Gchil8262.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8262.t1
Unique Name	Gchil8262.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	426

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:961070..962347 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX32675
Preferred name	AP3M2
PFAMs	Adap_comp_sub,Clat_adaptor_s
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12398,ko:K17969
KEGG Pathway	ko04137,ko04139,ko04142,map04137,map04139,map04142
GOs	GO:0000323,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005773,GO:0006605,GO:0006622,GO:0006623,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006897,GO:0006907,GO:0006928,GO:0006950,GO:0006996,GO:0007017,GO:0007018,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008055,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0008565,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009987,GO:0009991,GO:0010256,GO:0010259,GO:0010876,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0019915,GO:0030117,GO:0030119,GO:0030123,GO:0030705,GO:0031201,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033060,GO:0033365,GO:0033554,GO:0034613,GO:0042440,GO:0042441,GO:0042594,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043473,GO:0043474,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0044550,GO:0045184,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046903,GO:0046907,GO:0047496,GO:0048066,GO:0048069,GO:0048475,GO:0048489,GO:0048490,GO:0048856,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051235,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0061462,GO:0065007,GO:0065008,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072384,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0097479,GO:0097480,GO:0097708,GO:0098657,GO:0098796,GO:0098930,GO:0099003,GO:0099111,GO:0099514,GO:0099517,GO:0099518,GO:1901360,GO:1901362,GO:1901564,GO:1901576
Evalue	1.08e-85
EggNOG OGs	KOG2740@1\|root,KOG2740@2759\|Eukaryota
Description	anterograde synaptic vesicle transport
COG category	U
BRITE	ko00000,ko00001,ko03029,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8262	Gchil8262	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 961070..962347 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8262.t1.stop1	Gchil8262.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 961070..961072 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8262.t1.CDS1	Gchil8262.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 961070..962347 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8262.t1.exon1	Gchil8262.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 961070..962347 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8262.t1.start1	Gchil8262.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 962345..962347 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8262.t1	Gchil8262.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 961070..962347 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:961070..962347-
coding sequence from alignment at tig00004384_pilon:961070..962347-

mRNA sequence

>Gchil8262.t1 ID=Gchil8262.t1|Name=Gchil8262.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=426bp
MIHSILILNSASEVLIEKHYRGKLPRTDLSTSLPLLSTAKGAQINLHMNG
LTLIAITLTDTNPLFMSQFLTSLAETLVDYFGELNEHAIKDNFVTVYELL
DEMLDNGFPATLESNMLKELISPPSMLNRMFEQLGAEAAAPVNAPSLFSW
RRGNVSYAQNEVFVDVIETIDATFEAAHRRLSHVLVSGVVQVNSRLSGTP
DITMTVRSQAPFDDVCFHHAVRRERYLQSNVLSFVPPDGVFKLMGYTVRD
SRGVTLPIEVGSRFDFDVRAGTGSVSISLIPRFPVPYRDPKQPSLMLAQV
MSAAGAKSSSDVENIMTDVSVSIPFGDGVTGASLSANYGTVQFDSSSGMC
TWNVGVVARGKTPSLVGNVSLNAEVRNPQVVVSFRIPGFSASGVRVDSLD
IGGERYKYYKGLKCVTKAGCYEFRT*

