Gchil8259.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8259.t1
Unique NameGchil8259.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:921750..922805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4098.XP_009611806.1
PFAMsAldo_ket_red
Max annot lvl35493|Streptophyta
KEGG rclassRC00116
KEGG koko:K05275
KEGG ReactionR01708
KEGG Pathwayko00750,ko01100,ko01120,map00750,map01100,map01120
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004033,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009443,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0009987,GO:0010287,GO:0016020,GO:0016491,GO:0016614,GO:0016616,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0036094,GO:0042364,GO:0042651,GO:0042816,GO:0042817,GO:0042819,GO:0042821,GO:0042822,GO:0042823,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0048037,GO:0050236,GO:0050661,GO:0050662,GO:0051186,GO:0051188,GO:0055035,GO:0055114,GO:0070402,GO:0071704,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Evalue1.7e-83
EggNOG OGsCOG0667@1|root,KOG1575@2759|Eukaryota,37PX2@33090|Viridiplantae,3GGB7@35493|Streptophyta,44EZB@71274|asterids
EC1.1.1.65
DescriptionAldo/keto reductase family
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8259Gchil8259Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 921750..922805 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8259.t1.start1Gchil8259.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 921750..921752 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8259.t1.CDS1Gchil8259.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 921750..922805 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8259.t1.exon1Gchil8259.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 921750..922805 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8259.t1.stop1Gchil8259.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 922803..922805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8259.t1Gchil8259.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 921750..922805 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8259.t1 ID=Gchil8259.t1|Name=Gchil8259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=352bp
MATFVPPAALSAIKTRSVSCQRREQRQEIWKGTLANNGQHDVAGLSPDCP
LAVGTWAWGNRLLYDYSPSQDDDIRRAFITAVNNGVSLFDTADSYGTGKL
NARAEVLLGRFMKEYGKPVRVATKFASYPWRFTARSIVNAAEKSCERLGT
KIYLAQMHWSPSRYLPLQERALLQGLYEAWKAGYCENIGVSNLGPIALTR
AHKFLNDRGASLKSVQVQMSLLCREPIESGLLQVADNLGVSVIGYSPLCL
GRLAGVSRSGIRGILFDRLKNDRLDAALRDIAMRKGASVAQVALSWCLKK
GVIVLVGCRTESQVIENLGALQVDLSDENSRLLEEAACKGSQMVRNAFQT
V*
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spliced messenger RNA

>Gchil8259.t1 ID=Gchil8259.t1|Name=Gchil8259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004384_pilon:921750..922805+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACTTTCGTTCCCCCCGCGGCGTTGTCTGCGATAAAAACACGGAG
CGTTAGTTGCCAACGGCGAGAGCAACGCCAAGAGATTTGGAAAGGCACAC
TGGCCAACAATGGGCAACATGATGTGGCTGGACTTTCACCTGATTGTCCT
CTTGCAGTCGGAACGTGGGCGTGGGGAAATCGCCTACTCTACGACTATTC
GCCGTCTCAGGATGATGACATCAGGAGAGCATTTATTACCGCGGTGAATA
ATGGAGTATCACTCTTCGACACAGCAGATTCGTATGGAACAGGCAAACTG
AACGCAAGAGCCGAGGTGTTATTGGGAAGGTTTATGAAAGAATATGGAAA
ACCAGTTCGAGTGGCCACAAAGTTTGCTTCATATCCGTGGCGATTCACAG
CGCGCTCTATCGTGAATGCGGCGGAAAAAAGTTGCGAGCGATTAGGAACG
AAGATTTATCTCGCACAGATGCACTGGTCACCTTCGCGATACCTGCCTCT
ACAGGAGAGAGCTCTTTTGCAGGGCTTATACGAGGCTTGGAAAGCGGGGT
ATTGCGAGAACATAGGAGTATCGAACTTGGGCCCTATCGCTTTGACCAGA
GCACACAAGTTTTTGAACGACCGTGGAGCCAGTTTAAAGAGTGTCCAAGT
TCAGATGTCGTTGCTTTGCAGAGAACCGATTGAAAGCGGGTTGCTACAAG
TGGCAGACAATCTTGGGGTAAGCGTGATTGGGTACTCTCCTCTATGTCTT
GGGCGTTTGGCGGGAGTGTCACGCTCCGGCATCAGAGGAATATTGTTCGA
TAGATTGAAAAATGATAGATTAGATGCAGCATTGCGGGATATAGCGATGC
GAAAGGGAGCGAGCGTGGCGCAAGTGGCTTTGAGCTGGTGTTTGAAGAAA
GGCGTGATTGTCTTGGTGGGCTGTCGGACTGAATCTCAGGTTATAGAGAA
TTTGGGCGCATTACAGGTTGATTTGAGTGATGAAAACAGCAGATTGCTCG
AGGAAGCAGCTTGCAAAGGCTCACAGATGGTTCGCAATGCATTCCAGACT
GTATGA
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protein sequence of Gchil8259.t1

