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 152346..152348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil830.t1Gchil830.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 151506..152348 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil830.t1 ID=Gchil830.t1|Name=Gchil830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=281bp
MRFVSKALHTGTPSELTLRPAPANAGITFHHRNDCIPATFENVADVTLCT
TLRAPSSSATTVSSVEHLLAALSAAGVDNVQAHTSSAELPIMDGSAWAFT
LALKGQVVPLNAAKRLTIVRRAVRVDSRDGKAHASLWPLPGVRSLDLEVM
TFVNGMSRSNLGTQRVAFTLSEGAFRRHVARARTFWSRSELERWRKKGLI
LGGGMDNSLLYEEGGKVLNSDGLRYSDEICRHLAVDCIGDLRLGGVVLGR
YTAVRPAHWLNVELLRKLYRDPENYVLEGD*
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spliced messenger RNA

>Gchil830.t1 ID=Gchil830.t1|Name=Gchil830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000017_pilon:151506..152348- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCGTGAGTAAAGCACTTCACACAGGCACACCATCCGAGCTGAC
GTTGCGCCCAGCTCCAGCAAACGCCGGCATCACCTTTCATCATCGCAATG
ACTGCATCCCCGCAACATTTGAAAACGTAGCGGATGTCACACTGTGCACT
ACCTTGCGCGCGCCATCTTCTTCCGCCACCACCGTTTCAAGCGTAGAACA
CTTGCTGGCTGCTCTATCGGCAGCTGGCGTGGATAACGTACAAGCGCACA
CCTCAAGCGCTGAATTGCCCATCATGGACGGGTCGGCGTGGGCGTTCACT
CTCGCTTTGAAGGGGCAGGTGGTGCCTTTGAACGCTGCAAAACGCTTGAC
GATTGTACGACGAGCGGTACGCGTTGATTCCAGAGATGGTAAAGCACACG
CCTCACTGTGGCCTCTGCCAGGCGTAAGGTCTCTTGACTTGGAGGTGATG
ACGTTTGTAAATGGCATGTCACGTTCAAACCTCGGTACTCAGAGAGTGGC
ATTCACTCTGTCAGAAGGCGCGTTTCGAAGGCACGTGGCTCGGGCTCGAA
CGTTCTGGTCCAGGAGTGAACTGGAGCGGTGGCGCAAGAAAGGGCTCATA
TTGGGAGGTGGAATGGACAACTCTCTGTTGTACGAGGAAGGGGGGAAAGT
ACTCAACTCGGACGGACTGCGGTATTCGGACGAGATTTGCCGTCATCTGG
CTGTGGATTGCATCGGAGACCTGAGATTGGGAGGAGTGGTGTTGGGACGG
TATACAGCGGTGAGACCGGCGCACTGGTTAAACGTTGAGTTGTTGAGAAA
GCTTTACAGAGATCCGGAGAATTATGTGCTAGAGGGCGACTAA
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protein sequence of Gchil830.t1