spliced messenger RNA

>Gchil8262.t1 ID=Gchil8262.t1|Name=Gchil8262.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004384_pilon:961070..962347- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCACAGCATTCTAATTTTGAACTCGGCCTCCGAGGTTTTGATCGA
GAAGCACTATCGTGGAAAGCTTCCGCGAACCGATCTATCCACATCTCTTC
CGCTCTTATCGACTGCTAAAGGTGCTCAAATCAATCTGCATATGAATGGC
CTAACTCTAATCGCAATAACATTAACTGATACCAATCCGCTTTTCATGTC
GCAGTTTCTTACATCTCTGGCTGAGACTCTTGTGGATTATTTTGGTGAGC
TCAACGAGCATGCCATCAAGGATAACTTCGTCACTGTGTACGAACTTCTC
GATGAAATGCTAGACAATGGCTTCCCTGCCACGTTGGAATCAAATATGTT
AAAAGAGCTAATATCACCTCCCTCCATGCTGAATCGCATGTTTGAACAGC
TTGGAGCTGAAGCGGCAGCCCCTGTCAATGCCCCATCACTATTCTCATGG
CGACGGGGAAACGTATCATATGCTCAAAACGAAGTATTTGTGGACGTCAT
TGAAACAATTGACGCAACATTTGAAGCCGCCCACCGTCGTCTATCCCATG
TATTGGTCTCAGGTGTGGTTCAGGTTAATTCAAGGCTGTCCGGAACTCCT
GATATAACCATGACTGTTCGATCACAAGCACCGTTCGATGATGTTTGTTT
TCATCACGCAGTACGTCGAGAACGTTACCTGCAATCAAACGTGCTTTCGT
TTGTTCCACCAGATGGTGTATTTAAACTTATGGGATATACTGTGAGGGAT
TCTCGCGGAGTGACTTTACCCATTGAAGTGGGTTCTCGCTTCGACTTTGA
CGTTAGAGCTGGAACTGGTAGCGTATCGATTAGCCTCATACCCCGTTTTC
CTGTACCCTATCGCGACCCAAAGCAGCCAAGCCTGATGCTAGCCCAAGTA
ATGTCGGCTGCAGGGGCGAAGTCGTCATCTGATGTCGAAAACATAATGAC
TGATGTGTCCGTGAGCATTCCGTTTGGCGACGGTGTTACTGGTGCATCTC
TTAGCGCCAATTACGGAACAGTTCAGTTTGATTCTTCCAGCGGAATGTGC
ACTTGGAATGTCGGCGTGGTCGCGCGAGGGAAGACACCATCGCTTGTAGG
CAATGTGAGCTTGAATGCGGAGGTTCGGAATCCCCAGGTGGTAGTATCGT
TTAGAATACCTGGATTCTCGGCAAGTGGGGTTCGGGTTGATAGTCTCGAT
ATTGGTGGTGAACGATACAAGTACTACAAGGGATTGAAATGTGTCACAAA
AGCGGGTTGCTATGAGTTTCGGACGTAG

protein sequence of Gchil8262.t1

>Gchil8262.t1 ID=Gchil8262.t1|Name=Gchil8262.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=426bp
MIHSILILNSASEVLIEKHYRGKLPRTDLSTSLPLLSTAKGAQINLHMNG
LTLIAITLTDTNPLFMSQFLTSLAETLVDYFGELNEHAIKDNFVTVYELL
DEMLDNGFPATLESNMLKELISPPSMLNRMFEQLGAEAAAPVNAPSLFSW
RRGNVSYAQNEVFVDVIETIDATFEAAHRRLSHVLVSGVVQVNSRLSGTP
DITMTVRSQAPFDDVCFHHAVRRERYLQSNVLSFVPPDGVFKLMGYTVRD
SRGVTLPIEVGSRFDFDVRAGTGSVSISLIPRFPVPYRDPKQPSLMLAQV
MSAAGAKSSSDVENIMTDVSVSIPFGDGVTGASLSANYGTVQFDSSSGMC
TWNVGVVARGKTPSLVGNVSLNAEVRNPQVVVSFRIPGFSASGVRVDSLD
IGGERYKYYKGLKCVTKAGCYEFRT*

mRNA from alignment at tig00004384_pilon:961070..962347-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8262.t1 ID=Gchil8262.t1|Name=Gchil8262.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00004384_pilon:961070..962347- (Gracilaria chilensis NLEC103_M9 male)
ATGATCCACAGCATTCTAATTTTGAACTCGGCCTCCGAGGTTTTGATCGA
GAAGCACTATCGTGGAAAGCTTCCGCGAACCGATCTATCCACATCTCTTC
CGCTCTTATCGACTGCTAAAGGTGCTCAAATCAATCTGCATATGAATGGC
CTAACTCTAATCGCAATAACATTAACTGATACCAATCCGCTTTTCATGTC
GCAGTTTCTTACATCTCTGGCTGAGACTCTTGTGGATTATTTTGGTGAGC
TCAACGAGCATGCCATCAAGGATAACTTCGTCACTGTGTACGAACTTCTC
GATGAAATGCTAGACAATGGCTTCCCTGCCACGTTGGAATCAAATATGTT
AAAAGAGCTAATATCACCTCCCTCCATGCTGAATCGCATGTTTGAACAGC
TTGGAGCTGAAGCGGCAGCCCCTGTCAATGCCCCATCACTATTCTCATGG
CGACGGGGAAACGTATCATATGCTCAAAACGAAGTATTTGTGGACGTCAT
TGAAACAATTGACGCAACATTTGAAGCCGCCCACCGTCGTCTATCCCATG
TATTGGTCTCAGGTGTGGTTCAGGTTAATTCAAGGCTGTCCGGAACTCCT
GATATAACCATGACTGTTCGATCACAAGCACCGTTCGATGATGTTTGTTT
TCATCACGCAGTACGTCGAGAACGTTACCTGCAATCAAACGTGCTTTCGT
TTGTTCCACCAGATGGTGTATTTAAACTTATGGGATATACTGTGAGGGAT
TCTCGCGGAGTGACTTTACCCATTGAAGTGGGTTCTCGCTTCGACTTTGA
CGTTAGAGCTGGAACTGGTAGCGTATCGATTAGCCTCATACCCCGTTTTC
CTGTACCCTATCGCGACCCAAAGCAGCCAAGCCTGATGCTAGCCCAAGTA
ATGTCGGCTGCAGGGGCGAAGTCGTCATCTGATGTCGAAAACATAATGAC
TGATGTGTCCGTGAGCATTCCGTTTGGCGACGGTGTTACTGGTGCATCTC
TTAGCGCCAATTACGGAACAGTTCAGTTTGATTCTTCCAGCGGAATGTGC
ACTTGGAATGTCGGCGTGGTCGCGCGAGGGAAGACACCATCGCTTGTAGG
CAATGTGAGCTTGAATGCGGAGGTTCGGAATCCCCAGGTGGTAGTATCGT
TTAGAATACCTGGATTCTCGGCAAGTGGGGTTCGGGTTGATAGTCTCGAT
ATTGGTGGTGAACGATACAAGTACTACAAGGGATTGAAATGTGTCACAAA
AGCGGGTTGCTATGAGTTTCGGACGTAG

