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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005707443.1 |
| Preferred name | TAF5 |
| PFAMs | LisH,TFIID_NTD2,WD40 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K03130 |
| KEGG Pathway | ko03022,ko05168,map03022,map05168 |
| GOs | GO:0000123,GO:0000124,GO:0000428,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032182,GO:0032774,GO:0032947,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043130,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0046695,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1903506,GO:1905368,GO:1990234,GO:2000112,GO:2001141 |
| Evalue | 5.23e-48 |
| EggNOG OGs | COG2319@1|root,KOG0263@2759|Eukaryota |
| Description | transcription initiation from RNA polymerase II promoter |
| COG category | Q |
| BRITE | ko00000,ko00001,ko03021,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=728bp MRVNAAEKVSSDYLRKHGYVSETSVAGLGTAQRVSPQQASPPDLGIEHAE VDDEHRNTLMMLQRPELVAAQDTRRFEDSYCELRDWVDGSLDIYKAEFHA LLYPLLVHCFLQMIKLKATAEARAFLSRCSAEFREGTAAQRRELTSLSGI ATPQHLEENEVSNLFLKNRYEVHLSQYAFELLMAFLGDDPRRVVLVRILN MHLAVRMDEGIEASRTGGFIVKAKEDRAVESGFVPSKDRDALLRTDVLWG RLRPEHYVIPDEDDAAVKNQKSKPKPTGEKAKQSNETKTKADNPKKDIAE EEEEPAVREDGTLTKSRIPLKKYRVGSKGIEAPLDRKNRAKLFDAVTMQS SCDELAILCYTFTNTLEDGLNCSASSEDGSLVVAGFGDSSLRIWDAKSSS TESGRGGLTGDGTDRLIGHSGPVYAVDWTKCGRFVLSGSEDGSLRLWSAD YQRDVCSYRGHNYPVWSAAFSPLDHYFVSGGHDRTARVWSTDCLIPLRVF AGHLADVDCVRWHPNCNYVATGSSDRTARLWDVRDGKCVRVFGTHRGTIH SLAFSPDGRTLACGGDADTIDIWDVASGKRMRRLSGHSSTVWSLDYSRKG AILASGGADCKVCVWRATDWSSIIHSTEEDMWQNGDVANEQESNGVDADG DVRMEGEANGKGDDEESRDKDVDDAEEDRKEAVKKRAEQQRARGSSLLES FETKDTPIHSVKFTRKNVLVAIGSFRG* back to topspliced messenger RNA >Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00004384_pilon:877706..879889- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGTGTTAATGCAGCTGAGAAGGTTTCTTCTGACTACCTCCGCAAACA TGGATATGTATCTGAGACTTCTGTGGCAGGCCTTGGAACAGCGCAACGTG TCTCTCCTCAACAAGCTTCTCCACCCGACCTTGGAATTGAACACGCTGAA