Gchil8251.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8251.t1
Unique NameGchil8251.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length728
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:877706..879889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707443.1
Preferred nameTAF5
PFAMsLisH,TFIID_NTD2,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K03130
KEGG Pathwayko03022,ko05168,map03022,map05168
GOsGO:0000123,GO:0000124,GO:0000428,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032182,GO:0032774,GO:0032947,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0046695,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1903506,GO:1905368,GO:1990234,GO:2000112,GO:2001141
Evalue5.23e-48
EggNOG OGsCOG2319@1|root,KOG0263@2759|Eukaryota
Descriptiontranscription initiation from RNA polymerase II promoter
COG categoryQ
BRITEko00000,ko00001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8251Gchil8251Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 877706..879889 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8251.t1.stop1Gchil8251.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 877706..877708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8251.t1.CDS1Gchil8251.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 877706..879889 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8251.t1.exon1Gchil8251.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 877706..879889 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8251.t1.start1Gchil8251.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 879887..879889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8251.t1Gchil8251.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 877706..879889 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=728bp
MRVNAAEKVSSDYLRKHGYVSETSVAGLGTAQRVSPQQASPPDLGIEHAE
VDDEHRNTLMMLQRPELVAAQDTRRFEDSYCELRDWVDGSLDIYKAEFHA
LLYPLLVHCFLQMIKLKATAEARAFLSRCSAEFREGTAAQRRELTSLSGI
ATPQHLEENEVSNLFLKNRYEVHLSQYAFELLMAFLGDDPRRVVLVRILN
MHLAVRMDEGIEASRTGGFIVKAKEDRAVESGFVPSKDRDALLRTDVLWG
RLRPEHYVIPDEDDAAVKNQKSKPKPTGEKAKQSNETKTKADNPKKDIAE
EEEEPAVREDGTLTKSRIPLKKYRVGSKGIEAPLDRKNRAKLFDAVTMQS
