Gchil8257.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8257.t1
Unique Name	Gchil8257.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:918651..919772 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102232.GLO73106DRAFT_00012600
PFAMs	CpcD,PBS_linker_poly
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K05378
KEGG Pathway	ko00196,ko01100,map00196,map01100
Evalue	6.04e-64
EggNOG OGs	COG0448@1\|root,COG0448@2\|Bacteria,1GQ2C@1117\|Cyanobacteria
Description	Belongs to the phycobilisome linker protein family
COG category	G
BRITE	ko00000,ko00001,ko00194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8257	Gchil8257	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 918651..919772 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8257.t1.start1	Gchil8257.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 918651..918653 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8257.t1.CDS1	Gchil8257.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 918651..919772 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8257.t1.exon1	Gchil8257.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 918651..919772 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8257.t1.stop1	Gchil8257.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 919770..919772 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8257.t1	Gchil8257.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 918651..919772 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:918651..919772+
coding sequence from alignment at tig00004384_pilon:918651..919772+

mRNA sequence

>Gchil8257.t1 ID=Gchil8257.t1|Name=Gchil8257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=374bp
MAFVPVLSLRPAAAPAASSFTGTSLRNVVSAVPARFTARLGTVLGNSSLD
KLGLDKFTERFVIPESGRPDGFSADYEVYIQAVYRQVFGNAYIMESERDE
FKKLESEFRDLRLTVKDFCRALGKTYQYRKRFFEGRPLYGAIELNFKHFL
GRTPDGLEQYRAKSAVYDSQGYDAFIDAFFDDGEYDAFFDEYCVPYYRGH
LTSSNLSMTAFTHMFQLVRGASTSDKANPRTMTNKITLNQAGIQKIPLAV
IAPGADGATFLAPDASSGSWQNGFSGLTMARTSHGARQQGGKMYRIEATS
FSQGGATNGSAGVTLRSRTGRFYKRKNASSGSKLSDYRRANAVYLVPFSE
LSATYVKIHKNGGVIASITPVSG*

spliced messenger RNA

>Gchil8257.t1 ID=Gchil8257.t1|Name=Gchil8257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004384_pilon:918651..919772+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTTCCCGTGCTTTCCTTGCGTCCTGCCGCTGCGCCGGCTGC
CTCCTCTTTCACTGGGACATCCTTGCGAAATGTCGTTTCAGCTGTTCCAG
CCCGTTTCACCGCCCGCCTCGGAACTGTGCTCGGTAACTCCTCCTTGGAC
AAGCTCGGTCTCGATAAATTCACGGAGCGTTTTGTAATCCCGGAGAGTGG
GAGGCCAGATGGCTTCTCCGCCGATTACGAGGTTTACATTCAGGCCgtct
atcgtcaagtgttcggcaatgcctacatcatggaATCCGAACGCGACGAG
TTCAAGAAGCTCGAGTCGGAGTTTCGTGATTTGCGTCTAACTGTGAAGGA
CTTCTGTCGAGCTCTGGGCAAGACGTACCAGTATCGCAAGCGATTCTTTG
AGGGTCGTCCTCTTTATGGTGCGATTGAACTCAATTTCAAGCATTTCCTC
GGGCGCACTCCGGACGGCCTGGAGCAATACAGAGCCAAGTCTGCTGTTTA
TGATTCCCAAGGGTACGATGCTTTCATTGATGCTTTCTTCGATGACGGAG
AGTATGATGCCTTCTTTGATGAGTACTGTGTGCCGTACTACCGTGGGCAC
CTTACTTCATCAAATCTGTCTATGACTGCCTTCACACACATGTTCCAACT
TGTCCGCGGCGCATCCACGTCTGATAAGGCCAATCCTCGCACCATGACTA
ACAAGATCACGCTCAATCAAGCTGGAATTCAAAAGATTCCGCTCGCTGTC
ATTGCCCCTGGAGCCGACGGTGCAACTTTCCTTGCTCCCGATGCTTCTTC
AGGTTCCTGGCAGAATGGGTTCTCTGGTCTTACTATGGCCAGAACTTCCC
ACGGTGCACGCCAGCAGGGAGGAAAGATGTACCGTATTGAAGCTACCAGC
TTCTCACAAGGAGGTGCCACTAATGGATCTGCTGGAGTGACACTACGCTC
TCGCACCGGCAGATTTTACAAGAGGAAGAACGCGAGCTCTGGAAGCAAGT
TGTCCGACTATCGCCGCGCCAACGCTGTTTATCTTGTTCCCTTTTCTGAG
CTTTCTGCCACCTATGTCAAGATTCACAAGAACGGCGGTGTGATTGCCAG
TATTACTCCGGTTTCCGGATAG

protein sequence of Gchil8257.t1

>Gchil8257.t1 ID=Gchil8257.t1|Name=Gchil8257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=374bp
MAFVPVLSLRPAAAPAASSFTGTSLRNVVSAVPARFTARLGTVLGNSSLD
KLGLDKFTERFVIPESGRPDGFSADYEVYIQAVYRQVFGNAYIMESERDE
FKKLESEFRDLRLTVKDFCRALGKTYQYRKRFFEGRPLYGAIELNFKHFL
GRTPDGLEQYRAKSAVYDSQGYDAFIDAFFDDGEYDAFFDEYCVPYYRGH
LTSSNLSMTAFTHMFQLVRGASTSDKANPRTMTNKITLNQAGIQKIPLAV
IAPGADGATFLAPDASSGSWQNGFSGLTMARTSHGARQQGGKMYRIEATS
FSQGGATNGSAGVTLRSRTGRFYKRKNASSGSKLSDYRRANAVYLVPFSE
LSATYVKIHKNGGVIASITPVSG*