GTTGATGACGAACATCGTAACACCCTCATGATGCTCCAACGCCCTGAGCT TGTGGCCGCTCAAGATACCAGGCGCTTTGAAGATAGCTACTGCGAGCTTC GCGATTGGGTGGACGGAAGTTTGGATATCTACAAGGCAGAGTTTCACGCG TTGCTCTATCCGCTGCTTGTGCACTGCTTTCTTCAGATGATAAAGCTAAA AGCTACGGCAGAAGCTAGAGCATTTCTGTCTCGTTGCTCAGCAGAGTTTC GAGAGGGCACTGCCGCCCAGCGTCGGGAACTTACATCGTTATCTGGAATT GCGACACCACAACATCTGGAGGAGAACGAAGTCTCAAACCTCTTTCTAAA AAATCGCTATGAAGTGCATTTGTCACAGTATGCTTTCGAACTTTTGATGG CGTTTCTCGGCGATGACCCAAGGCGGGTAGTTCTGGTACGCATACTCAAT ATGCACCTTGCTGTGCGAATGGACGAAGGGATCGAGGCATCACGAACAGG GGGGTTTATTGTAAAGGCAAAAGAAGACCGAGCTGTCGAGTCAGGCTTCG TACCTTCCAAAGATCGAGATGCTTTATTGCGAACTGATGTGTTGTGGGGT CGATTGCGCCCAGAGCACTATGTTATACCGGACGAAGATGATGCCGCCGT GAAGAACCAAAAAAGCAAACCGAAGCCGACTGGAGAAAAAGCCAAGCAGT CGAACGAGACAAAAACAAAGGCGGATAATCCCAAGAAGGATATTGCTGAG GAAGAGGAAGAACCCGCTGTTCGTGAGGATGGAACACTGACGAAGTCAAG AATCCCGCTAAAGAAATATAGAGTGGGTTCAAAAGGCATCGAAGCGCCTC TTGATCGAAAGAACCGTGCAAAGCTTTTCGATGCAGTTACAATGCAAAGC AGTTGCGATGAACTTGCTATTCTGTGTTACACCTTTACCAATACGCTTGA GGATGGTCTTAATTGTTCAGCCTCGTCCGAGGATGGGTCTTTAGTGGTTG CTGGATTCGGCGACTCTTCGCTGCGCATATGGGATGCCAAGAGCTCAAGT ACGGAGAGTGGACGAGGTGGATTAACGGGGGATGGGACAGATCGACTAAT TGGACACTCAGGACCTGTGTACGCAGTTGACTGGACAAAATGCGGCCGTT TTGTTTTAAGTGGGTCTGAAGATGGAAGTTTGCGTTTATGGTCCGCAGAC TATCAAAGGGATGTCTGCTCGTACAGGGGTCACAATTATCCTGTATGGAG TGCAGCCTTTTCTCCTCTAGACCATTATTTTGTGAGTGGTGGGCACGATC GCACAGCGCGGGTGTGGAGCACTGACTGCCTGATACCGCTCCGAGTTTTT GCTGGTCACCTCGCTGATGTGGATTGTGTGCGATGGCATCCCAATTGCAA CTACGTGGCGACAGGATCAAGTGACCGCACGGCGCGCTTGTGGGATGTGC GAGATGGGAAATGTGTGCGCGTTTTCGGGACACACCGCGGTACTATTCAT TCCTTGGCGTTTTCTCCTGACGGGCGCACATTGGCGTGTGGTGGGGATGC TGACACCATAGACATCTGGGATGTTGCGAGTGGGAAACGCATGCGGCGTT TGAGTGGGCACTCGTCTACAGTGTGGTCCCTTGACTATTCGCGAAAGGGA GCGATTCTTGCATCAGGAGGGGCAGATTGCAAGGTATGCGTATGGCGAGC GACAGACTGGTCAAGTATCATTCATTCTACAGAGGAGGACATGTGGCAGA ATGGAGATGTGGCGAACGAGCAGGAGAGCAACGGCGTGGATGCGGACGGC GACGTGCGAATGGAGGGGGAGGCAAATGGGAAAGGAGATGATGAAGAAAG CAGAGACAAGGATGTAGACGACGCGGAAGAGGATAGGAAGGAGGCGGTGA AGAAACGCGCGGAGCAGCAGAGAGCGCGCGGATCGTCTCTGCTGGAGTCA TTCGAAACGAAGGACACGCCTATTCACTCGGTGAAGTTTACGCGAAAGAA TGTGCTGGTGGCAATTGGCAGCTTCCGGGGCTAG back to topprotein sequence of Gchil8251.t1 >Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=728bp