SCDELAILCYTFTNTLEDGLNCSASSEDGSLVVAGFGDSSLRIWDAKSSS
TESGRGGLTGDGTDRLIGHSGPVYAVDWTKCGRFVLSGSEDGSLRLWSAD
YQRDVCSYRGHNYPVWSAAFSPLDHYFVSGGHDRTARVWSTDCLIPLRVF
AGHLADVDCVRWHPNCNYVATGSSDRTARLWDVRDGKCVRVFGTHRGTIH
SLAFSPDGRTLACGGDADTIDIWDVASGKRMRRLSGHSSTVWSLDYSRKG
AILASGGADCKVCVWRATDWSSIIHSTEEDMWQNGDVANEQESNGVDADG
DVRMEGEANGKGDDEESRDKDVDDAEEDRKEAVKKRAEQQRARGSSLLES
FETKDTPIHSVKFTRKNVLVAIGSFRG*
back to top

spliced messenger RNA

>Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00004384_pilon:877706..879889- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTTAATGCAGCTGAGAAGGTTTCTTCTGACTACCTCCGCAAACA
TGGATATGTATCTGAGACTTCTGTGGCAGGCCTTGGAACAGCGCAACGTG
TCTCTCCTCAACAAGCTTCTCCACCCGACCTTGGAATTGAACACGCTGAA
GTTGATGACGAACATCGTAACACCCTCATGATGCTCCAACGCCCTGAGCT
TGTGGCCGCTCAAGATACCAGGCGCTTTGAAGATAGCTACTGCGAGCTTC
GCGATTGGGTGGACGGAAGTTTGGATATCTACAAGGCAGAGTTTCACGCG
TTGCTCTATCCGCTGCTTGTGCACTGCTTTCTTCAGATGATAAAGCTAAA
AGCTACGGCAGAAGCTAGAGCATTTCTGTCTCGTTGCTCAGCAGAGTTTC
GAGAGGGCACTGCCGCCCAGCGTCGGGAACTTACATCGTTATCTGGAATT
GCGACACCACAACATCTGGAGGAGAACGAAGTCTCAAACCTCTTTCTAAA
AAATCGCTATGAAGTGCATTTGTCACAGTATGCTTTCGAACTTTTGATGG
CGTTTCTCGGCGATGACCCAAGGCGGGTAGTTCTGGTACGCATACTCAAT
ATGCACCTTGCTGTGCGAATGGACGAAGGGATCGAGGCATCACGAACAGG
GGGGTTTATTGTAAAGGCAAAAGAAGACCGAGCTGTCGAGTCAGGCTTCG
TACCTTCCAAAGATCGAGATGCTTTATTGCGAACTGATGTGTTGTGGGGT
CGATTGCGCCCAGAGCACTATGTTATACCGGACGAAGATGATGCCGCCGT
GAAGAACCAAAAAAGCAAACCGAAGCCGACTGGAGAAAAAGCCAAGCAGT
CGAACGAGACAAAAACAAAGGCGGATAATCCCAAGAAGGATATTGCTGAG
GAAGAGGAAGAACCCGCTGTTCGTGAGGATGGAACACTGACGAAGTCAAG
AATCCCGCTAAAGAAATATAGAGTGGGTTCAAAAGGCATCGAAGCGCCTC
TTGATCGAAAGAACCGTGCAAAGCTTTTCGATGCAGTTACAATGCAAAGC
AGTTGCGATGAACTTGCTATTCTGTGTTACACCTTTACCAATACGCTTGA
GGATGGTCTTAATTGTTCAGCCTCGTCCGAGGATGGGTCTTTAGTGGTTG
CTGGATTCGGCGACTCTTCGCTGCGCATATGGGATGCCAAGAGCTCAAGT
ACGGAGAGTGGACGAGGTGGATTAACGGGGGATGGGACAGATCGACTAAT
TGGACACTCAGGACCTGTGTACGCAGTTGACTGGACAAAATGCGGCCGTT
TTGTTTTAAGTGGGTCTGAAGATGGAAGTTTGCGTTTATGGTCCGCAGAC
TATCAAAGGGATGTCTGCTCGTACAGGGGTCACAATTATCCTGTATGGAG
TGCAGCCTTTTCTCCTCTAGACCATTATTTTGTGAGTGGTGGGCACGATC
GCACAGCGCGGGTGTGGAGCACTGACTGCCTGATACCGCTCCGAGTTTTT
GCTGGTCACCTCGCTGATGTGGATTGTGTGCGATGGCATCCCAATTGCAA
