Gchil8245.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8245.t1
Unique NameGchil8245.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:861222..861882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1499967.BAYZ01000119_gene3209
PFAMsAhpC-TSA
Max annot lvl2|Bacteria
Evalue1.83e-79
EggNOG OGsCOG1225@1|root,COG1225@2|Bacteria,2NS0C@2323|unclassified Bacteria
DescriptionRedoxin
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8245Gchil8245Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 861222..861882 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8245.t1Gchil8245.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 861222..861882 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8245.t1.stop1Gchil8245.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 861222..861224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8245.t1.CDS1Gchil8245.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 861222..861396 -
Gchil8245.t1.CDS2Gchil8245.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 861473..861882 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8245.t1.exon1Gchil8245.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 861222..861396 -
Gchil8245.t1.exon2Gchil8245.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 861473..861882 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8245.t1.intron1Gchil8245.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 861397..861472 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8245.t1.start1Gchil8245.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 861880..861882 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8245.t1 ID=Gchil8245.t1|Name=Gchil8245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=195bp
MVLTPSTMLPLGTTAQDFTLLEPLTGKKLSLADVKGENGVLIVFICNHCP
FVVHLQDELTALGRDFRAKGVGMVGISSNDIHSYPADGPEEIAKFASKKF
TTFPYLFDESQETAKAYRAACTPDIFLFDKNLNLVYRGQIDDSRPGNGKP
VTGKAIRDAVDLMVEGNPIPEETMMPSIGCSIKWHEGNAPDYFG*
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spliced messenger RNA

>Gchil8245.t1 ID=Gchil8245.t1|Name=Gchil8245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00004384_pilon:861222..861882- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTCACACCGTCCACAATGCTCCCTTTGGGCACCACGGCACAAGA
CTTCACTCTGTTGGAGCCACTAACTGGAAAGAAGTTATCACTTGCTGATG
TTAAAGGGGAGAATGGTGTGCTTATCGTCTTCATTTGTAATCATTGTCCA
TTCGTGGTCCATCTCCAGGACGAATTAACCGCTCTGGGGCGCGACTTTCG
CGCAAAAGGTGTTGGAATGGTTGGCATATCGAGCAACGATATCCATAGCT
ACCCAGCTGATGGACCAGAAGAAATTGCAAAGTTCGCGAGCAAAAAGTTT
ACTACCTTCCCGTATCTCTTTGACGAATCTCAAGAGACAGCGAAGGCGTA
TCGTGCTGCCTGTACTCCTGACATCTTCCTTTTTGACAAGAACCTTAATC
TTGTTTACAGGGGGCAGATTGATGACTCGAGACCAGGCAATGGTAAACCA
GTAACTGGAAAGGCTATCCGAGATGCAGTGGATCTCATGGTGGAGGGAAA
CCCGATACCCGAAGAGACCATGATGCCGTCTATTGGATGTAGCATCAAGT
GGCACGAAGGAAACGCGCCCGACTATTTCGGATAA
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protein sequence of Gchil8245.t1

>Gchil8245.t1 ID=Gchil8245.t1|Name=Gchil8245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=195bp
MVLTPSTMLPLGTTAQDFTLLEPLTGKKLSLADVKGENGVLIVFICNHCP
FVVHLQDELTALGRDFRAKGVGMVGISSNDIHSYPADGPEEIAKFASKKF
TTFPYLFDESQETAKAYRAACTPDIFLFDKNLNLVYRGQIDDSRPGNGKP
VTGKAIRDAVDLMVEGNPIPEETMMPSIGCSIKWHEGNAPDYFG*
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mRNA from alignment at tig00004384_pilon:861222..861882-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8245.t1 ID=Gchil8245.t1|Name=Gchil8245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=661bp|location=Sequence derived from alignment at tig00004384_pilon:861222..861882- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCTCACACCGTCCACAATGCTCCCTTTGGGCACCACGGCACAAGA
CTTCACTCTGTTGGAGCCACTAACTGGAAAGAAGTTATCACTTGCTGATG
TTAAAGGGGAGAATGGTGTGCTTATCGTCTTCATTTGTAATCATTGTCCA
TTCGTGGTCCATCTCCAGGACGAATTAACCGCTCTGGGGCGCGACTTTCG
CGCAAAAGGTGTTGGAATGGTTGGCATATCGAGCAACGATATCCATAGCT
ACCCAGCTGATGGACCAGAAGAAATTGCAAAGTTCGCGAGCAAAAAGTTT
ACTACCTTCCCGTATCTCTTTGACGAATCTCAAGAGACAGCGAAGGCGTA
TCGTGCTGCCTGTACTCCTGACATCTTCCTTTTTGACAAGAACCTTAATC
TTGTTTACAGGTGCGTATGCCCGCTATTTTCATCACATCCTACCTTAAAT
CTCTTTTCGCTGACAAGAATACTTTTACCTGGACAGGGGGCAGATTGATG
ACTCGAGACCAGGCAATGGTAAACCAGTAACTGGAAAGGCTATCCGAGAT
GCAGTGGATCTCATGGTGGAGGGAAACCCGATACCCGAAGAGACCATGAT
GCCGTCTATTGGATGTAGCATCAAGTGGCACGAAGGAAACGCGCCCGACT
ATTTCGGATAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:861222..861882-

>Gchil8245.t1 ID=Gchil8245.t1|Name=Gchil8245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00004384_pilon:861222..861882- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTCTCACACCGTCCACAATGCTCCCTTTGGGCACCACGGCACAAGA
CTTCACTCTGTTGGAGCCACTAACTGGAAAGAAGTTATCACTTGCTGATG
TTAAAGGGGAGAATGGTGTGCTTATCGTCTTCATTTGTAATCATTGTCCA
TTCGTGGTCCATCTCCAGGACGAATTAACCGCTCTGGGGCGCGACTTTCG
CGCAAAAGGTGTTGGAATGGTTGGCATATCGAGCAACGATATCCATAGCT
ACCCAGCTGATGGACCAGAAGAAATTGCAAAGTTCGCGAGCAAAAAGTTT
ACTACCTTCCCGTATCTCTTTGACGAATCTCAAGAGACAGCGAAGGCGTA
TCGTGCTGCCTGTACTCCTGACATCTTCCTTTTTGACAAGAACCTTAATC
TTGTTTACAGGGGGCAGATTGATGACTCGAGACCAGGCAATGGTAAACCA
GTAACTGGAAAGGCTATCCGAGATGCAGTGGATCTCATGGTGGAGGGAAA
CCCGATACCCGAAGAGACCATGATGCCGTCTATTGGATGTAGCATCAAGT
GGCACGAAGGAAACGCGCCCGACTATTTCGGATAA
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