Gchil828.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil828.t1
Unique NameGchil828.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length794
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:118632..121013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006676799.1
PFAMsNicastrin
Max annot lvl4751|Fungi
Evalue3.73e-21
EggNOG OGsKOG2657@1|root,KOG2657@2759|Eukaryota,39RQA@33154|Opisthokonta,3P03M@4751|Fungi
DescriptionNicastrin
COG categoryOT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil828Gchil828Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 118632..121013 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil828.t1.stop1Gchil828.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 118632..118634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil828.t1.CDS1Gchil828.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 118632..121013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil828.t1.exon1Gchil828.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 118632..121013 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil828.t1.start1Gchil828.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 121011..121013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil828.t1Gchil828.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 118632..121013 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil828.t1 ID=Gchil828.t1|Name=Gchil828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=794bp
MLPTNRGASFSAALALFLCLHLTTITTISAVTLERLSRFRRRCYSNLPMC
IMQSNNASSRGCGQCDADIREAPLRHARNVVELRQIERQTERAIVLVPER
VFFSVKVRSSIRFLPKFAALIVYRGPPERPDEFVDEAVSNETLDPLFNYS
LEESEPNRLYNFYGDIGSEEQCNQSNPRRNNPGDCILQQFIPFNVFHINS
SFAGHILQSAARFRDPNAIPDTEQKDTFSPQYKLQSIGRMWACATSMTPT
PSATITSESTINDQNAGSLITSQQCLKDKTCLPIGTNSVWSALGRVRPIT
PALRPKYLFITAPMDSYAFFPQFGTGAGAEIASLAVLMAVSAQVAVFWRD
SERQSAFERQPVYIAFNAETWGYAGSSRFLRDMMEFNCTEEADFTKGEKG
CNQPFIDNLKFKEFKDADIQVLNIGQLITPATTTEGMSDSNFFAHYENGT
STMLESDLRNSFEQRKLEFQRGGFDYGSDVPLTPIDASQSFKFYFKDRKI
DVVSITNYPLNFSTEIYHSALDTKLRISRDGQRGSMYEAAHAIASAVVSI
ALKKSRSVQVNTTIIDNVITCMTGNWTNCPMIQEYLGEDYENIIVEPGNY
AGPFFPAKVLRYNNPSAAGKLALVRAFFAHHNRFTESTVKCARETDCAGY
NRDINEEESPKSQSDLLDAQCTRGRCVVSDTYSHRAFGGGINMVDPKGVF
ELEKKYARESFDGNNPRQGDWAESFWDPDTGFCEQVRDSIIYEAVVFGVG
LCVLVLSFGFGIWLDRALFEDKTLVTGEESSISSIGELLIAPV*
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spliced messenger RNA

