Gchil8233.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8233.t2
Unique NameGchil8233.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length557
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:827842..829878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog179408.Osc7112_4853
PFAMsAmino_oxidase
Max annot lvl1117|Cyanobacteria
Evalue7.5e-203
EggNOG OGsCOG1233@1|root,COG3349@1|root,COG1233@2|Bacteria,COG3349@2|Bacteria,1G04N@1117|Cyanobacteria,1H8ST@1150|Oscillatoriales
DescriptionPFAM Flavin containing amine oxidoreductase
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8233Gchil8233Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 827842..829878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8233.t2Gchil8233.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 827842..829878 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8233.t2.stop1Gchil8233.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 827842..827844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8233.t2.CDS1Gchil8233.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 827842..828067 -
Gchil8233.t2.CDS2Gchil8233.t2.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 828320..828395 -
Gchil8233.t2.CDS3Gchil8233.t2.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 828510..829878 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8233.t2.exon1Gchil8233.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 827842..828067 -
Gchil8233.t2.exon2Gchil8233.t2.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 828320..828395 -
Gchil8233.t2.exon3Gchil8233.t2.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 828510..829878 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8233.t2.intron1Gchil8233.t2.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 828068..828319 -
Gchil8233.t2.intron2Gchil8233.t2.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 828396..828509 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8233.t2.start1Gchil8233.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 829876..829878 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8233.t2 ID=Gchil8233.t2|Name=Gchil8233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=557bp
MKLASNPAFVLGPLLNNNPVQSAPRDFRRQIIKEAARHGPRWKMESKNTS
TNRVAVIGAGWAGLGAAHHLVQQFGTEITLIDAAPSVGGLVAGWKTANGQ
DVEVGIHGMWRPYYNLFHLVKRELKLDPFTDWTKSSQRSPKGKVVESPIF
NDLPRLPTPLGTFVYTKFLDLPLADRLSALPLLEAVIEWDNSDEVWRKFD
KMTAKELFKLYGCTERVYKEAFEPMLLVGLFAPGEQCSAAGALGMLYFFI
LAHQADFDVVWPRGTVGTKIFAPLVDRIRVHGGNIRTSTRLKDVVIDNNK
ITKIVTTKDGSESVLAVDAVVFAVGISGLQGILRNSKTLASRKDFRNTNN
LSSIDVMAVRLYFNRKIRIEFDSNACFGFDETTGWTYFNLNAIHDEFKDA
EKTVIEADFYHSNQLMPMEDTEIVEEVRRRLCVAERTFKGAEVEDYVVVR
VPRGVTHFRPGSYQDFMNVRTSIDNVFMSGGKIRTSHGSFSQEKALVTGY
EAANATLEYFGYEKSAQKTIIPVEEDEPHIIVARRVYKALERIRRQFNPF
SGLFIV*
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spliced messenger RNA

>Gchil8233.t2 ID=Gchil8233.t2|Name=Gchil8233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at tig00004384_pilon:827842..829878- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTGCTTCCAATCCCGCCTTTGTTCTCGGTCCATTACTTAATAA
