Gchil8292.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8292.t1
Unique Name	Gchil8292.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	659

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:1255683..1257659 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8292	Gchil8292	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 1255683..1257659 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8292.t1.start1	Gchil8292.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 1255683..1255685 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8292.t1.CDS1	Gchil8292.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 1255683..1257659 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8292.t1.exon1	Gchil8292.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 1255683..1257659 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8292.t1.stop1	Gchil8292.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 1257657..1257659 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8292.t1	Gchil8292.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 1255683..1257659 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:1255683..1257659+
coding sequence from alignment at tig00004384_pilon:1255683..1257659+

mRNA sequence

>Gchil8292.t1 ID=Gchil8292.t1|Name=Gchil8292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=659bp
MSAFVNSPGTKFQPFSVAFTTEVNHSPSTNDSWSIHFNNLTRGPGIVIRH
HQMSVREFIALNNICNERDFDLTTYLSGRQAPESMKEYDGLDTDVELRVL
GKRSSKESSFYDHFILALQVTISTILSRKVDDDYVLRGTNLKEADIKDIL
QVQTEALGSFVVDMPTLCGMRDYLRAETLVSKMPKDRDCSFLLGDADSHP
ILQKWVPEVGKRILSNEEAMTYVSYTVLPLYDGSFLDKNSIGDTFATAWV
TKNIVQGECTTKNGTETVTPIYYEWAHFDRRHENCTSYRLQAGTTLIVPA
TAVVSFKGSLRHNVRILGCVLKAWTSLETKAIVLQERMPVLTEKCFVREL
FYGGHYPKPKTKDMRKMESSWLENIRMNIGAIPSLKTLDPTCKNRLKNVK
ILEESAQKGGNNLGAVLRKNPTIVVLQNIAQLQKKGEREPLDGWLFENIP
YARIFQCCKLSNAPQDLNLADVDFRLLRTTGINRNTKESFGSGSEDSEKE
SDDSDSEEGEDDGEDSQETLENQIISRHKEERTPEIEHEPGKLQKNASSA
FNSDHIPTRKEHQKDHSTKNSEAQTLSGTRDYHSPLEEKAEKGRHLKGIT
FQEEDREEKCLPKTEKKILKSKKAVSLKRERSKRSRKDYGQNPEDTPKTA
KKPKTLNQ*