>Gchil828.t1 ID=Gchil828.t1|Name=Gchil828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2382bp|location=Sequence derived from alignment at tig00000017_pilon:118632..121013- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCCCACCAACCGCGGTGCGTCGTTCTCCGCCGCACTCGCCTTGTT
TCTGTGCCTGCATCTCACCACCATCACCACCATCAGCGCCGTCACCCTCG
AAAGGCTCAGCCGCTTTCGCCGCAGGTGCTACTCAAACCTGCCCATGTGC
ATCATGCAAAGCAACAATGCCTCCTCCCGCGGATGCGGTCAGTGCGACGC
AGACATTCGCGAGGCCCCCCTGCGCCATGCGCGAAACGTGGTAGAGCTGC
GCCAGATCGAACGCCAGACGGAAAGAGCCATCGTTCTCGTTCCCGAGCGC
GTCTTTTTCTCAGTTAAGGTCAGGTCCAGCATCAGGTTTTTGCCCAAGTT
TGCAGCTCTCATCGTGTACAGAGGACCCCCCGAGCGCCCGGATGAATTTG
TCGACGAAGCCGTTTCCAACGAAACACTCGACCCCCTTTTCAACTACTCG
CTTGAGGAATCGGAACCCAATCGATTGTACAACTTTTACGGCGATATAGG
TTCGGAGGAGCAGTGCAATCAGAGTAATCCGCGTCGCAACAACCCGGGTG
ACTGCATTCTTCAGCAATTCATCCCCTTCAACGTTTTCCACATCAATTCC
TCTTTTGCCGGCCACATTCTCCAGTCGGCTGCTCGATTTCGTGATCCTAA
CGCCATACCCGACACTGAACAGAAAGACACCTTTTCCCCTCAATATAAAC
TTCAATCCATTGGTAGAATGTGGGCATGCGCAACCAGCATGACCCCTACA
CCCTCCGCAACAATAACCAGCGAAAGCACAATCAACGACCAGAATGCAGG
TTCGCTCATTACGTCTCAGCAATGCTTAAAAGACAAGACCTGTCTTCCCA
TAGGCACAAATTCTGTTTGGTCTGCACTCGGCCGCGTTCGTCCCATTACG
CCTGCGCTTCGCCCCAAATATTTGTTCATAACAGCACCGATGGATTCCTA
TGCGTTTTTCCCGCAGTTTGGAACGGGCGCTGGAGCAGAAATAGCATCCT
TAGCCGTCCTCATGGCTGTTTCGGCACAGGTGGCAGTCTTTTGGCGTGAC
AGCGAAAGACAAAGCGCTTTCGAACGCCAACCTGTATACATTGCCTTCAA
CGCAGAGACATGGGGTTACGCCGGCTCTTCAAGGTTTTTGAGGGATATGA
TGGAGTTTAATTGCACCGAAGAAGCTGATTTTACCAAAGGTGAAAAGGGA
TGCAACCAGCCTTTCATCGACAATCTCAAGTTCAAGGAATTCAAGGACGC
CGATATCCAGGTGCTTAACATTGGACAGTTGATTACACCAGCCACTACAA
CCGAAGGCATGTCCGATTCAAATTTCTTCGCCCATTATGAAAATGGTACA
AGTACAATGCTCGAATCAGATTTGAGAAACTCTTTTGAGCAGCGCAAACT
TGAATTTCAGCGAGGTGGATTCGATTATGGCTCAGACGTACCATTAACTC
CAATTGATGCATCACAAAGCTTCAAGTTCTATTTCAAAGATAGAAAAATC
GACGTTGTGAGCATTACCAACTATCCTTTAAATTTCAGCACGGAAATATA
CCATTCTGCGTTGGATACTAAACTAAGGATAAGTCGTGACGGCCAGCGGG
GATCAATGTACGAGGCTGCGCATGCCATCGCATCAGCAGTGGTTTCCATC
GCCTTAAAAAAGTCCAGAAGTGTCCAAGTCAACACAACTATTATTGACAA
CGTCATCACTTGCATGACTGGCAACTGGACAAATTGTCCTATGATCCAGG
AGTACTTGGGAGAGGACTACGAAAACATTATAGTCGAGCCTGGAAACTAT
GCTGGTCCTTTCTTTCCTGCTAAGGTTCTTCGATATAACAACCCTAGCGC
TGCAGGTAAGCTGGCACTGGTTCGAGCATTTTTCGCTCATCACAACAGGT
TCACAGAGAGCACTGTGAAATGTGCCCGTGAAACAGATTGTGCTGGCTAT
AATCGAGATATCAACGAGGAAGAATCTCCAAAAAGTCAGTCTGATCTGCT
TGATGCCCAATGCACTCGCGGGCGATGTGTAGTCTCAGACACGTACAGCC
