Gchil8295.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8295.t1
Unique Name	Gchil8295.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	639

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:1329804..1331720 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	106582.XP_004540255.1
Preferred name	TMEM62
PFAMs	Metallophos
Max annot lvl	33208\|Metazoa
Evalue	2.37e-23
EggNOG OGs	28KV9@1\|root,2QTBN@2759\|Eukaryota,38DU3@33154\|Opisthokonta,3BBCZ@33208\|Metazoa,3CTUR@33213\|Bilateria,485U4@7711\|Chordata,49320@7742\|Vertebrata,49RQ8@7898\|Actinopterygii
Description	Transmembrane protein 62
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8295	Gchil8295	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 1329804..1331720 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8295.t1.start1	Gchil8295.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 1329804..1329806 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8295.t1.CDS1	Gchil8295.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 1329804..1331720 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8295.t1.exon1	Gchil8295.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 1329804..1331720 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8295.t1.stop1	Gchil8295.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 1331718..1331720 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8295.t1	Gchil8295.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 1329804..1331720 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:1329804..1331720+
coding sequence from alignment at tig00004384_pilon:1329804..1331720+

mRNA sequence

>Gchil8295.t1 ID=Gchil8295.t1|Name=Gchil8295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=639bp
MTSANCRGSAARKSFQTALILSVPYALYVLTLAFLMAIYGGHHYAYLLSN
PFCSIPSPPYGTNAPRLILHISDLHVSDVYKGMAKHSLRSFATQSLPKWA
PYSSALLVTGDLVNSAIKQPYPLGKKSKQIHSEWEWLQSFAASVNDSVLW
KSVPGNHDSFGGYDPLHFVKGCTGPLTDTASSRVDEYVAVGKPPLTMYGI
DATLPRPLHRPLNFFGDAKDLSAQLDNKLSSSSEDGDVLVYGHYPSSTMK
MGERVHMVALRKDSYKWKRPRFSAYLSGHLHTLYGLAEQGLQAVSISGTL
ELQLPDMVRSRAYRVLIFDSGYMSFKDFRVGKDEGLEQVVVMNPPRAGLC
SAGAGYGAKQSTHVRLFSAGLNLVEIAAHVWINGEDIGPISKLLCSDEES
MERGSTTCDHVYGVRWDPSRYASGTHQLSIRSGSENSISFAFSLDGSPEK
NWAPWLERVVGTLFGLSNFPSMAKALIRVAFLFCVFISARGVFSRNLVSL
GLVLLSFFLFLGPILIARDLIDGEPGWSFIGIHYMYMPTGIYPAGIDPSY
LLASAVVWRSLLPFCFLNALAHRGRIKTFCRKTFLGFLLLYNYGSLSWSL
NIWGAHGFLECIISPSCLPLTVGCILTTRKALRRTACE*