CTACGTGGCGACAGGATCAAGTGACCGCACGGCGCGCTTGTGGGATGTGC
GAGATGGGAAATGTGTGCGCGTTTTCGGGACACACCGCGGTACTATTCAT
TCCTTGGCGTTTTCTCCTGACGGGCGCACATTGGCGTGTGGTGGGGATGC
TGACACCATAGACATCTGGGATGTTGCGAGTGGGAAACGCATGCGGCGTT
TGAGTGGGCACTCGTCTACAGTGTGGTCCCTTGACTATTCGCGAAAGGGA
GCGATTCTTGCATCAGGAGGGGCAGATTGCAAGGTATGCGTATGGCGAGC
GACAGACTGGTCAAGTATCATTCATTCTACAGAGGAGGACATGTGGCAGA
ATGGAGATGTGGCGAACGAGCAGGAGAGCAACGGCGTGGATGCGGACGGC
GACGTGCGAATGGAGGGGGAGGCAAATGGGAAAGGAGATGATGAAGAAAG
CAGAGACAAGGATGTAGACGACGCGGAAGAGGATAGGAAGGAGGCGGTGA
AGAAACGCGCGGAGCAGCAGAGAGCGCGCGGATCGTCTCTGCTGGAGTCA
TTCGAAACGAAGGACACGCCTATTCACTCGGTGAAGTTTACGCGAAAGAA
TGTGCTGGTGGCAATTGGCAGCTTCCGGGGCTAG
back to top

protein sequence of Gchil8251.t1

>Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=728bp
MRVNAAEKVSSDYLRKHGYVSETSVAGLGTAQRVSPQQASPPDLGIEHAE
VDDEHRNTLMMLQRPELVAAQDTRRFEDSYCELRDWVDGSLDIYKAEFHA
LLYPLLVHCFLQMIKLKATAEARAFLSRCSAEFREGTAAQRRELTSLSGI
ATPQHLEENEVSNLFLKNRYEVHLSQYAFELLMAFLGDDPRRVVLVRILN
MHLAVRMDEGIEASRTGGFIVKAKEDRAVESGFVPSKDRDALLRTDVLWG
RLRPEHYVIPDEDDAAVKNQKSKPKPTGEKAKQSNETKTKADNPKKDIAE
EEEEPAVREDGTLTKSRIPLKKYRVGSKGIEAPLDRKNRAKLFDAVTMQS
SCDELAILCYTFTNTLEDGLNCSASSEDGSLVVAGFGDSSLRIWDAKSSS
TESGRGGLTGDGTDRLIGHSGPVYAVDWTKCGRFVLSGSEDGSLRLWSAD
YQRDVCSYRGHNYPVWSAAFSPLDHYFVSGGHDRTARVWSTDCLIPLRVF
AGHLADVDCVRWHPNCNYVATGSSDRTARLWDVRDGKCVRVFGTHRGTIH
SLAFSPDGRTLACGGDADTIDIWDVASGKRMRRLSGHSSTVWSLDYSRKG
AILASGGADCKVCVWRATDWSSIIHSTEEDMWQNGDVANEQESNGVDADG
DVRMEGEANGKGDDEESRDKDVDDAEEDRKEAVKKRAEQQRARGSSLLES
FETKDTPIHSVKFTRKNVLVAIGSFRG*
back to top

mRNA from alignment at tig00004384_pilon:877706..879889-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00004384_pilon:877706..879889- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGTTAATGCAGCTGAGAAGGTTTCTTCTGACTACCTCCGCAAACA TGGATATGTATCTGAGACTTCTGTGGCAGGCCTTGGAACAGCGCAACGTG TCTCTCCTCAACAAGCTTCTCCACCCGACCTTGGAATTGAACACGCTGAA GTTGATGACGAACATCGTAACACCCTCATGATGCTCCAACGCCCTGAGCT TGTGGCCGCTCAAGATACCAGGCGCTTTGAAGATAGCTACTGCGAGCTTC GCGATTGGGTGGACGGAAGTTTGGATATCTACAAGGCAGAGTTTCACGCG TTGCTCTATCCGCTGCTTGTGCACTGCTTTCTTCAGATGATAAAGCTAAA AGCTACGGCAGAAGCTAGAGCATTTCTGTCTCGTTGCTCAGCAGAGTTTC GAGAGGGCACTGCCGCCCAGCGTCGGGAACTTACATCGTTATCTGGAATT