TAACCCCGTTCAGTCGGCTCCAAGAGATTTTCGTCGCCAGATTATCAAAG
AAGCTGCGCGACATGGGCCGAGATGGAAAATGGAATCCAAGAATACGAGC
ACGAATCGCGTCGCTGTTATTGGAGCTGGTTGGGCTGGTTTAGGAGCTGC
TCACCACCTTGTGCAACAATTTGGAACTGAGATTACTCTCATTGACGCTG
CTCCCTCTGTGGGAGGATTGGTTGCCGGATGGAAGACAGCAAATGGCCAA
GATGTAGAGGTAGGCATTCACGGCATGTGGCGCCCATATTATAACCTCTT
TCATTTGGTTAAACGCGAATTGAAGTTAGATCCCTTCACCGACTGGACGA
AGTCATCCCAGAGATCTCCGAAAGGAAAAGTCGTCGAAAGCCCAATCTTC
AACGACTTACCGAGACTCCCAACACCGTTGGGTACATTTGTATACACCAA
GTTCTTGGATCTGCCTTTGGCTGATAGGCTATCGGCACTTCCTTTGCTTG
AAGCCGTCATTGAATGGGACAACTCCGATGAAGTGTGGCGCAAATTTGAT
AAAATGACAGCGAAAGAATTGTTTAAGCTATACGGTTGTACTGAGCGTGT
CTATAAAGAAGCCTTTGAACCAATGCTGCTAGTGGGTTTATTCGCCCCAG
GAGAACAATGCAGCGCGGCTGGTGCCCTGGGTATGTTGTATTTCTTTATT
CTTGCGCACCAGGCCGACTTTGATGTGGTCTGGCCTCGCGGCACAGTTGG
GACGAAGATTTTTGCCCCCCTCGTGGATCGCATACGGGTTCATGGAGGAA
ATATAAGAACGTCGACTAGACTGAAAGATGTTGTGATTGACAACAACAAA
ATAACCAAGATTGTGACAACTAAAGACGGAAGTGAGAGCGTGCTGGCCGT
TGACGCCGTAGTCTTTGCTGTCGGAATCAGCGGACTGCAAGGCATTTTAC
GCAACAGCAAAACGCTCGCATCTCGAAAGGATTTTCGCAACACGAACAAC
TTGTCAAGTATTGATGTCATGGCAGTACGATTATACTTCAATAGAAAGAT
TCGCATCGAATTTGATTCGAATGCATGTTTTGGTTTCGATGAAACTACAG
GATGGACATATTTCAACCTCAATGCCATCCACGACGAGTTTAAGGATGCG
GAGAAGACCGTCATTGAGGCCGATTTCTATCACAGTAATCAGCTCATGCC
CATGGAGGACACTGAGATCGTTGAAGAAGTACGAAGAAGACTCTGTGTGG
CTGAGAGGACGTTTAAAGGTGCAGAAGTCGAAGACTACGTTGTCGTCCGA
GTTCCTCGCGGTGTAACACACTTTCGGCCTGGATCGTATCAAGACTTCAT
GAACGTAAGAACATCGATTGACAACGTCTTCATGTCCGGAGGTAAGATAC
GTACGTCTCACGGAAGTTTCAGCCAGGAAAAAGCTCTTGTCACTGGTTAC
GAAGCTGCAAACGCGACTCTAGAGTATTTTGGATATGAAAAGTCGGCCCA
AAAAACAATTATTCCAGTTGAGGAGGACGAGCCCCATATCATCGTTGCTA
GGCGCGTCTACAAAGCTTTGGAAAGAATTCGCCGCCAGTTTAATCCATTC
TCAGGCCTATTCATAGTGTAG
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protein sequence of Gchil8233.t2

>Gchil8233.t2 ID=Gchil8233.t2|Name=Gchil8233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=557bp
MKLASNPAFVLGPLLNNNPVQSAPRDFRRQIIKEAARHGPRWKMESKNTS
TNRVAVIGAGWAGLGAAHHLVQQFGTEITLIDAAPSVGGLVAGWKTANGQ
DVEVGIHGMWRPYYNLFHLVKRELKLDPFTDWTKSSQRSPKGKVVESPIF
NDLPRLPTPLGTFVYTKFLDLPLADRLSALPLLEAVIEWDNSDEVWRKFD
KMTAKELFKLYGCTERVYKEAFEPMLLVGLFAPGEQCSAAGALGMLYFFI
LAHQADFDVVWPRGTVGTKIFAPLVDRIRVHGGNIRTSTRLKDVVIDNNK
ITKIVTTKDGSESVLAVDAVVFAVGISGLQGILRNSKTLASRKDFRNTNN
LSSIDVMAVRLYFNRKIRIEFDSNACFGFDETTGWTYFNLNAIHDEFKDA
EKTVIEADFYHSNQLMPMEDTEIVEEVRRRLCVAERTFKGAEVEDYVVVR
VPRGVTHFRPGSYQDFMNVRTSIDNVFMSGGKIRTSHGSFSQEKALVTGY
EAANATLEYFGYEKSAQKTIIPVEEDEPHIIVARRVYKALERIRRQFNPF
SGLFIV*
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mRNA from alignment at tig00004384_pilon:827842..829878-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8233.t2 ID=Gchil8233.t2|Name=Gchil8233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at tig00004384_pilon:827842..829878- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTTGCTTCCAATCCCGCCTTTGTTCTCGGTCCATTACTTAATAA
TAACCCCGTTCAGTCGGCTCCAAGAGATTTTCGTCGCCAGATTATCAAAG
AAGCTGCGCGACATGGGCCGAGATGGAAAATGGAATCCAAGAATACGAGC