spliced messenger RNA

>Gchil8295.t1 ID=Gchil8295.t1|Name=Gchil8295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at tig00004384_pilon:1329804..1331720+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCGGCAAATTGCCGCGGTTCTGCCGCCAGGAAGTCTTTTCAAAC
CGCATTAATACTCAGCGTTCCGTACGCTCTTTATGTTCTAACTCTTGCGT
TTCTAATGGCGATTTACGGCGGTCATCACTACGCCTATCTTCTGTCCAAC
CCCTTTTGCTCAATACCATCGCCTCCGTACGGTACCAATGCTCCGCGCCT
AATTTTGCACATTTCTGATCTTCATGTCAGTGATGTTTACAAAGGTATGG
CCAAACACAGTTTACGCAGCTTCGCCACACAGTCTCTTCCGAAGTGGGCA
CCATACAGCTCCGCACTTCTCGTCACGGGGGACCTCGTCAACTCTGCCAT
AAAGCAACCGTACCCCCTAGGAAAGAAAAGCAAACAGATTCACTCAGAGT
GGGAGTGGCTTCAATCATTCGCTGCTTCTGTGAATGACTCTGTCTTATGG
AAATCTGTGCCTGGAAATCATGATTCTTTTGGAGGATACGACCCGTTGCA
TTTCGTGAAGGGTTGTACTGGTCCTCTTACTGACACTGCGTCATCTCGCG
TGGATGAATATGTAGCAGTGGGAAAACCGCCACTTACAATGTACGGCATC
GATGCTACACTGCCAAGACCGTTGCATAGACCCCTCAATTTTTTTGGGGA
TGCTAAAGATTTGAGTGCGCAATTGGACAACAAGCTCAGCAGTTCTAGTG
AAGATGGTGATGTCCTTGTGTACGGTCACTATCCATCGTCGACGATGAAA
ATGGGCGAACGTGTGCATATGGTAGCGCTCCGAAAGGACTCTTACAAGTG
GAAAAGACCACGGTTCTCCGCTTATTTGTCGGGTCACTTGCACACGCTTT
ACGGGCTGGCAGAACAGGGCTTGCAGGCTGTGTCTATCTCAGGCACATTG
GAGCTGCAGTTGCCAGATATGGTGCGGTCTCGAGCGTACAGAGTACTTAT
CTTCGATTCTGGATACATGTCTTTCAAAGATTTTAGAGTAGGGAAAGATG
AAGGCCTGGAGCAAGTCGTAGTAATGAACCCGCCAAGAGCAGGGCTTTGT
TCAGCTGGAGCTGGTTATGGCGCAAAGCAGTCAACTCACGTGCGTCTCTT
CAGCGCAGGGTTGAATCTTGTAGAAATAGCTGCTCATGTATGGATCAATG
GGGAAGATATTGGTCCCATATCAAAACTTCTATGTTCTGATGAAGAAAGC
ATGGAGCGTGGGAGTACCACATGCGATCACGTATACGGAGTGCGATGGGA
TCCGAGTCGGTATGCGAGTGGAACACATCAGCTTTCCATTCGATCCGGGT
CGGAAAATTCCATATCGTTTGCCTTCTCATTAGACGGGTCTCCGGAGAAG
AACTGGGCTCCATGGCTAGAACGGGTGGTGGGGACCTTGTTCGGTCTTTC
AAACTTTCCATCAATGGCCAAAGCTCTGATCAGGGTTGCCTTCTTGTTTT
GTGTATTCATTAGCGCCAGAGGAGTCTTCAGCCGTAATCTTGTCTCGCTT
GGCTTGGTGCTCTTGTCCTTCTTTCTCTTTCTGGGCCCAATTTTGATTGC
TCGCGATCTCATAGATGGAGAACCAGGATGGAGCTTTATTGGGATCCATT
ATATGTACATGCCTACTGGGATATATCCTGCCGGAATTGACCCCTCCTAC
CTACTTGCGAGTGCAGTTGTGTGGCGCTCGCTACTACCGTTTTGCTTTCT
TAATGCTTTAGCGCATCGCGGTCGGATTAAGACCTTTTGCCGAAAGACCT
TTCTTGGCTTCTTACTTCTGTATAACTATGGCAGTCTTTCTTGGAGCTTG
AATATTTGGGGCGCTCATGGGTTTCTTGAATGTATTATAAGTCCATCATG
TCTTCCGCTAACCGTAGGATGTATATTAACCACAAGGAAAGCATTGAGAC
GGACAGCCTGTGAATGA

protein sequence of Gchil8295.t1

>Gchil8295.t1 ID=Gchil8295.t1|Name=Gchil8295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=639bp
MTSANCRGSAARKSFQTALILSVPYALYVLTLAFLMAIYGGHHYAYLLSN
PFCSIPSPPYGTNAPRLILHISDLHVSDVYKGMAKHSLRSFATQSLPKWA
PYSSALLVTGDLVNSAIKQPYPLGKKSKQIHSEWEWLQSFAASVNDSVLW
KSVPGNHDSFGGYDPLHFVKGCTGPLTDTASSRVDEYVAVGKPPLTMYGI
DATLPRPLHRPLNFFGDAKDLSAQLDNKLSSSSEDGDVLVYGHYPSSTMK
MGERVHMVALRKDSYKWKRPRFSAYLSGHLHTLYGLAEQGLQAVSISGTL
ELQLPDMVRSRAYRVLIFDSGYMSFKDFRVGKDEGLEQVVVMNPPRAGLC
SAGAGYGAKQSTHVRLFSAGLNLVEIAAHVWINGEDIGPISKLLCSDEES
MERGSTTCDHVYGVRWDPSRYASGTHQLSIRSGSENSISFAFSLDGSPEK
NWAPWLERVVGTLFGLSNFPSMAKALIRVAFLFCVFISARGVFSRNLVSL
GLVLLSFFLFLGPILIARDLIDGEPGWSFIGIHYMYMPTGIYPAGIDPSY
LLASAVVWRSLLPFCFLNALAHRGRIKTFCRKTFLGFLLLYNYGSLSWSL
NIWGAHGFLECIISPSCLPLTVGCILTTRKALRRTACE*