GCGACACCACAACATCTGGAGGAGAACGAAGTCTCAAACCTCTTTCTAAA AAATCGCTATGAAGTGCATTTGTCACAGTATGCTTTCGAACTTTTGATGG CGTTTCTCGGCGATGACCCAAGGCGGGTAGTTCTGGTACGCATACTCAAT ATGCACCTTGCTGTGCGAATGGACGAAGGGATCGAGGCATCACGAACAGG GGGGTTTATTGTAAAGGCAAAAGAAGACCGAGCTGTCGAGTCAGGCTTCG TACCTTCCAAAGATCGAGATGCTTTATTGCGAACTGATGTGTTGTGGGGT CGATTGCGCCCAGAGCACTATGTTATACCGGACGAAGATGATGCCGCCGT GAAGAACCAAAAAAGCAAACCGAAGCCGACTGGAGAAAAAGCCAAGCAGT CGAACGAGACAAAAACAAAGGCGGATAATCCCAAGAAGGATATTGCTGAG GAAGAGGAAGAACCCGCTGTTCGTGAGGATGGAACACTGACGAAGTCAAG AATCCCGCTAAAGAAATATAGAGTGGGTTCAAAAGGCATCGAAGCGCCTC TTGATCGAAAGAACCGTGCAAAGCTTTTCGATGCAGTTACAATGCAAAGC AGTTGCGATGAACTTGCTATTCTGTGTTACACCTTTACCAATACGCTTGA GGATGGTCTTAATTGTTCAGCCTCGTCCGAGGATGGGTCTTTAGTGGTTG CTGGATTCGGCGACTCTTCGCTGCGCATATGGGATGCCAAGAGCTCAAGT ACGGAGAGTGGACGAGGTGGATTAACGGGGGATGGGACAGATCGACTAAT TGGACACTCAGGACCTGTGTACGCAGTTGACTGGACAAAATGCGGCCGTT TTGTTTTAAGTGGGTCTGAAGATGGAAGTTTGCGTTTATGGTCCGCAGAC TATCAAAGGGATGTCTGCTCGTACAGGGGTCACAATTATCCTGTATGGAG TGCAGCCTTTTCTCCTCTAGACCATTATTTTGTGAGTGGTGGGCACGATC GCACAGCGCGGGTGTGGAGCACTGACTGCCTGATACCGCTCCGAGTTTTT GCTGGTCACCTCGCTGATGTGGATTGTGTGCGATGGCATCCCAATTGCAA CTACGTGGCGACAGGATCAAGTGACCGCACGGCGCGCTTGTGGGATGTGC GAGATGGGAAATGTGTGCGCGTTTTCGGGACACACCGCGGTACTATTCAT TCCTTGGCGTTTTCTCCTGACGGGCGCACATTGGCGTGTGGTGGGGATGC TGACACCATAGACATCTGGGATGTTGCGAGTGGGAAACGCATGCGGCGTT TGAGTGGGCACTCGTCTACAGTGTGGTCCCTTGACTATTCGCGAAAGGGA GCGATTCTTGCATCAGGAGGGGCAGATTGCAAGGTATGCGTATGGCGAGC GACAGACTGGTCAAGTATCATTCATTCTACAGAGGAGGACATGTGGCAGA ATGGAGATGTGGCGAACGAGCAGGAGAGCAACGGCGTGGATGCGGACGGC GACGTGCGAATGGAGGGGGAGGCAAATGGGAAAGGAGATGATGAAGAAAG CAGAGACAAGGATGTAGACGACGCGGAAGAGGATAGGAAGGAGGCGGTGA AGAAACGCGCGGAGCAGCAGAGAGCGCGCGGATCGTCTCTGCTGGAGTCA TTCGAAACGAAGGACACGCCTATTCACTCGGTGAAGTTTACGCGAAAGAA TGTGCTGGTGGCAATTGGCAGCTTCCGGGGCTAG
back to top

Coding sequence (CDS) from alignment at tig00004384_pilon:877706..879889-

>Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2184bp|location=Sequence derived from alignment at tig00004384_pilon:877706..879889- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTGTTAATGCAGCTGAGAAGGTTTCTTCTGACTACCTCCGCAAACA
TGGATATGTATCTGAGACTTCTGTGGCAGGCCTTGGAACAGCGCAACGTG
