Gchil826.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil826.t1
Unique NameGchil826.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:113358..114464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil826Gchil826Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 113358..114464 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil826.t1.stop1Gchil826.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 113358..113360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil826.t1.CDS1Gchil826.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 113358..114464 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil826.t1.exon1Gchil826.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 113358..114464 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil826.t1.start1Gchil826.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 114462..114464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil826.t1Gchil826.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 113358..114464 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil826.t1 ID=Gchil826.t1|Name=Gchil826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=369bp
MDEQVVPSFNAPALAPAPAPALASARKPKAKVLRRSHTAKSDLSSLALHK
SALSPAEKPPLATVPNFSDSTSVPACQSSFVSPAAEYPGKRRWETPLRTG
KWAENWEGARELGLPVCVRSAQAPAVSQVIRSSVADAVVAYVGPHLPRHT
VEKWLCLLFEYLELNADEQVLVVCLLRRYVRHGGRFVGQGDWARPQRWEC
VVAVASYFAVLLSEEFPGRTAMDLRELLGPNFRFGSEQISFLKVLDWRIS
IEAEDFKEVKEVSQKIFEQDTVAKQTMNDWFQIDKAMAEAKRRVAEEAAA
AAAAAAAAMAHSPVPTVSKKRAYAAIVPADDSVVPRVVIPRLNGAHVHAV
PAAPTAFVPAIPHWVPHW*
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spliced messenger RNA

>Gchil826.t1 ID=Gchil826.t1|Name=Gchil826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000017_pilon:113358..114464- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGCAAGTCGTTCCGAGCTTCAACGCGCCCGCGCTCGCGCCCGC
GCCCGCGCCCGCGCTCGCATCTGCCCGAAAGCCAAAGGCCAAGGTACTGC
GACGAAGCCACACCGCCAAGTCCGACTTGTCGTCCCTGGCGCTTCACAAG
TCCGCGCTCTCCCCGGCAGAGAAGCCCCCCCTAGCCACTGTCCCCAACTT
CTCGGATTCTACGTCTGTTCCGGCTTGCCAGTCGTCCTTCGTGTCGCCTG
CAGCCGAATATCCAGGTAAACGTCGCTGGGAAACGCCTCTTCGCACGGGG
AAATGGGCCGAAAACTGGGAGGGCGCCCGGGAGCTTGGTCTGCCCGTTTG
CGTCCGCTCTGCACAGGCGCCTGCTGTCTCCCAGGTCATCCGCTCCTCGG
TTGCAGACGCTGTCGTGGCCTACGTTGGTCCGCATTTGCCGCGTCACACC
GTTGAAAAGTGGTTGTGCTTGCTCTTCGAGTATCTGGAGCTCAATGCTGA
CGAACAGGTGCTCGTTGTGTGCCTACTTCGCCGCTACGTGCGCCACGGCG
GTCGTTTCGTTGGTCAAGGTGACTGGGCTCGTCCGCAGCGTTGGGAATGC
GTCGTAGCTGTCGCCAGTTACTTTGCTGTGCTTCTCAGCGAAGAATTCCC
AGGCCGCACAGCAATGGATCTTCGCGAGCTGCTCGGCCCGAATTTCCGTT
TCGGATCTGAACAGATTTCCTTCCTCAAGGTTCTCGACTGGCGCATCTCC
ATCGAGGCCGAAGACTTCAAGGAGGTCAAAGAAGTCTCGCAAAAGATATT
CGAACAAGACACTGTTGCGAAGCAAACCATGAACGATTGGTTCCAGATTG
ATAAAGCCATGGCTGAGGCTAAGCGCCGAGTGGCTGAGGAAGCCGCTGCA
GCCGCCGCTGCAGCCGCCGCCGCAATGGCTCACAGCCCGGTGCCTACTGT
CAGCAAGAAGCGCGCTTACGCTGCGATTGTTCCCGCTGATGATTCCGTTG
TTCCCCGAGTTGTTATCCCGCGCTTGAATGGTGCTCATGTTCATGCTGTT
CCTGCTGCCCCCACCGCGTTTGTTCCTGCCATCCCACATTGGGTGCCACA
TTGGTAA
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protein sequence of Gchil826.t1