ATAGGGCATTTGGAGGTGGAATTAATATGGTTGACCCGAAAGGAGTCTTT
GAACTCGAAAAGAAATACGCGAGGGAAAGCTTTGATGGTAATAACCCCCG
GCAAGGAGACTGGGCGGAAAGCTTTTGGGATCCTGACACTGGATTTTGTG
AACAAGTCAGAGATAGCATCATTTACGAGGCTGTCGTATTCGGTGTGGGA
TTGTGCGTCCTTGTCTTGAGCTTTGGTTTCGGCATCTGGCTTGACCGTGC
CTTGTTTGAGGATAAAACTCTGGTGACAGGCGAGGAATCAAGCATTTCAA
GCATAGGAGAGCTTCTGATAGCACCTGTCTAA
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protein sequence of Gchil828.t1

>Gchil828.t1 ID=Gchil828.t1|Name=Gchil828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=794bp
MLPTNRGASFSAALALFLCLHLTTITTISAVTLERLSRFRRRCYSNLPMC
IMQSNNASSRGCGQCDADIREAPLRHARNVVELRQIERQTERAIVLVPER
VFFSVKVRSSIRFLPKFAALIVYRGPPERPDEFVDEAVSNETLDPLFNYS
LEESEPNRLYNFYGDIGSEEQCNQSNPRRNNPGDCILQQFIPFNVFHINS
SFAGHILQSAARFRDPNAIPDTEQKDTFSPQYKLQSIGRMWACATSMTPT
PSATITSESTINDQNAGSLITSQQCLKDKTCLPIGTNSVWSALGRVRPIT
PALRPKYLFITAPMDSYAFFPQFGTGAGAEIASLAVLMAVSAQVAVFWRD
SERQSAFERQPVYIAFNAETWGYAGSSRFLRDMMEFNCTEEADFTKGEKG
CNQPFIDNLKFKEFKDADIQVLNIGQLITPATTTEGMSDSNFFAHYENGT
STMLESDLRNSFEQRKLEFQRGGFDYGSDVPLTPIDASQSFKFYFKDRKI
DVVSITNYPLNFSTEIYHSALDTKLRISRDGQRGSMYEAAHAIASAVVSI
ALKKSRSVQVNTTIIDNVITCMTGNWTNCPMIQEYLGEDYENIIVEPGNY
AGPFFPAKVLRYNNPSAAGKLALVRAFFAHHNRFTESTVKCARETDCAGY
NRDINEEESPKSQSDLLDAQCTRGRCVVSDTYSHRAFGGGINMVDPKGVF
ELEKKYARESFDGNNPRQGDWAESFWDPDTGFCEQVRDSIIYEAVVFGVG
LCVLVLSFGFGIWLDRALFEDKTLVTGEESSISSIGELLIAPV*
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mRNA from alignment at tig00000017_pilon:118632..121013-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil828.t1 ID=Gchil828.t1|Name=Gchil828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2382bp|location=Sequence derived from alignment at tig00000017_pilon:118632..121013- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCCCCACCAACCGCGGTGCGTCGTTCTCCGCCGCACTCGCCTTGTT
TCTGTGCCTGCATCTCACCACCATCACCACCATCAGCGCCGTCACCCTCG
AAAGGCTCAGCCGCTTTCGCCGCAGGTGCTACTCAAACCTGCCCATGTGC
ATCATGCAAAGCAACAATGCCTCCTCCCGCGGATGCGGTCAGTGCGACGC
AGACATTCGCGAGGCCCCCCTGCGCCATGCGCGAAACGTGGTAGAGCTGC
GCCAGATCGAACGCCAGACGGAAAGAGCCATCGTTCTCGTTCCCGAGCGC
GTCTTTTTCTCAGTTAAGGTCAGGTCCAGCATCAGGTTTTTGCCCAAGTT
TGCAGCTCTCATCGTGTACAGAGGACCCCCCGAGCGCCCGGATGAATTTG
TCGACGAAGCCGTTTCCAACGAAACACTCGACCCCCTTTTCAACTACTCG
CTTGAGGAATCGGAACCCAATCGATTGTACAACTTTTACGGCGATATAGG
TTCGGAGGAGCAGTGCAATCAGAGTAATCCGCGTCGCAACAACCCGGGTG
ACTGCATTCTTCAGCAATTCATCCCCTTCAACGTTTTCCACATCAATTCC