TCTCTCCTCAACAAGCTTCTCCACCCGACCTTGGAATTGAACACGCTGAA
GTTGATGACGAACATCGTAACACCCTCATGATGCTCCAACGCCCTGAGCT
TGTGGCCGCTCAAGATACCAGGCGCTTTGAAGATAGCTACTGCGAGCTTC
GCGATTGGGTGGACGGAAGTTTGGATATCTACAAGGCAGAGTTTCACGCG
TTGCTCTATCCGCTGCTTGTGCACTGCTTTCTTCAGATGATAAAGCTAAA
AGCTACGGCAGAAGCTAGAGCATTTCTGTCTCGTTGCTCAGCAGAGTTTC
GAGAGGGCACTGCCGCCCAGCGTCGGGAACTTACATCGTTATCTGGAATT
GCGACACCACAACATCTGGAGGAGAACGAAGTCTCAAACCTCTTTCTAAA
AAATCGCTATGAAGTGCATTTGTCACAGTATGCTTTCGAACTTTTGATGG
CGTTTCTCGGCGATGACCCAAGGCGGGTAGTTCTGGTACGCATACTCAAT
ATGCACCTTGCTGTGCGAATGGACGAAGGGATCGAGGCATCACGAACAGG
GGGGTTTATTGTAAAGGCAAAAGAAGACCGAGCTGTCGAGTCAGGCTTCG
TACCTTCCAAAGATCGAGATGCTTTATTGCGAACTGATGTGTTGTGGGGT
CGATTGCGCCCAGAGCACTATGTTATACCGGACGAAGATGATGCCGCCGT
GAAGAACCAAAAAAGCAAACCGAAGCCGACTGGAGAAAAAGCCAAGCAGT
CGAACGAGACAAAAACAAAGGCGGATAATCCCAAGAAGGATATTGCTGAG
GAAGAGGAAGAACCCGCTGTTCGTGAGGATGGAACACTGACGAAGTCAAG
AATCCCGCTAAAGAAATATAGAGTGGGTTCAAAAGGCATCGAAGCGCCTC
TTGATCGAAAGAACCGTGCAAAGCTTTTCGATGCAGTTACAATGCAAAGC
AGTTGCGATGAACTTGCTATTCTGTGTTACACCTTTACCAATACGCTTGA
GGATGGTCTTAATTGTTCAGCCTCGTCCGAGGATGGGTCTTTAGTGGTTG
CTGGATTCGGCGACTCTTCGCTGCGCATATGGGATGCCAAGAGCTCAAGT
ACGGAGAGTGGACGAGGTGGATTAACGGGGGATGGGACAGATCGACTAAT
TGGACACTCAGGACCTGTGTACGCAGTTGACTGGACAAAATGCGGCCGTT
TTGTTTTAAGTGGGTCTGAAGATGGAAGTTTGCGTTTATGGTCCGCAGAC
TATCAAAGGGATGTCTGCTCGTACAGGGGTCACAATTATCCTGTATGGAG
TGCAGCCTTTTCTCCTCTAGACCATTATTTTGTGAGTGGTGGGCACGATC
GCACAGCGCGGGTGTGGAGCACTGACTGCCTGATACCGCTCCGAGTTTTT
GCTGGTCACCTCGCTGATGTGGATTGTGTGCGATGGCATCCCAATTGCAA
CTACGTGGCGACAGGATCAAGTGACCGCACGGCGCGCTTGTGGGATGTGC
GAGATGGGAAATGTGTGCGCGTTTTCGGGACACACCGCGGTACTATTCAT
TCCTTGGCGTTTTCTCCTGACGGGCGCACATTGGCGTGTGGTGGGGATGC
TGACACCATAGACATCTGGGATGTTGCGAGTGGGAAACGCATGCGGCGTT
TGAGTGGGCACTCGTCTACAGTGTGGTCCCTTGACTATTCGCGAAAGGGA
GCGATTCTTGCATCAGGAGGGGCAGATTGCAAGGTATGCGTATGGCGAGC
GACAGACTGGTCAAGTATCATTCATTCTACAGAGGAGGACATGTGGCAGA
ATGGAGATGTGGCGAACGAGCAGGAGAGCAACGGCGTGGATGCGGACGGC
GACGTGCGAATGGAGGGGGAGGCAAATGGGAAAGGAGATGATGAAGAAAG
CAGAGACAAGGATGTAGACGACGCGGAAGAGGATAGGAAGGAGGCGGTGA
AGAAACGCGCGGAGCAGCAGAGAGCGCGCGGATCGTCTCTGCTGGAGTCA
TTCGAAACGAAGGACACGCCTATTCACTCGGTGAAGTTTACGCGAAAGAA
TGTGCTGGTGGCAATTGGCAGCTTCCGGGGCTAG
back to top