spliced messenger RNA

>Gchil8292.t1 ID=Gchil8292.t1|Name=Gchil8292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00004384_pilon:1255683..1257659+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTTTTGTCAATAGCCCAGGAACTAAATTCCAACCCTTCTCGGT
TGCCTTCACAACTGAAGTCAACCATTCACCAAGCACAAACGACTCCTGGA
GCATTCACTTCAACAACTTGACACGAGGCCCTGGAATTGTAATTAGGCAC
CACCAGATGAGTGTAAGAGAATTCATCGCTCTGAACAATATTTGCAACGA
AAGAGATTTTGATTTAACAACCTATTTGTCGGGCCGTCAAGCACCAGAAT
CTATGAAAGAATATGATGGACTGGATACTGATGTAGAGCTCCGTGTGCTT
GGAAAAAGATCGAGCAAAGAGTCCTCCTTTTACGACCATTTCATTCTTGC
CTTGCAGGTGACAATTTCAACCATTCTAAGCAGGAAAGTAGATGATGACT
ACGTGCTTCGCGGAACCAATTTAAAGGAAGCAGATATCAAAGATATTCTT
CAGGTACAGACTGAAGCCTTAGGTTCCTTTGTCGTGGACATGCCAACGCT
TTGTGGAATGCGAGACTACTTGCGAGCTGAAACACTTGTTTCAAAAATGC
CCAAAGATCGAGATTGTAGTTTTTTGCTTGGCGATGCTGATTCTCACCCA
ATCCTCCAAAAATGGGTTCCTGAAGTAGGGAAAAGAATTCTGTCGAATGA
AGAAGCAATGACGTATGTATCTTATACAGTTCTTCCTTTGTATGATGGAA
GCTTTTTGGACAAGAACAGCATAGGGGACACTTTCGCAACAGCATGGGTA
ACAAAAAACATTGTGCAAGGAGAATGCACAACTAAGAATGGCACTGAAAC
TGTTACCCCTATTTACTACGAATGGGCTCATTTTGATAGAAGACATGAAA
ACTGCACTTCATATCGTCTTCAAGCTGGTACGACTCTCATTGTTCCTGCC
ACAGCTGTAGTAAGCTTCAAAGGATCTTTGAGACATAATGTAAGGATCTT
GGGATGCGTCTTAAAAGCTTGGACTAGCTTGGAAACGAAAGCAATCGTTC
TCCAGGAAAGAATGCCTGTTTTAACAGAGAAATGTTTCGTTCGAGAGCTG
TTTTACGGAGGTCATTATCCCAAACCCAAAACTAAGGATATGAGAAAAAT
GGAAAGCAGTTGGTTAGAAAATATACGAATGAACATTGGGGCCATTCCAT
CTTTGAAAACTCTAGACCCTACCTGCAAAAATCGATTGAAAAATGTGAAG
ATTCTGGAAGAGTCAGCGCAAAAGGGTGGTAACAATCTCGGGGCGGTATT
AAGGAAAAACCCAACCATTGTAGTTCTTCAAAATATCGCACAACTTCAGA
AAAAGGGCGAAAGAGAACCATTAGACGGATGGCTTTTTGAAAATATACCT
TACGCAAGAATCTTTCAGTGCTGCAAACTTTCAAACGCCCCTCAGGATCT
CAATTTGGCAGATGTGGACTTTCGATTGTTAAGAACAACGGGTATCAATC
GAAATACGAAAGAATCTTTTGGTAGCGGTAGCGAGGATAGTGAAAAAGAA
AGTGACGATTCTGATAGTGAAGAAGGAGAAGATGATGGAGAGGATAGCCA
AGAGACATTAGAAAATCAAATCATTTCACGTCACAAAGAAGAAAGAACTC
CGGAAATCGAGCATGAGCCTGGAAAATTGCAAAAAAATGCATCATCGGCA
TTCAACTCTGATCACATCCCAACAAGAAAAGAACACCAAAAAGATCATTC
TACAAAAAATTCTGAAGCCCAAACTTTGAGTGGTACACGTGATTACCATA
GTCCTCTGGAAGAAAAAGCGGAAAAAGGACGGCATTTAAAAGGCATCACG
TTTCAAGAAGAAGACCGAGAAGAGAAATGTCTCCCAAAAACTGAGAAGAA
GATTTTAAAATCAAAGAAAGCTGTCAGTCTTAAGCGAGAAAGGTCGAAGC
GGTCTCGAAAAGACTATGGTCAAAACCCCGAAGATACTCCAAAAACCGCC
AAAAAACCTAAGACACTCAACCAATAA

protein sequence of Gchil8292.t1

>Gchil8292.t1 ID=Gchil8292.t1|Name=Gchil8292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=659bp
MSAFVNSPGTKFQPFSVAFTTEVNHSPSTNDSWSIHFNNLTRGPGIVIRH
HQMSVREFIALNNICNERDFDLTTYLSGRQAPESMKEYDGLDTDVELRVL
GKRSSKESSFYDHFILALQVTISTILSRKVDDDYVLRGTNLKEADIKDIL
QVQTEALGSFVVDMPTLCGMRDYLRAETLVSKMPKDRDCSFLLGDADSHP
ILQKWVPEVGKRILSNEEAMTYVSYTVLPLYDGSFLDKNSIGDTFATAWV
TKNIVQGECTTKNGTETVTPIYYEWAHFDRRHENCTSYRLQAGTTLIVPA
TAVVSFKGSLRHNVRILGCVLKAWTSLETKAIVLQERMPVLTEKCFVREL
FYGGHYPKPKTKDMRKMESSWLENIRMNIGAIPSLKTLDPTCKNRLKNVK
ILEESAQKGGNNLGAVLRKNPTIVVLQNIAQLQKKGEREPLDGWLFENIP
YARIFQCCKLSNAPQDLNLADVDFRLLRTTGINRNTKESFGSGSEDSEKE
SDDSDSEEGEDDGEDSQETLENQIISRHKEERTPEIEHEPGKLQKNASSA
FNSDHIPTRKEHQKDHSTKNSEAQTLSGTRDYHSPLEEKAEKGRHLKGIT
FQEEDREEKCLPKTEKKILKSKKAVSLKRERSKRSRKDYGQNPEDTPKTA
KKPKTLNQ*