mRNA from alignment at tig00004384_pilon:1329804..1331720+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8295.t1 ID=Gchil8295.t1|Name=Gchil8295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at tig00004384_pilon:1329804..1331720+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCGGCAAATTGCCGCGGTTCTGCCGCCAGGAAGTCTTTTCAAAC
CGCATTAATACTCAGCGTTCCGTACGCTCTTTATGTTCTAACTCTTGCGT
TTCTAATGGCGATTTACGGCGGTCATCACTACGCCTATCTTCTGTCCAAC
CCCTTTTGCTCAATACCATCGCCTCCGTACGGTACCAATGCTCCGCGCCT
AATTTTGCACATTTCTGATCTTCATGTCAGTGATGTTTACAAAGGTATGG
CCAAACACAGTTTACGCAGCTTCGCCACACAGTCTCTTCCGAAGTGGGCA
CCATACAGCTCCGCACTTCTCGTCACGGGGGACCTCGTCAACTCTGCCAT
AAAGCAACCGTACCCCCTAGGAAAGAAAAGCAAACAGATTCACTCAGAGT
GGGAGTGGCTTCAATCATTCGCTGCTTCTGTGAATGACTCTGTCTTATGG
AAATCTGTGCCTGGAAATCATGATTCTTTTGGAGGATACGACCCGTTGCA
TTTCGTGAAGGGTTGTACTGGTCCTCTTACTGACACTGCGTCATCTCGCG
TGGATGAATATGTAGCAGTGGGAAAACCGCCACTTACAATGTACGGCATC
GATGCTACACTGCCAAGACCGTTGCATAGACCCCTCAATTTTTTTGGGGA
TGCTAAAGATTTGAGTGCGCAATTGGACAACAAGCTCAGCAGTTCTAGTG
AAGATGGTGATGTCCTTGTGTACGGTCACTATCCATCGTCGACGATGAAA
ATGGGCGAACGTGTGCATATGGTAGCGCTCCGAAAGGACTCTTACAAGTG
GAAAAGACCACGGTTCTCCGCTTATTTGTCGGGTCACTTGCACACGCTTT
ACGGGCTGGCAGAACAGGGCTTGCAGGCTGTGTCTATCTCAGGCACATTG
GAGCTGCAGTTGCCAGATATGGTGCGGTCTCGAGCGTACAGAGTACTTAT
CTTCGATTCTGGATACATGTCTTTCAAAGATTTTAGAGTAGGGAAAGATG
AAGGCCTGGAGCAAGTCGTAGTAATGAACCCGCCAAGAGCAGGGCTTTGT
TCAGCTGGAGCTGGTTATGGCGCAAAGCAGTCAACTCACGTGCGTCTCTT
CAGCGCAGGGTTGAATCTTGTAGAAATAGCTGCTCATGTATGGATCAATG
GGGAAGATATTGGTCCCATATCAAAACTTCTATGTTCTGATGAAGAAAGC
ATGGAGCGTGGGAGTACCACATGCGATCACGTATACGGAGTGCGATGGGA
TCCGAGTCGGTATGCGAGTGGAACACATCAGCTTTCCATTCGATCCGGGT
CGGAAAATTCCATATCGTTTGCCTTCTCATTAGACGGGTCTCCGGAGAAG
AACTGGGCTCCATGGCTAGAACGGGTGGTGGGGACCTTGTTCGGTCTTTC
AAACTTTCCATCAATGGCCAAAGCTCTGATCAGGGTTGCCTTCTTGTTTT
GTGTATTCATTAGCGCCAGAGGAGTCTTCAGCCGTAATCTTGTCTCGCTT
GGCTTGGTGCTCTTGTCCTTCTTTCTCTTTCTGGGCCCAATTTTGATTGC
TCGCGATCTCATAGATGGAGAACCAGGATGGAGCTTTATTGGGATCCATT
ATATGTACATGCCTACTGGGATATATCCTGCCGGAATTGACCCCTCCTAC
CTACTTGCGAGTGCAGTTGTGTGGCGCTCGCTACTACCGTTTTGCTTTCT
TAATGCTTTAGCGCATCGCGGTCGGATTAAGACCTTTTGCCGAAAGACCT
TTCTTGGCTTCTTACTTCTGTATAACTATGGCAGTCTTTCTTGGAGCTTG
AATATTTGGGGCGCTCATGGGTTTCTTGAATGTATTATAAGTCCATCATG
TCTTCCGCTAACCGTAGGATGTATATTAACCACAAGGAAAGCATTGAGAC
GGACAGCCTGTGAATGA