MRVNAAEKVSSDYLRKHGYVSETSVAGLGTAQRVSPQQASPPDLGIEHAE VDDEHRNTLMMLQRPELVAAQDTRRFEDSYCELRDWVDGSLDIYKAEFHA LLYPLLVHCFLQMIKLKATAEARAFLSRCSAEFREGTAAQRRELTSLSGI ATPQHLEENEVSNLFLKNRYEVHLSQYAFELLMAFLGDDPRRVVLVRILN MHLAVRMDEGIEASRTGGFIVKAKEDRAVESGFVPSKDRDALLRTDVLWG RLRPEHYVIPDEDDAAVKNQKSKPKPTGEKAKQSNETKTKADNPKKDIAE EEEEPAVREDGTLTKSRIPLKKYRVGSKGIEAPLDRKNRAKLFDAVTMQS SCDELAILCYTFTNTLEDGLNCSASSEDGSLVVAGFGDSSLRIWDAKSSS TESGRGGLTGDGTDRLIGHSGPVYAVDWTKCGRFVLSGSEDGSLRLWSAD YQRDVCSYRGHNYPVWSAAFSPLDHYFVSGGHDRTARVWSTDCLIPLRVF AGHLADVDCVRWHPNCNYVATGSSDRTARLWDVRDGKCVRVFGTHRGTIH SLAFSPDGRTLACGGDADTIDIWDVASGKRMRRLSGHSSTVWSLDYSRKG AILASGGADCKVCVWRATDWSSIIHSTEEDMWQNGDVANEQESNGVDADG DVRMEGEANGKGDDEESRDKDVDDAEEDRKEAVKKRAEQQRARGSSLLES FETKDTPIHSVKFTRKNVLVAIGSFRG* back to topmRNA from alignment at tig00004384_pilon:877706..879889- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00004384_pilon:877706..879889- (Gracilaria chilensis NLEC103_M9 male) ATGCGTGTTAATGCAGCTGAGAAGGTTTCTTCTGACTACCTCCGCAAACA
TGGATATGTATCTGAGACTTCTGTGGCAGGCCTTGGAACAGCGCAACGTG
TCTCTCCTCAACAAGCTTCTCCACCCGACCTTGGAATTGAACACGCTGAA
GTTGATGACGAACATCGTAACACCCTCATGATGCTCCAACGCCCTGAGCT
TGTGGCCGCTCAAGATACCAGGCGCTTTGAAGATAGCTACTGCGAGCTTC
GCGATTGGGTGGACGGAAGTTTGGATATCTACAAGGCAGAGTTTCACGCG
TTGCTCTATCCGCTGCTTGTGCACTGCTTTCTTCAGATGATAAAGCTAAA
AGCTACGGCAGAAGCTAGAGCATTTCTGTCTCGTTGCTCAGCAGAGTTTC
GAGAGGGCACTGCCGCCCAGCGTCGGGAACTTACATCGTTATCTGGAATT
GCGACACCACAACATCTGGAGGAGAACGAAGTCTCAAACCTCTTTCTAAA
AAATCGCTATGAAGTGCATTTGTCACAGTATGCTTTCGAACTTTTGATGG
CGTTTCTCGGCGATGACCCAAGGCGGGTAGTTCTGGTACGCATACTCAAT
ATGCACCTTGCTGTGCGAATGGACGAAGGGATCGAGGCATCACGAACAGG
GGGGTTTATTGTAAAGGCAAAAGAAGACCGAGCTGTCGAGTCAGGCTTCG
TACCTTCCAAAGATCGAGATGCTTTATTGCGAACTGATGTGTTGTGGGGT
CGATTGCGCCCAGAGCACTATGTTATACCGGACGAAGATGATGCCGCCGT
GAAGAACCAAAAAAGCAAACCGAAGCCGACTGGAGAAAAAGCCAAGCAGT