>Gchil826.t1 ID=Gchil826.t1|Name=Gchil826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=369bp
MDEQVVPSFNAPALAPAPAPALASARKPKAKVLRRSHTAKSDLSSLALHK
SALSPAEKPPLATVPNFSDSTSVPACQSSFVSPAAEYPGKRRWETPLRTG
KWAENWEGARELGLPVCVRSAQAPAVSQVIRSSVADAVVAYVGPHLPRHT
VEKWLCLLFEYLELNADEQVLVVCLLRRYVRHGGRFVGQGDWARPQRWEC
VVAVASYFAVLLSEEFPGRTAMDLRELLGPNFRFGSEQISFLKVLDWRIS
IEAEDFKEVKEVSQKIFEQDTVAKQTMNDWFQIDKAMAEAKRRVAEEAAA
AAAAAAAAMAHSPVPTVSKKRAYAAIVPADDSVVPRVVIPRLNGAHVHAV
PAAPTAFVPAIPHWVPHW*
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mRNA from alignment at tig00000017_pilon:113358..114464-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil826.t1 ID=Gchil826.t1|Name=Gchil826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at tig00000017_pilon:113358..114464- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGCAAGTCGTTCCGAGCTTCAACGCGCCCGCGCTCGCGCCCGC
GCCCGCGCCCGCGCTCGCATCTGCCCGAAAGCCAAAGGCCAAGGTACTGC
GACGAAGCCACACCGCCAAGTCCGACTTGTCGTCCCTGGCGCTTCACAAG
TCCGCGCTCTCCCCGGCAGAGAAGCCCCCCCTAGCCACTGTCCCCAACTT
CTCGGATTCTACGTCTGTTCCGGCTTGCCAGTCGTCCTTCGTGTCGCCTG
CAGCCGAATATCCAGGTAAACGTCGCTGGGAAACGCCTCTTCGCACGGGG
AAATGGGCCGAAAACTGGGAGGGCGCCCGGGAGCTTGGTCTGCCCGTTTG
CGTCCGCTCTGCACAGGCGCCTGCTGTCTCCCAGGTCATCCGCTCCTCGG
TTGCAGACGCTGTCGTGGCCTACGTTGGTCCGCATTTGCCGCGTCACACC
GTTGAAAAGTGGTTGTGCTTGCTCTTCGAGTATCTGGAGCTCAATGCTGA
CGAACAGGTGCTCGTTGTGTGCCTACTTCGCCGCTACGTGCGCCACGGCG
GTCGTTTCGTTGGTCAAGGTGACTGGGCTCGTCCGCAGCGTTGGGAATGC
GTCGTAGCTGTCGCCAGTTACTTTGCTGTGCTTCTCAGCGAAGAATTCCC
AGGCCGCACAGCAATGGATCTTCGCGAGCTGCTCGGCCCGAATTTCCGTT
TCGGATCTGAACAGATTTCCTTCCTCAAGGTTCTCGACTGGCGCATCTCC
ATCGAGGCCGAAGACTTCAAGGAGGTCAAAGAAGTCTCGCAAAAGATATT
CGAACAAGACACTGTTGCGAAGCAAACCATGAACGATTGGTTCCAGATTG
ATAAAGCCATGGCTGAGGCTAAGCGCCGAGTGGCTGAGGAAGCCGCTGCA
GCCGCCGCTGCAGCCGCCGCCGCAATGGCTCACAGCCCGGTGCCTACTGT
CAGCAAGAAGCGCGCTTACGCTGCGATTGTTCCCGCTGATGATTCCGTTG
TTCCCCGAGTTGTTATCCCGCGCTTGAATGGTGCTCATGTTCATGCTGTT
CCTGCTGCCCCCACCGCGTTTGTTCCTGCCATCCCACATTGGGTGCCACA
TTGGTAA
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Coding sequence (CDS) from alignment at tig00000017_pilon:113358..114464-

>Gchil826.t1 ID=Gchil826.t1|Name=Gchil826.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1107bp|location=Sequence derived from alignment at tig00000017_pilon:113358..114464- (Gracilaria chilensis NLEC103_M9 male)
ATGGACGAGCAAGTCGTTCCGAGCTTCAACGCGCCCGCGCTCGCGCCCGC
GCCCGCGCCCGCGCTCGCATCTGCCCGAAAGCCAAAGGCCAAGGTACTGC
GACGAAGCCACACCGCCAAGTCCGACTTGTCGTCCCTGGCGCTTCACAAG
TCCGCGCTCTCCCCGGCAGAGAAGCCCCCCCTAGCCACTGTCCCCAACTT
CTCGGATTCTACGTCTGTTCCGGCTTGCCAGTCGTCCTTCGTGTCGCCTG
CAGCCGAATATCCAGGTAAACGTCGCTGGGAAACGCCTCTTCGCACGGGG
AAATGGGCCGAAAACTGGGAGGGCGCCCGGGAGCTTGGTCTGCCCGTTTG
CGTCCGCTCTGCACAGGCGCCTGCTGTCTCCCAGGTCATCCGCTCCTCGG
TTGCAGACGCTGTCGTGGCCTACGTTGGTCCGCATTTGCCGCGTCACACC
GTTGAAAAGTGGTTGTGCTTGCTCTTCGAGTATCTGGAGCTCAATGCTGA
CGAACAGGTGCTCGTTGTGTGCCTACTTCGCCGCTACGTGCGCCACGGCG
GTCGTTTCGTTGGTCAAGGTGACTGGGCTCGTCCGCAGCGTTGGGAATGC
GTCGTAGCTGTCGCCAGTTACTTTGCTGTGCTTCTCAGCGAAGAATTCCC
AGGCCGCACAGCAATGGATCTTCGCGAGCTGCTCGGCCCGAATTTCCGTT
TCGGATCTGAACAGATTTCCTTCCTCAAGGTTCTCGACTGGCGCATCTCC
ATCGAGGCCGAAGACTTCAAGGAGGTCAAAGAAGTCTCGCAAAAGATATT
CGAACAAGACACTGTTGCGAAGCAAACCATGAACGATTGGTTCCAGATTG
ATAAAGCCATGGCTGAGGCTAAGCGCCGAGTGGCTGAGGAAGCCGCTGCA
GCCGCCGCTGCAGCCGCCGCCGCAATGGCTCACAGCCCGGTGCCTACTGT
CAGCAAGAAGCGCGCTTACGCTGCGATTGTTCCCGCTGATGATTCCGTTG
TTCCCCGAGTTGTTATCCCGCGCTTGAATGGTGCTCATGTTCATGCTGTT
CCTGCTGCCCCCACCGCGTTTGTTCCTGCCATCCCACATTGGGTGCCACA
TTGGTAA
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