TCTTTTGCCGGCCACATTCTCCAGTCGGCTGCTCGATTTCGTGATCCTAA
CGCCATACCCGACACTGAACAGAAAGACACCTTTTCCCCTCAATATAAAC
TTCAATCCATTGGTAGAATGTGGGCATGCGCAACCAGCATGACCCCTACA
CCCTCCGCAACAATAACCAGCGAAAGCACAATCAACGACCAGAATGCAGG
TTCGCTCATTACGTCTCAGCAATGCTTAAAAGACAAGACCTGTCTTCCCA
TAGGCACAAATTCTGTTTGGTCTGCACTCGGCCGCGTTCGTCCCATTACG
CCTGCGCTTCGCCCCAAATATTTGTTCATAACAGCACCGATGGATTCCTA
TGCGTTTTTCCCGCAGTTTGGAACGGGCGCTGGAGCAGAAATAGCATCCT
TAGCCGTCCTCATGGCTGTTTCGGCACAGGTGGCAGTCTTTTGGCGTGAC
AGCGAAAGACAAAGCGCTTTCGAACGCCAACCTGTATACATTGCCTTCAA
CGCAGAGACATGGGGTTACGCCGGCTCTTCAAGGTTTTTGAGGGATATGA
TGGAGTTTAATTGCACCGAAGAAGCTGATTTTACCAAAGGTGAAAAGGGA
TGCAACCAGCCTTTCATCGACAATCTCAAGTTCAAGGAATTCAAGGACGC
CGATATCCAGGTGCTTAACATTGGACAGTTGATTACACCAGCCACTACAA
CCGAAGGCATGTCCGATTCAAATTTCTTCGCCCATTATGAAAATGGTACA
AGTACAATGCTCGAATCAGATTTGAGAAACTCTTTTGAGCAGCGCAAACT
TGAATTTCAGCGAGGTGGATTCGATTATGGCTCAGACGTACCATTAACTC
CAATTGATGCATCACAAAGCTTCAAGTTCTATTTCAAAGATAGAAAAATC
GACGTTGTGAGCATTACCAACTATCCTTTAAATTTCAGCACGGAAATATA
CCATTCTGCGTTGGATACTAAACTAAGGATAAGTCGTGACGGCCAGCGGG
GATCAATGTACGAGGCTGCGCATGCCATCGCATCAGCAGTGGTTTCCATC
GCCTTAAAAAAGTCCAGAAGTGTCCAAGTCAACACAACTATTATTGACAA
CGTCATCACTTGCATGACTGGCAACTGGACAAATTGTCCTATGATCCAGG
AGTACTTGGGAGAGGACTACGAAAACATTATAGTCGAGCCTGGAAACTAT
GCTGGTCCTTTCTTTCCTGCTAAGGTTCTTCGATATAACAACCCTAGCGC
TGCAGGTAAGCTGGCACTGGTTCGAGCATTTTTCGCTCATCACAACAGGT
TCACAGAGAGCACTGTGAAATGTGCCCGTGAAACAGATTGTGCTGGCTAT
AATCGAGATATCAACGAGGAAGAATCTCCAAAAAGTCAGTCTGATCTGCT
TGATGCCCAATGCACTCGCGGGCGATGTGTAGTCTCAGACACGTACAGCC
ATAGGGCATTTGGAGGTGGAATTAATATGGTTGACCCGAAAGGAGTCTTT
GAACTCGAAAAGAAATACGCGAGGGAAAGCTTTGATGGTAATAACCCCCG
GCAAGGAGACTGGGCGGAAAGCTTTTGGGATCCTGACACTGGATTTTGTG
AACAAGTCAGAGATAGCATCATTTACGAGGCTGTCGTATTCGGTGTGGGA
TTGTGCGTCCTTGTCTTGAGCTTTGGTTTCGGCATCTGGCTTGACCGTGC
CTTGTTTGAGGATAAAACTCTGGTGACAGGCGAGGAATCAAGCATTTCAA
GCATAGGAGAGCTTCTGATAGCACCTGTCTAA
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Coding sequence (CDS) from alignment at tig00000017_pilon:118632..121013-

>Gchil828.t1 ID=Gchil828.t1|Name=Gchil828.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2382bp|location=Sequence derived from alignment at tig00000017_pilon:118632..121013- (Gracilaria chilensis NLEC103_M9 male)
ATGCTCCCCACCAACCGCGGTGCGTCGTTCTCCGCCGCACTCGCCTTGTT
TCTGTGCCTGCATCTCACCACCATCACCACCATCAGCGCCGTCACCCTCG
AAAGGCTCAGCCGCTTTCGCCGCAGGTGCTACTCAAACCTGCCCATGTGC