Coding sequence (CDS) from alignment at tig00004384_pilon:961070..962347-

>Gchil8262.t1 ID=Gchil8262.t1|Name=Gchil8262.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00004384_pilon:961070..962347- (Gracilaria chilensis NLEC103_M9 male)
ATGATCCACAGCATTCTAATTTTGAACTCGGCCTCCGAGGTTTTGATCGA
GAAGCACTATCGTGGAAAGCTTCCGCGAACCGATCTATCCACATCTCTTC
CGCTCTTATCGACTGCTAAAGGTGCTCAAATCAATCTGCATATGAATGGC
CTAACTCTAATCGCAATAACATTAACTGATACCAATCCGCTTTTCATGTC
GCAGTTTCTTACATCTCTGGCTGAGACTCTTGTGGATTATTTTGGTGAGC
TCAACGAGCATGCCATCAAGGATAACTTCGTCACTGTGTACGAACTTCTC
GATGAAATGCTAGACAATGGCTTCCCTGCCACGTTGGAATCAAATATGTT
AAAAGAGCTAATATCACCTCCCTCCATGCTGAATCGCATGTTTGAACAGC
TTGGAGCTGAAGCGGCAGCCCCTGTCAATGCCCCATCACTATTCTCATGG
CGACGGGGAAACGTATCATATGCTCAAAACGAAGTATTTGTGGACGTCAT
TGAAACAATTGACGCAACATTTGAAGCCGCCCACCGTCGTCTATCCCATG
TATTGGTCTCAGGTGTGGTTCAGGTTAATTCAAGGCTGTCCGGAACTCCT
GATATAACCATGACTGTTCGATCACAAGCACCGTTCGATGATGTTTGTTT
TCATCACGCAGTACGTCGAGAACGTTACCTGCAATCAAACGTGCTTTCGT
TTGTTCCACCAGATGGTGTATTTAAACTTATGGGATATACTGTGAGGGAT
TCTCGCGGAGTGACTTTACCCATTGAAGTGGGTTCTCGCTTCGACTTTGA
CGTTAGAGCTGGAACTGGTAGCGTATCGATTAGCCTCATACCCCGTTTTC
CTGTACCCTATCGCGACCCAAAGCAGCCAAGCCTGATGCTAGCCCAAGTA
ATGTCGGCTGCAGGGGCGAAGTCGTCATCTGATGTCGAAAACATAATGAC
TGATGTGTCCGTGAGCATTCCGTTTGGCGACGGTGTTACTGGTGCATCTC
TTAGCGCCAATTACGGAACAGTTCAGTTTGATTCTTCCAGCGGAATGTGC
ACTTGGAATGTCGGCGTGGTCGCGCGAGGGAAGACACCATCGCTTGTAGG
CAATGTGAGCTTGAATGCGGAGGTTCGGAATCCCCAGGTGGTAGTATCGT
TTAGAATACCTGGATTCTCGGCAAGTGGGGTTCGGGTTGATAGTCTCGAT
ATTGGTGGTGAACGATACAAGTACTACAAGGGATTGAAATGTGTCACAAA
AGCGGGTTGCTATGAGTTTCGGACGTAG