CGAACGAGACAAAAACAAAGGCGGATAATCCCAAGAAGGATATTGCTGAG
GAAGAGGAAGAACCCGCTGTTCGTGAGGATGGAACACTGACGAAGTCAAG
AATCCCGCTAAAGAAATATAGAGTGGGTTCAAAAGGCATCGAAGCGCCTC
TTGATCGAAAGAACCGTGCAAAGCTTTTCGATGCAGTTACAATGCAAAGC
AGTTGCGATGAACTTGCTATTCTGTGTTACACCTTTACCAATACGCTTGA
GGATGGTCTTAATTGTTCAGCCTCGTCCGAGGATGGGTCTTTAGTGGTTG
CTGGATTCGGCGACTCTTCGCTGCGCATATGGGATGCCAAGAGCTCAAGT
ACGGAGAGTGGACGAGGTGGATTAACGGGGGATGGGACAGATCGACTAAT
TGGACACTCAGGACCTGTGTACGCAGTTGACTGGACAAAATGCGGCCGTT
TTGTTTTAAGTGGGTCTGAAGATGGAAGTTTGCGTTTATGGTCCGCAGAC
TATCAAAGGGATGTCTGCTCGTACAGGGGTCACAATTATCCTGTATGGAG
TGCAGCCTTTTCTCCTCTAGACCATTATTTTGTGAGTGGTGGGCACGATC
GCACAGCGCGGGTGTGGAGCACTGACTGCCTGATACCGCTCCGAGTTTTT
GCTGGTCACCTCGCTGATGTGGATTGTGTGCGATGGCATCCCAATTGCAA
CTACGTGGCGACAGGATCAAGTGACCGCACGGCGCGCTTGTGGGATGTGC
GAGATGGGAAATGTGTGCGCGTTTTCGGGACACACCGCGGTACTATTCAT
TCCTTGGCGTTTTCTCCTGACGGGCGCACATTGGCGTGTGGTGGGGATGC
TGACACCATAGACATCTGGGATGTTGCGAGTGGGAAACGCATGCGGCGTT
TGAGTGGGCACTCGTCTACAGTGTGGTCCCTTGACTATTCGCGAAAGGGA
GCGATTCTTGCATCAGGAGGGGCAGATTGCAAGGTATGCGTATGGCGAGC
GACAGACTGGTCAAGTATCATTCATTCTACAGAGGAGGACATGTGGCAGA
ATGGAGATGTGGCGAACGAGCAGGAGAGCAACGGCGTGGATGCGGACGGC
GACGTGCGAATGGAGGGGGAGGCAAATGGGAAAGGAGATGATGAAGAAAG
CAGAGACAAGGATGTAGACGACGCGGAAGAGGATAGGAAGGAGGCGGTGA
AGAAACGCGCGGAGCAGCAGAGAGCGCGCGGATCGTCTCTGCTGGAGTCA
TTCGAAACGAAGGACACGCCTATTCACTCGGTGAAGTTTACGCGAAAGAA
TGTGCTGGTGGCAATTGGCAGCTTCCGGGGCTAG back to topCoding sequence (CDS) from alignment at tig00004384_pilon:877706..879889- >Gchil8251.t1 ID=Gchil8251.t1|Name=Gchil8251.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2184bp|location=Sequence derived from alignment at tig00004384_pilon:877706..879889- (Gracilaria chilensis NLEC103_M9 male) ATGCGTGTTAATGCAGCTGAGAAGGTTTCTTCTGACTACCTCCGCAAACA TGGATATGTATCTGAGACTTCTGTGGCAGGCCTTGGAACAGCGCAACGTG TCTCTCCTCAACAAGCTTCTCCACCCGACCTTGGAATTGAACACGCTGAA GTTGATGACGAACATCGTAACACCCTCATGATGCTCCAACGCCCTGAGCT TGTGGCCGCTCAAGATACCAGGCGCTTTGAAGATAGCTACTGCGAGCTTC GCGATTGGGTGGACGGAAGTTTGGATATCTACAAGGCAGAGTTTCACGCG