ATCATGCAAAGCAACAATGCCTCCTCCCGCGGATGCGGTCAGTGCGACGC
AGACATTCGCGAGGCCCCCCTGCGCCATGCGCGAAACGTGGTAGAGCTGC
GCCAGATCGAACGCCAGACGGAAAGAGCCATCGTTCTCGTTCCCGAGCGC
GTCTTTTTCTCAGTTAAGGTCAGGTCCAGCATCAGGTTTTTGCCCAAGTT
TGCAGCTCTCATCGTGTACAGAGGACCCCCCGAGCGCCCGGATGAATTTG
TCGACGAAGCCGTTTCCAACGAAACACTCGACCCCCTTTTCAACTACTCG
CTTGAGGAATCGGAACCCAATCGATTGTACAACTTTTACGGCGATATAGG
TTCGGAGGAGCAGTGCAATCAGAGTAATCCGCGTCGCAACAACCCGGGTG
ACTGCATTCTTCAGCAATTCATCCCCTTCAACGTTTTCCACATCAATTCC
TCTTTTGCCGGCCACATTCTCCAGTCGGCTGCTCGATTTCGTGATCCTAA
CGCCATACCCGACACTGAACAGAAAGACACCTTTTCCCCTCAATATAAAC
TTCAATCCATTGGTAGAATGTGGGCATGCGCAACCAGCATGACCCCTACA
CCCTCCGCAACAATAACCAGCGAAAGCACAATCAACGACCAGAATGCAGG
TTCGCTCATTACGTCTCAGCAATGCTTAAAAGACAAGACCTGTCTTCCCA
TAGGCACAAATTCTGTTTGGTCTGCACTCGGCCGCGTTCGTCCCATTACG
CCTGCGCTTCGCCCCAAATATTTGTTCATAACAGCACCGATGGATTCCTA
TGCGTTTTTCCCGCAGTTTGGAACGGGCGCTGGAGCAGAAATAGCATCCT
TAGCCGTCCTCATGGCTGTTTCGGCACAGGTGGCAGTCTTTTGGCGTGAC
AGCGAAAGACAAAGCGCTTTCGAACGCCAACCTGTATACATTGCCTTCAA
CGCAGAGACATGGGGTTACGCCGGCTCTTCAAGGTTTTTGAGGGATATGA
TGGAGTTTAATTGCACCGAAGAAGCTGATTTTACCAAAGGTGAAAAGGGA
TGCAACCAGCCTTTCATCGACAATCTCAAGTTCAAGGAATTCAAGGACGC
CGATATCCAGGTGCTTAACATTGGACAGTTGATTACACCAGCCACTACAA
CCGAAGGCATGTCCGATTCAAATTTCTTCGCCCATTATGAAAATGGTACA
AGTACAATGCTCGAATCAGATTTGAGAAACTCTTTTGAGCAGCGCAAACT
TGAATTTCAGCGAGGTGGATTCGATTATGGCTCAGACGTACCATTAACTC
CAATTGATGCATCACAAAGCTTCAAGTTCTATTTCAAAGATAGAAAAATC
GACGTTGTGAGCATTACCAACTATCCTTTAAATTTCAGCACGGAAATATA
CCATTCTGCGTTGGATACTAAACTAAGGATAAGTCGTGACGGCCAGCGGG
GATCAATGTACGAGGCTGCGCATGCCATCGCATCAGCAGTGGTTTCCATC
GCCTTAAAAAAGTCCAGAAGTGTCCAAGTCAACACAACTATTATTGACAA
CGTCATCACTTGCATGACTGGCAACTGGACAAATTGTCCTATGATCCAGG
AGTACTTGGGAGAGGACTACGAAAACATTATAGTCGAGCCTGGAAACTAT
GCTGGTCCTTTCTTTCCTGCTAAGGTTCTTCGATATAACAACCCTAGCGC
TGCAGGTAAGCTGGCACTGGTTCGAGCATTTTTCGCTCATCACAACAGGT
TCACAGAGAGCACTGTGAAATGTGCCCGTGAAACAGATTGTGCTGGCTAT
AATCGAGATATCAACGAGGAAGAATCTCCAAAAAGTCAGTCTGATCTGCT
TGATGCCCAATGCACTCGCGGGCGATGTGTAGTCTCAGACACGTACAGCC
ATAGGGCATTTGGAGGTGGAATTAATATGGTTGACCCGAAAGGAGTCTTT
GAACTCGAAAAGAAATACGCGAGGGAAAGCTTTGATGGTAATAACCCCCG
GCAAGGAGACTGGGCGGAAAGCTTTTGGGATCCTGACACTGGATTTTGTG
AACAAGTCAGAGATAGCATCATTTACGAGGCTGTCGTATTCGGTGTGGGA
TTGTGCGTCCTTGTCTTGAGCTTTGGTTTCGGCATCTGGCTTGACCGTGC
CTTGTTTGAGGATAAAACTCTGGTGACAGGCGAGGAATCAAGCATTTCAA
GCATAGGAGAGCTTCTGATAGCACCTGTCTAA
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