Coding sequence (CDS) from alignment at tig00004384_pilon:1329804..1331720+

>Gchil8295.t1 ID=Gchil8295.t1|Name=Gchil8295.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1917bp|location=Sequence derived from alignment at tig00004384_pilon:1329804..1331720+ (Gracilaria chilensis NLEC103_M9 male)
ATGACATCGGCAAATTGCCGCGGTTCTGCCGCCAGGAAGTCTTTTCAAAC
CGCATTAATACTCAGCGTTCCGTACGCTCTTTATGTTCTAACTCTTGCGT
TTCTAATGGCGATTTACGGCGGTCATCACTACGCCTATCTTCTGTCCAAC
CCCTTTTGCTCAATACCATCGCCTCCGTACGGTACCAATGCTCCGCGCCT
AATTTTGCACATTTCTGATCTTCATGTCAGTGATGTTTACAAAGGTATGG
CCAAACACAGTTTACGCAGCTTCGCCACACAGTCTCTTCCGAAGTGGGCA
CCATACAGCTCCGCACTTCTCGTCACGGGGGACCTCGTCAACTCTGCCAT
AAAGCAACCGTACCCCCTAGGAAAGAAAAGCAAACAGATTCACTCAGAGT
GGGAGTGGCTTCAATCATTCGCTGCTTCTGTGAATGACTCTGTCTTATGG
AAATCTGTGCCTGGAAATCATGATTCTTTTGGAGGATACGACCCGTTGCA
TTTCGTGAAGGGTTGTACTGGTCCTCTTACTGACACTGCGTCATCTCGCG
TGGATGAATATGTAGCAGTGGGAAAACCGCCACTTACAATGTACGGCATC
GATGCTACACTGCCAAGACCGTTGCATAGACCCCTCAATTTTTTTGGGGA
TGCTAAAGATTTGAGTGCGCAATTGGACAACAAGCTCAGCAGTTCTAGTG
AAGATGGTGATGTCCTTGTGTACGGTCACTATCCATCGTCGACGATGAAA
ATGGGCGAACGTGTGCATATGGTAGCGCTCCGAAAGGACTCTTACAAGTG
GAAAAGACCACGGTTCTCCGCTTATTTGTCGGGTCACTTGCACACGCTTT
ACGGGCTGGCAGAACAGGGCTTGCAGGCTGTGTCTATCTCAGGCACATTG
GAGCTGCAGTTGCCAGATATGGTGCGGTCTCGAGCGTACAGAGTACTTAT
CTTCGATTCTGGATACATGTCTTTCAAAGATTTTAGAGTAGGGAAAGATG
AAGGCCTGGAGCAAGTCGTAGTAATGAACCCGCCAAGAGCAGGGCTTTGT
TCAGCTGGAGCTGGTTATGGCGCAAAGCAGTCAACTCACGTGCGTCTCTT
CAGCGCAGGGTTGAATCTTGTAGAAATAGCTGCTCATGTATGGATCAATG
GGGAAGATATTGGTCCCATATCAAAACTTCTATGTTCTGATGAAGAAAGC
ATGGAGCGTGGGAGTACCACATGCGATCACGTATACGGAGTGCGATGGGA
TCCGAGTCGGTATGCGAGTGGAACACATCAGCTTTCCATTCGATCCGGGT
CGGAAAATTCCATATCGTTTGCCTTCTCATTAGACGGGTCTCCGGAGAAG
AACTGGGCTCCATGGCTAGAACGGGTGGTGGGGACCTTGTTCGGTCTTTC
AAACTTTCCATCAATGGCCAAAGCTCTGATCAGGGTTGCCTTCTTGTTTT
GTGTATTCATTAGCGCCAGAGGAGTCTTCAGCCGTAATCTTGTCTCGCTT
GGCTTGGTGCTCTTGTCCTTCTTTCTCTTTCTGGGCCCAATTTTGATTGC
TCGCGATCTCATAGATGGAGAACCAGGATGGAGCTTTATTGGGATCCATT
ATATGTACATGCCTACTGGGATATATCCTGCCGGAATTGACCCCTCCTAC
CTACTTGCGAGTGCAGTTGTGTGGCGCTCGCTACTACCGTTTTGCTTTCT
TAATGCTTTAGCGCATCGCGGTCGGATTAAGACCTTTTGCCGAAAGACCT
TTCTTGGCTTCTTACTTCTGTATAACTATGGCAGTCTTTCTTGGAGCTTG
AATATTTGGGGCGCTCATGGGTTTCTTGAATGTATTATAAGTCCATCATG
TCTTCCGCTAACCGTAGGATGTATATTAACCACAAGGAAAGCATTGAGAC
GGACAGCCTGTGAATGA