mRNA from alignment at tig00004384_pilon:918651..919772+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8257.t1 ID=Gchil8257.t1|Name=Gchil8257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004384_pilon:918651..919772+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTTGTTCCCGTGCTTTCCTTGCGTCCTGCCGCTGCGCCGGCTGC
CTCCTCTTTCACTGGGACATCCTTGCGAAATGTCGTTTCAGCTGTTCCAG
CCCGTTTCACCGCCCGCCTCGGAACTGTGCTCGGTAACTCCTCCTTGGAC
AAGCTCGGTCTCGATAAATTCACGGAGCGTTTTGTAATCCCGGAGAGTGG
GAGGCCAGATGGCTTCTCCGCCGATTACGAGGTTTACATTCAGGCCgtct
atcgtcaagtgttcggcaatgcctacatcatggaATCCGAACGCGACGAG
TTCAAGAAGCTCGAGTCGGAGTTTCGTGATTTGCGTCTAACTGTGAAGGA
CTTCTGTCGAGCTCTGGGCAAGACGTACCAGTATCGCAAGCGATTCTTTG
AGGGTCGTCCTCTTTATGGTGCGATTGAACTCAATTTCAAGCATTTCCTC
GGGCGCACTCCGGACGGCCTGGAGCAATACAGAGCCAAGTCTGCTGTTTA
TGATTCCCAAGGGTACGATGCTTTCATTGATGCTTTCTTCGATGACGGAG
AGTATGATGCCTTCTTTGATGAGTACTGTGTGCCGTACTACCGTGGGCAC
CTTACTTCATCAAATCTGTCTATGACTGCCTTCACACACATGTTCCAACT
TGTCCGCGGCGCATCCACGTCTGATAAGGCCAATCCTCGCACCATGACTA
ACAAGATCACGCTCAATCAAGCTGGAATTCAAAAGATTCCGCTCGCTGTC
ATTGCCCCTGGAGCCGACGGTGCAACTTTCCTTGCTCCCGATGCTTCTTC
AGGTTCCTGGCAGAATGGGTTCTCTGGTCTTACTATGGCCAGAACTTCCC
ACGGTGCACGCCAGCAGGGAGGAAAGATGTACCGTATTGAAGCTACCAGC
TTCTCACAAGGAGGTGCCACTAATGGATCTGCTGGAGTGACACTACGCTC
TCGCACCGGCAGATTTTACAAGAGGAAGAACGCGAGCTCTGGAAGCAAGT
TGTCCGACTATCGCCGCGCCAACGCTGTTTATCTTGTTCCCTTTTCTGAG
CTTTCTGCCACCTATGTCAAGATTCACAAGAACGGCGGTGTGATTGCCAG
TATTACTCCGGTTTCCGGATAG

Coding sequence (CDS) from alignment at tig00004384_pilon:918651..919772+

>Gchil8257.t1 ID=Gchil8257.t1|Name=Gchil8257.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00004384_pilon:918651..919772+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTTGTTCCCGTGCTTTCCTTGCGTCCTGCCGCTGCGCCGGCTGC
CTCCTCTTTCACTGGGACATCCTTGCGAAATGTCGTTTCAGCTGTTCCAG
CCCGTTTCACCGCCCGCCTCGGAACTGTGCTCGGTAACTCCTCCTTGGAC
AAGCTCGGTCTCGATAAATTCACGGAGCGTTTTGTAATCCCGGAGAGTGG
GAGGCCAGATGGCTTCTCCGCCGATTACGAGGTTTACATTCAGGCCgtct
atcgtcaagtgttcggcaatgcctacatcatggaATCCGAACGCGACGAG
TTCAAGAAGCTCGAGTCGGAGTTTCGTGATTTGCGTCTAACTGTGAAGGA
CTTCTGTCGAGCTCTGGGCAAGACGTACCAGTATCGCAAGCGATTCTTTG
AGGGTCGTCCTCTTTATGGTGCGATTGAACTCAATTTCAAGCATTTCCTC
GGGCGCACTCCGGACGGCCTGGAGCAATACAGAGCCAAGTCTGCTGTTTA
TGATTCCCAAGGGTACGATGCTTTCATTGATGCTTTCTTCGATGACGGAG
AGTATGATGCCTTCTTTGATGAGTACTGTGTGCCGTACTACCGTGGGCAC
CTTACTTCATCAAATCTGTCTATGACTGCCTTCACACACATGTTCCAACT
TGTCCGCGGCGCATCCACGTCTGATAAGGCCAATCCTCGCACCATGACTA
ACAAGATCACGCTCAATCAAGCTGGAATTCAAAAGATTCCGCTCGCTGTC
ATTGCCCCTGGAGCCGACGGTGCAACTTTCCTTGCTCCCGATGCTTCTTC
AGGTTCCTGGCAGAATGGGTTCTCTGGTCTTACTATGGCCAGAACTTCCC
ACGGTGCACGCCAGCAGGGAGGAAAGATGTACCGTATTGAAGCTACCAGC
TTCTCACAAGGAGGTGCCACTAATGGATCTGCTGGAGTGACACTACGCTC
TCGCACCGGCAGATTTTACAAGAGGAAGAACGCGAGCTCTGGAAGCAAGT
TGTCCGACTATCGCCGCGCCAACGCTGTTTATCTTGTTCCCTTTTCTGAG
CTTTCTGCCACCTATGTCAAGATTCACAAGAACGGCGGTGTGATTGCCAG
TATTACTCCGGTTTCCGGATAG