mRNA from alignment at tig00004384_pilon:1255683..1257659+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8292.t1 ID=Gchil8292.t1|Name=Gchil8292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1977bp|location=Sequence derived from alignment at tig00004384_pilon:1255683..1257659+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCTTTTGTCAATAGCCCAGGAACTAAATTCCAACCCTTCTCGGT
TGCCTTCACAACTGAAGTCAACCATTCACCAAGCACAAACGACTCCTGGA
GCATTCACTTCAACAACTTGACACGAGGCCCTGGAATTGTAATTAGGCAC
CACCAGATGAGTGTAAGAGAATTCATCGCTCTGAACAATATTTGCAACGA
AAGAGATTTTGATTTAACAACCTATTTGTCGGGCCGTCAAGCACCAGAAT
CTATGAAAGAATATGATGGACTGGATACTGATGTAGAGCTCCGTGTGCTT
GGAAAAAGATCGAGCAAAGAGTCCTCCTTTTACGACCATTTCATTCTTGC
CTTGCAGGTGACAATTTCAACCATTCTAAGCAGGAAAGTAGATGATGACT
ACGTGCTTCGCGGAACCAATTTAAAGGAAGCAGATATCAAAGATATTCTT
CAGGTACAGACTGAAGCCTTAGGTTCCTTTGTCGTGGACATGCCAACGCT
TTGTGGAATGCGAGACTACTTGCGAGCTGAAACACTTGTTTCAAAAATGC
CCAAAGATCGAGATTGTAGTTTTTTGCTTGGCGATGCTGATTCTCACCCA
ATCCTCCAAAAATGGGTTCCTGAAGTAGGGAAAAGAATTCTGTCGAATGA
AGAAGCAATGACGTATGTATCTTATACAGTTCTTCCTTTGTATGATGGAA
GCTTTTTGGACAAGAACAGCATAGGGGACACTTTCGCAACAGCATGGGTA
ACAAAAAACATTGTGCAAGGAGAATGCACAACTAAGAATGGCACTGAAAC
TGTTACCCCTATTTACTACGAATGGGCTCATTTTGATAGAAGACATGAAA
ACTGCACTTCATATCGTCTTCAAGCTGGTACGACTCTCATTGTTCCTGCC
ACAGCTGTAGTAAGCTTCAAAGGATCTTTGAGACATAATGTAAGGATCTT
GGGATGCGTCTTAAAAGCTTGGACTAGCTTGGAAACGAAAGCAATCGTTC
TCCAGGAAAGAATGCCTGTTTTAACAGAGAAATGTTTCGTTCGAGAGCTG
TTTTACGGAGGTCATTATCCCAAACCCAAAACTAAGGATATGAGAAAAAT
GGAAAGCAGTTGGTTAGAAAATATACGAATGAACATTGGGGCCATTCCAT
CTTTGAAAACTCTAGACCCTACCTGCAAAAATCGATTGAAAAATGTGAAG
ATTCTGGAAGAGTCAGCGCAAAAGGGTGGTAACAATCTCGGGGCGGTATT
AAGGAAAAACCCAACCATTGTAGTTCTTCAAAATATCGCACAACTTCAGA
AAAAGGGCGAAAGAGAACCATTAGACGGATGGCTTTTTGAAAATATACCT
TACGCAAGAATCTTTCAGTGCTGCAAACTTTCAAACGCCCCTCAGGATCT
CAATTTGGCAGATGTGGACTTTCGATTGTTAAGAACAACGGGTATCAATC
GAAATACGAAAGAATCTTTTGGTAGCGGTAGCGAGGATAGTGAAAAAGAA
AGTGACGATTCTGATAGTGAAGAAGGAGAAGATGATGGAGAGGATAGCCA
AGAGACATTAGAAAATCAAATCATTTCACGTCACAAAGAAGAAAGAACTC
CGGAAATCGAGCATGAGCCTGGAAAATTGCAAAAAAATGCATCATCGGCA
TTCAACTCTGATCACATCCCAACAAGAAAAGAACACCAAAAAGATCATTC
TACAAAAAATTCTGAAGCCCAAACTTTGAGTGGTACACGTGATTACCATA
GTCCTCTGGAAGAAAAAGCGGAAAAAGGACGGCATTTAAAAGGCATCACG
TTTCAAGAAGAAGACCGAGAAGAGAAATGTCTCCCAAAAACTGAGAAGAA
GATTTTAAAATCAAAGAAAGCTGTCAGTCTTAAGCGAGAAAGGTCGAAGC
GGTCTCGAAAAGACTATGGTCAAAACCCCGAAGATACTCCAAAAACCGCC
AAAAAACCTAAGACACTCAACCAATAA

