Gchil8249.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8249.t1
Unique NameGchil8249.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length153
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:874010..874468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR441CT
Max annot lvl2759|Eukaryota
Evalue1.27e-38
EggNOG OGs2E3VE@1|root,2SAVA@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8249Gchil8249Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 874010..874468 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8249.t1.start1Gchil8249.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 874010..874012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8249.t1.CDS1Gchil8249.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 874010..874468 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8249.t1.exon1Gchil8249.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 874010..874468 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8249.t1.stop1Gchil8249.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 874466..874468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8249.t1Gchil8249.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 874010..874468 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8249.t1 ID=Gchil8249.t1|Name=Gchil8249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=153bp
MEPMMKQLEEETGMTLRKFEVWYNDDNLRLLQRLDKDGVCNGVPFFYSKV
KRDWICGATIYPNFKAWALGKPHERFLSPPTEDSEVMGQFKGFFDRIKNT
GFQAIRERMEAGKRLAGEDNKNSQSGGKGAFSFYGGVLIPKSATNTCPRT
RR*
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spliced messenger RNA

>Gchil8249.t1 ID=Gchil8249.t1|Name=Gchil8249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=459bp|location=Sequence derived from alignment at tig00004384_pilon:874010..874468+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCAATGATGAAACAACTTGAGGAGGAAACGGGAATGACATTACG
CAAGTTTGAAGTATGGTACAACGATGATAATCTACGTTTACTACAACGAC
TAGACAAGGATGGAGTGTGCAATGGGGTCCCTTTCTTCTATTCCAAAGTG
AAGCGAGATTGGATATGCGGAGCCACAATTTACCCCAACTTCAAAGCATG
GGCGCTTGGCAAGCCGCATGAAAGGTTTTTAAGTCCACCTACGGAAGACA
GCGAGGTCATGGGACAGTTTAAAGGTTTCTTCGATCGCATTAAGAACACA
GGCTTCCAGGCAATCCGCGAGCGTATGGAGGCCGGCAAGAGACTTGCCGG
CGAGGACAACAAAAACAGTCAGTCAGGTGGAAAAGGTGCCTTCTCATTTT
ACGGTGGTGTTCTCATTCCAAAATCCGCGACAAACACATGTCCTCGCACG
AGAAGATAA
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protein sequence of Gchil8249.t1

>Gchil8249.t1 ID=Gchil8249.t1|Name=Gchil8249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=153bp
MEPMMKQLEEETGMTLRKFEVWYNDDNLRLLQRLDKDGVCNGVPFFYSKV
KRDWICGATIYPNFKAWALGKPHERFLSPPTEDSEVMGQFKGFFDRIKNT
GFQAIRERMEAGKRLAGEDNKNSQSGGKGAFSFYGGVLIPKSATNTCPRT
RR*
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mRNA from alignment at tig00004384_pilon:874010..874468+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8249.t1 ID=Gchil8249.t1|Name=Gchil8249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=459bp|location=Sequence derived from alignment at tig00004384_pilon:874010..874468+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCAATGATGAAACAACTTGAGGAGGAAACGGGAATGACATTACG
CAAGTTTGAAGTATGGTACAACGATGATAATCTACGTTTACTACAACGAC
TAGACAAGGATGGAGTGTGCAATGGGGTCCCTTTCTTCTATTCCAAAGTG
AAGCGAGATTGGATATGCGGAGCCACAATTTACCCCAACTTCAAAGCATG
GGCGCTTGGCAAGCCGCATGAAAGGTTTTTAAGTCCACCTACGGAAGACA
GCGAGGTCATGGGACAGTTTAAAGGTTTCTTCGATCGCATTAAGAACACA
GGCTTCCAGGCAATCCGCGAGCGTATGGAGGCCGGCAAGAGACTTGCCGG
CGAGGACAACAAAAACAGTCAGTCAGGTGGAAAAGGTGCCTTCTCATTTT
ACGGTGGTGTTCTCATTCCAAAATCCGCGACAAACACATGTCCTCGCACG
AGAAGATAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:874010..874468+

>Gchil8249.t1 ID=Gchil8249.t1|Name=Gchil8249.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=459bp|location=Sequence derived from alignment at tig00004384_pilon:874010..874468+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCAATGATGAAACAACTTGAGGAGGAAACGGGAATGACATTACG
CAAGTTTGAAGTATGGTACAACGATGATAATCTACGTTTACTACAACGAC
TAGACAAGGATGGAGTGTGCAATGGGGTCCCTTTCTTCTATTCCAAAGTG
AAGCGAGATTGGATATGCGGAGCCACAATTTACCCCAACTTCAAAGCATG
GGCGCTTGGCAAGCCGCATGAAAGGTTTTTAAGTCCACCTACGGAAGACA
GCGAGGTCATGGGACAGTTTAAAGGTTTCTTCGATCGCATTAAGAACACA
GGCTTCCAGGCAATCCGCGAGCGTATGGAGGCCGGCAAGAGACTTGCCGG
CGAGGACAACAAAAACAGTCAGTCAGGTGGAAAAGGTGCCTTCTCATTTT
ACGGTGGTGTTCTCATTCCAAAATCCGCGACAAACACATGTCCTCGCACG
AGAAGATAA
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