TTGCTCTATCCGCTGCTTGTGCACTGCTTTCTTCAGATGATAAAGCTAAA AGCTACGGCAGAAGCTAGAGCATTTCTGTCTCGTTGCTCAGCAGAGTTTC GAGAGGGCACTGCCGCCCAGCGTCGGGAACTTACATCGTTATCTGGAATT GCGACACCACAACATCTGGAGGAGAACGAAGTCTCAAACCTCTTTCTAAA AAATCGCTATGAAGTGCATTTGTCACAGTATGCTTTCGAACTTTTGATGG CGTTTCTCGGCGATGACCCAAGGCGGGTAGTTCTGGTACGCATACTCAAT ATGCACCTTGCTGTGCGAATGGACGAAGGGATCGAGGCATCACGAACAGG GGGGTTTATTGTAAAGGCAAAAGAAGACCGAGCTGTCGAGTCAGGCTTCG TACCTTCCAAAGATCGAGATGCTTTATTGCGAACTGATGTGTTGTGGGGT CGATTGCGCCCAGAGCACTATGTTATACCGGACGAAGATGATGCCGCCGT GAAGAACCAAAAAAGCAAACCGAAGCCGACTGGAGAAAAAGCCAAGCAGT CGAACGAGACAAAAACAAAGGCGGATAATCCCAAGAAGGATATTGCTGAG GAAGAGGAAGAACCCGCTGTTCGTGAGGATGGAACACTGACGAAGTCAAG AATCCCGCTAAAGAAATATAGAGTGGGTTCAAAAGGCATCGAAGCGCCTC TTGATCGAAAGAACCGTGCAAAGCTTTTCGATGCAGTTACAATGCAAAGC AGTTGCGATGAACTTGCTATTCTGTGTTACACCTTTACCAATACGCTTGA GGATGGTCTTAATTGTTCAGCCTCGTCCGAGGATGGGTCTTTAGTGGTTG CTGGATTCGGCGACTCTTCGCTGCGCATATGGGATGCCAAGAGCTCAAGT ACGGAGAGTGGACGAGGTGGATTAACGGGGGATGGGACAGATCGACTAAT TGGACACTCAGGACCTGTGTACGCAGTTGACTGGACAAAATGCGGCCGTT TTGTTTTAAGTGGGTCTGAAGATGGAAGTTTGCGTTTATGGTCCGCAGAC TATCAAAGGGATGTCTGCTCGTACAGGGGTCACAATTATCCTGTATGGAG TGCAGCCTTTTCTCCTCTAGACCATTATTTTGTGAGTGGTGGGCACGATC GCACAGCGCGGGTGTGGAGCACTGACTGCCTGATACCGCTCCGAGTTTTT GCTGGTCACCTCGCTGATGTGGATTGTGTGCGATGGCATCCCAATTGCAA CTACGTGGCGACAGGATCAAGTGACCGCACGGCGCGCTTGTGGGATGTGC GAGATGGGAAATGTGTGCGCGTTTTCGGGACACACCGCGGTACTATTCAT TCCTTGGCGTTTTCTCCTGACGGGCGCACATTGGCGTGTGGTGGGGATGC TGACACCATAGACATCTGGGATGTTGCGAGTGGGAAACGCATGCGGCGTT TGAGTGGGCACTCGTCTACAGTGTGGTCCCTTGACTATTCGCGAAAGGGA GCGATTCTTGCATCAGGAGGGGCAGATTGCAAGGTATGCGTATGGCGAGC GACAGACTGGTCAAGTATCATTCATTCTACAGAGGAGGACATGTGGCAGA ATGGAGATGTGGCGAACGAGCAGGAGAGCAACGGCGTGGATGCGGACGGC GACGTGCGAATGGAGGGGGAGGCAAATGGGAAAGGAGATGATGAAGAAAG CAGAGACAAGGATGTAGACGACGCGGAAGAGGATAGGAAGGAGGCGGTGA AGAAACGCGCGGAGCAGCAGAGAGCGCGCGGATCGTCTCTGCTGGAGTCA TTCGAAACGAAGGACACGCCTATTCACTCGGTGAAGTTTACGCGAAAGAA TGTGCTGGTGGCAATTGGCAGCTTCCGGGGCTAG back to top
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