Coding sequence (CDS) from alignment at tig00004384_pilon:1255683..1257659+

>Gchil8292.t1 ID=Gchil8292.t1|Name=Gchil8292.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1977bp|location=Sequence derived from alignment at tig00004384_pilon:1255683..1257659+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGCTTTTGTCAATAGCCCAGGAACTAAATTCCAACCCTTCTCGGT
TGCCTTCACAACTGAAGTCAACCATTCACCAAGCACAAACGACTCCTGGA
GCATTCACTTCAACAACTTGACACGAGGCCCTGGAATTGTAATTAGGCAC
CACCAGATGAGTGTAAGAGAATTCATCGCTCTGAACAATATTTGCAACGA
AAGAGATTTTGATTTAACAACCTATTTGTCGGGCCGTCAAGCACCAGAAT
CTATGAAAGAATATGATGGACTGGATACTGATGTAGAGCTCCGTGTGCTT
GGAAAAAGATCGAGCAAAGAGTCCTCCTTTTACGACCATTTCATTCTTGC
CTTGCAGGTGACAATTTCAACCATTCTAAGCAGGAAAGTAGATGATGACT
ACGTGCTTCGCGGAACCAATTTAAAGGAAGCAGATATCAAAGATATTCTT
CAGGTACAGACTGAAGCCTTAGGTTCCTTTGTCGTGGACATGCCAACGCT
TTGTGGAATGCGAGACTACTTGCGAGCTGAAACACTTGTTTCAAAAATGC
CCAAAGATCGAGATTGTAGTTTTTTGCTTGGCGATGCTGATTCTCACCCA
ATCCTCCAAAAATGGGTTCCTGAAGTAGGGAAAAGAATTCTGTCGAATGA
AGAAGCAATGACGTATGTATCTTATACAGTTCTTCCTTTGTATGATGGAA
GCTTTTTGGACAAGAACAGCATAGGGGACACTTTCGCAACAGCATGGGTA
ACAAAAAACATTGTGCAAGGAGAATGCACAACTAAGAATGGCACTGAAAC
TGTTACCCCTATTTACTACGAATGGGCTCATTTTGATAGAAGACATGAAA
ACTGCACTTCATATCGTCTTCAAGCTGGTACGACTCTCATTGTTCCTGCC
ACAGCTGTAGTAAGCTTCAAAGGATCTTTGAGACATAATGTAAGGATCTT
GGGATGCGTCTTAAAAGCTTGGACTAGCTTGGAAACGAAAGCAATCGTTC
TCCAGGAAAGAATGCCTGTTTTAACAGAGAAATGTTTCGTTCGAGAGCTG
TTTTACGGAGGTCATTATCCCAAACCCAAAACTAAGGATATGAGAAAAAT
GGAAAGCAGTTGGTTAGAAAATATACGAATGAACATTGGGGCCATTCCAT
CTTTGAAAACTCTAGACCCTACCTGCAAAAATCGATTGAAAAATGTGAAG
ATTCTGGAAGAGTCAGCGCAAAAGGGTGGTAACAATCTCGGGGCGGTATT
AAGGAAAAACCCAACCATTGTAGTTCTTCAAAATATCGCACAACTTCAGA
AAAAGGGCGAAAGAGAACCATTAGACGGATGGCTTTTTGAAAATATACCT
TACGCAAGAATCTTTCAGTGCTGCAAACTTTCAAACGCCCCTCAGGATCT
CAATTTGGCAGATGTGGACTTTCGATTGTTAAGAACAACGGGTATCAATC
GAAATACGAAAGAATCTTTTGGTAGCGGTAGCGAGGATAGTGAAAAAGAA
AGTGACGATTCTGATAGTGAAGAAGGAGAAGATGATGGAGAGGATAGCCA
AGAGACATTAGAAAATCAAATCATTTCACGTCACAAAGAAGAAAGAACTC
CGGAAATCGAGCATGAGCCTGGAAAATTGCAAAAAAATGCATCATCGGCA
TTCAACTCTGATCACATCCCAACAAGAAAAGAACACCAAAAAGATCATTC
TACAAAAAATTCTGAAGCCCAAACTTTGAGTGGTACACGTGATTACCATA
GTCCTCTGGAAGAAAAAGCGGAAAAAGGACGGCATTTAAAAGGCATCACG
TTTCAAGAAGAAGACCGAGAAGAGAAATGTCTCCCAAAAACTGAGAAGAA
GATTTTAAAATCAAAGAAAGCTGTCAGTCTTAAGCGAGAAAGGTCGAAGC
GGTCTCGAAAAGACTATGGTCAAAACCCCGAAGATACTCCAAAAACCGCC
AAAAAACCTAAGACACTCAACCAATAA