>Gchil8259.t1 ID=Gchil8259.t1|Name=Gchil8259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MATFVPPAALSAIKTRSVSCQRREQRQEIWKGTLANNGQHDVAGLSPDCP
LAVGTWAWGNRLLYDYSPSQDDDIRRAFITAVNNGVSLFDTADSYGTGKL
NARAEVLLGRFMKEYGKPVRVATKFASYPWRFTARSIVNAAEKSCERLGT
KIYLAQMHWSPSRYLPLQERALLQGLYEAWKAGYCENIGVSNLGPIALTR
AHKFLNDRGASLKSVQVQMSLLCREPIESGLLQVADNLGVSVIGYSPLCL
GRLAGVSRSGIRGILFDRLKNDRLDAALRDIAMRKGASVAQVALSWCLKK
GVIVLVGCRTESQVIENLGALQVDLSDENSRLLEEAACKGSQMVRNAFQT
V*
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mRNA from alignment at tig00004384_pilon:921750..922805+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8259.t1 ID=Gchil8259.t1|Name=Gchil8259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004384_pilon:921750..922805+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACTTTCGTTCCCCCCGCGGCGTTGTCTGCGATAAAAACACGGAG
CGTTAGTTGCCAACGGCGAGAGCAACGCCAAGAGATTTGGAAAGGCACAC
TGGCCAACAATGGGCAACATGATGTGGCTGGACTTTCACCTGATTGTCCT
CTTGCAGTCGGAACGTGGGCGTGGGGAAATCGCCTACTCTACGACTATTC
GCCGTCTCAGGATGATGACATCAGGAGAGCATTTATTACCGCGGTGAATA
ATGGAGTATCACTCTTCGACACAGCAGATTCGTATGGAACAGGCAAACTG
AACGCAAGAGCCGAGGTGTTATTGGGAAGGTTTATGAAAGAATATGGAAA
ACCAGTTCGAGTGGCCACAAAGTTTGCTTCATATCCGTGGCGATTCACAG
CGCGCTCTATCGTGAATGCGGCGGAAAAAAGTTGCGAGCGATTAGGAACG
AAGATTTATCTCGCACAGATGCACTGGTCACCTTCGCGATACCTGCCTCT
ACAGGAGAGAGCTCTTTTGCAGGGCTTATACGAGGCTTGGAAAGCGGGGT
ATTGCGAGAACATAGGAGTATCGAACTTGGGCCCTATCGCTTTGACCAGA
GCACACAAGTTTTTGAACGACCGTGGAGCCAGTTTAAAGAGTGTCCAAGT
TCAGATGTCGTTGCTTTGCAGAGAACCGATTGAAAGCGGGTTGCTACAAG
TGGCAGACAATCTTGGGGTAAGCGTGATTGGGTACTCTCCTCTATGTCTT
GGGCGTTTGGCGGGAGTGTCACGCTCCGGCATCAGAGGAATATTGTTCGA
TAGATTGAAAAATGATAGATTAGATGCAGCATTGCGGGATATAGCGATGC
GAAAGGGAGCGAGCGTGGCGCAAGTGGCTTTGAGCTGGTGTTTGAAGAAA
GGCGTGATTGTCTTGGTGGGCTGTCGGACTGAATCTCAGGTTATAGAGAA
TTTGGGCGCATTACAGGTTGATTTGAGTGATGAAAACAGCAGATTGCTCG
AGGAAGCAGCTTGCAAAGGCTCACAGATGGTTCGCAATGCATTCCAGACT
GTATGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:921750..922805+

>Gchil8259.t1 ID=Gchil8259.t1|Name=Gchil8259.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00004384_pilon:921750..922805+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAACTTTCGTTCCCCCCGCGGCGTTGTCTGCGATAAAAACACGGAG
CGTTAGTTGCCAACGGCGAGAGCAACGCCAAGAGATTTGGAAAGGCACAC
TGGCCAACAATGGGCAACATGATGTGGCTGGACTTTCACCTGATTGTCCT
CTTGCAGTCGGAACGTGGGCGTGGGGAAATCGCCTACTCTACGACTATTC
GCCGTCTCAGGATGATGACATCAGGAGAGCATTTATTACCGCGGTGAATA
ATGGAGTATCACTCTTCGACACAGCAGATTCGTATGGAACAGGCAAACTG
AACGCAAGAGCCGAGGTGTTATTGGGAAGGTTTATGAAAGAATATGGAAA
ACCAGTTCGAGTGGCCACAAAGTTTGCTTCATATCCGTGGCGATTCACAG
CGCGCTCTATCGTGAATGCGGCGGAAAAAAGTTGCGAGCGATTAGGAACG
AAGATTTATCTCGCACAGATGCACTGGTCACCTTCGCGATACCTGCCTCT
ACAGGAGAGAGCTCTTTTGCAGGGCTTATACGAGGCTTGGAAAGCGGGGT
ATTGCGAGAACATAGGAGTATCGAACTTGGGCCCTATCGCTTTGACCAGA
GCACACAAGTTTTTGAACGACCGTGGAGCCAGTTTAAAGAGTGTCCAAGT
TCAGATGTCGTTGCTTTGCAGAGAACCGATTGAAAGCGGGTTGCTACAAG
TGGCAGACAATCTTGGGGTAAGCGTGATTGGGTACTCTCCTCTATGTCTT
GGGCGTTTGGCGGGAGTGTCACGCTCCGGCATCAGAGGAATATTGTTCGA
TAGATTGAAAAATGATAGATTAGATGCAGCATTGCGGGATATAGCGATGC
GAAAGGGAGCGAGCGTGGCGCAAGTGGCTTTGAGCTGGTGTTTGAAGAAA
GGCGTGATTGTCTTGGTGGGCTGTCGGACTGAATCTCAGGTTATAGAGAA
TTTGGGCGCATTACAGGTTGATTTGAGTGATGAAAACAGCAGATTGCTCG
AGGAAGCAGCTTGCAAAGGCTCACAGATGGTTCGCAATGCATTCCAGACT
GTATGA
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