>Gchil830.t1 ID=Gchil830.t1|Name=Gchil830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=281bp
MRFVSKALHTGTPSELTLRPAPANAGITFHHRNDCIPATFENVADVTLCT
TLRAPSSSATTVSSVEHLLAALSAAGVDNVQAHTSSAELPIMDGSAWAFT
LALKGQVVPLNAAKRLTIVRRAVRVDSRDGKAHASLWPLPGVRSLDLEVM
TFVNGMSRSNLGTQRVAFTLSEGAFRRHVARARTFWSRSELERWRKKGLI
LGGGMDNSLLYEEGGKVLNSDGLRYSDEICRHLAVDCIGDLRLGGVVLGR
YTAVRPAHWLNVELLRKLYRDPENYVLEGD*
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mRNA from alignment at tig00000017_pilon:151506..152348-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil830.t1 ID=Gchil830.t1|Name=Gchil830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000017_pilon:151506..152348- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTTCGTGAGTAAAGCACTTCACACAGGCACACCATCCGAGCTGAC
GTTGCGCCCAGCTCCAGCAAACGCCGGCATCACCTTTCATCATCGCAATG
ACTGCATCCCCGCAACATTTGAAAACGTAGCGGATGTCACACTGTGCACT
ACCTTGCGCGCGCCATCTTCTTCCGCCACCACCGTTTCAAGCGTAGAACA
CTTGCTGGCTGCTCTATCGGCAGCTGGCGTGGATAACGTACAAGCGCACA
CCTCAAGCGCTGAATTGCCCATCATGGACGGGTCGGCGTGGGCGTTCACT
CTCGCTTTGAAGGGGCAGGTGGTGCCTTTGAACGCTGCAAAACGCTTGAC
GATTGTACGACGAGCGGTACGCGTTGATTCCAGAGATGGTAAAGCACACG
CCTCACTGTGGCCTCTGCCAGGCGTAAGGTCTCTTGACTTGGAGGTGATG
ACGTTTGTAAATGGCATGTCACGTTCAAACCTCGGTACTCAGAGAGTGGC
ATTCACTCTGTCAGAAGGCGCGTTTCGAAGGCACGTGGCTCGGGCTCGAA
CGTTCTGGTCCAGGAGTGAACTGGAGCGGTGGCGCAAGAAAGGGCTCATA
TTGGGAGGTGGAATGGACAACTCTCTGTTGTACGAGGAAGGGGGGAAAGT
ACTCAACTCGGACGGACTGCGGTATTCGGACGAGATTTGCCGTCATCTGG
CTGTGGATTGCATCGGAGACCTGAGATTGGGAGGAGTGGTGTTGGGACGG
TATACAGCGGTGAGACCGGCGCACTGGTTAAACGTTGAGTTGTTGAGAAA
GCTTTACAGAGATCCGGAGAATTATGTGCTAGAGGGCGACTAA
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Coding sequence (CDS) from alignment at tig00000017_pilon:151506..152348-

>Gchil830.t1 ID=Gchil830.t1|Name=Gchil830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00000017_pilon:151506..152348- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTTCGTGAGTAAAGCACTTCACACAGGCACACCATCCGAGCTGAC
GTTGCGCCCAGCTCCAGCAAACGCCGGCATCACCTTTCATCATCGCAATG
ACTGCATCCCCGCAACATTTGAAAACGTAGCGGATGTCACACTGTGCACT
ACCTTGCGCGCGCCATCTTCTTCCGCCACCACCGTTTCAAGCGTAGAACA
CTTGCTGGCTGCTCTATCGGCAGCTGGCGTGGATAACGTACAAGCGCACA
CCTCAAGCGCTGAATTGCCCATCATGGACGGGTCGGCGTGGGCGTTCACT
CTCGCTTTGAAGGGGCAGGTGGTGCCTTTGAACGCTGCAAAACGCTTGAC
GATTGTACGACGAGCGGTACGCGTTGATTCCAGAGATGGTAAAGCACACG
CCTCACTGTGGCCTCTGCCAGGCGTAAGGTCTCTTGACTTGGAGGTGATG
ACGTTTGTAAATGGCATGTCACGTTCAAACCTCGGTACTCAGAGAGTGGC
ATTCACTCTGTCAGAAGGCGCGTTTCGAAGGCACGTGGCTCGGGCTCGAA
CGTTCTGGTCCAGGAGTGAACTGGAGCGGTGGCGCAAGAAAGGGCTCATA
TTGGGAGGTGGAATGGACAACTCTCTGTTGTACGAGGAAGGGGGGAAAGT
ACTCAACTCGGACGGACTGCGGTATTCGGACGAGATTTGCCGTCATCTGG
CTGTGGATTGCATCGGAGACCTGAGATTGGGAGGAGTGGTGTTGGGACGG
TATACAGCGGTGAGACCGGCGCACTGGTTAAACGTTGAGTTGTTGAGAAA
GCTTTACAGAGATCCGGAGAATTATGTGCTAGAGGGCGACTAA
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