ACGAATCGCGTCGCTGTTATTGGAGCTGGTTGGGCTGGTTTAGGAGCTGC
TCACCACCTTGTGCAACAATTTGGAACTGAGATTACTCTCATTGACGCTG
CTCCCTCTGTGGGAGGATTGGTTGCCGGATGGAAGACAGCAAATGGCCAA
GATGTAGAGGTAGGCATTCACGGCATGTGGCGCCCATATTATAACCTCTT
TCATTTGGTTAAACGCGAATTGAAGTTAGATCCCTTCACCGACTGGACGA
AGTCATCCCAGAGATCTCCGAAAGGAAAAGTCGTCGAAAGCCCAATCTTC
AACGACTTACCGAGACTCCCAACACCGTTGGGTACATTTGTATACACCAA
GTTCTTGGATCTGCCTTTGGCTGATAGGCTATCGGCACTTCCTTTGCTTG
AAGCCGTCATTGAATGGGACAACTCCGATGAAGTGTGGCGCAAATTTGAT
AAAATGACAGCGAAAGAATTGTTTAAGCTATACGGTTGTACTGAGCGTGT
CTATAAAGAAGCCTTTGAACCAATGCTGCTAGTGGGTTTATTCGCCCCAG
GAGAACAATGCAGCGCGGCTGGTGCCCTGGGTATGTTGTATTTCTTTATT
CTTGCGCACCAGGCCGACTTTGATGTGGTCTGGCCTCGCGGCACAGTTGG
GACGAAGATTTTTGCCCCCCTCGTGGATCGCATACGGGTTCATGGAGGAA
ATATAAGAACGTCGACTAGACTGAAAGATGTTGTGATTGACAACAACAAA
ATAACCAAGATTGTGACAACTAAAGACGGAAGTGAGAGCGTGCTGGCCGT
TGACGCCGTAGTCTTTGCTGTCGGAATCAGCGGACTGCAAGGCATTTTAC
GCAACAGCAAAACGCTCGCATCTCGAAAGGATTTTCGCAACACGAACAAC
TTGTCAAGTATTGATGTCATGGCAGTACGATTATACTTCAATAGAAAGAT
TCGCATCGAATTTGATTCGAATGCATGTTTTGGTTTCGATGAAACTACAG
GATGGACATATTTCAACCTCAATGCCATCCACGACGAGTTTAAGGATGCG
GAGAAGACCGTCATTGAGGCCGATTTCTATCACAGTAATCAGCTCATGCC
CATGGAGGACACTGAGATCGTTGAAGAAGTACGAAGAAGACTCTGTGTGG
CTGAGAGGACGTTTAAAGGTGCAGAAGTCGAAGACTACGTTGTCGTCCGA
GTTCCTCGCGGTGTAACACGTACGTTGTTCTGCTCATGCGTCAATAATTA
AGTTTCGATTGCCACTCAAAGGTTTTCTCATGCTTTCTGACTATTTTTTT
TTTATGATCGCGGGTGTGACTTAAACAAAAAAGACTTTCGGCCTGGATCG
TATCAAGACTTCATGAACGTAAGAACATCGATTGACAACGTCTTCATGTC
CGGAGGTAAGTTGTGAACATTTCACTCGTAGACACCGAACAGAAAACAGT
GTGGCGCGCTTTCCTTTCTCTACAGCACGATATACTGATTACCCCCTCAC
TTTCCTATTTGATGCTTGCCCGCGATATTTATCTCTCACACATCCAAATG
TGCATACCCAATTTCACCCTTAGACTGGTAAGTGAAGAACTGTGCCCGAC
TACCATGAAGTATCCTTATTCCCCCTAGACTAACGCCAATCTCTTGTTAC
CATGCGCTCAGGATACGTACGTCTCACGGAAGTTTCAGCCAGGAAAAAGC
TCTTGTCACTGGTTACGAAGCTGCAAACGCGACTCTAGAGTATTTTGGAT
ATGAAAAGTCGGCCCAAAAAACAATTATTCCAGTTGAGGAGGACGAGCCC
CATATCATCGTTGCTAGGCGCGTCTACAAAGCTTTGGAAAGAATTCGCCG
CCAGTTTAATCCATTCTCAGGCCTATTCATAGTGTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:827842..829878-

>Gchil8233.t2 ID=Gchil8233.t2|Name=Gchil8233.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1671bp|location=Sequence derived from alignment at tig00004384_pilon:827842..829878- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTTGCTTCCAATCCCGCCTTTGTTCTCGGTCCATTACTTAATAA
TAACCCCGTTCAGTCGGCTCCAAGAGATTTTCGTCGCCAGATTATCAAAG
AAGCTGCGCGACATGGGCCGAGATGGAAAATGGAATCCAAGAATACGAGC
ACGAATCGCGTCGCTGTTATTGGAGCTGGTTGGGCTGGTTTAGGAGCTGC
TCACCACCTTGTGCAACAATTTGGAACTGAGATTACTCTCATTGACGCTG
CTCCCTCTGTGGGAGGATTGGTTGCCGGATGGAAGACAGCAAATGGCCAA
GATGTAGAGGTAGGCATTCACGGCATGTGGCGCCCATATTATAACCTCTT
TCATTTGGTTAAACGCGAATTGAAGTTAGATCCCTTCACCGACTGGACGA
AGTCATCCCAGAGATCTCCGAAAGGAAAAGTCGTCGAAAGCCCAATCTTC
AACGACTTACCGAGACTCCCAACACCGTTGGGTACATTTGTATACACCAA
GTTCTTGGATCTGCCTTTGGCTGATAGGCTATCGGCACTTCCTTTGCTTG
AAGCCGTCATTGAATGGGACAACTCCGATGAAGTGTGGCGCAAATTTGAT
AAAATGACAGCGAAAGAATTGTTTAAGCTATACGGTTGTACTGAGCGTGT
CTATAAAGAAGCCTTTGAACCAATGCTGCTAGTGGGTTTATTCGCCCCAG
GAGAACAATGCAGCGCGGCTGGTGCCCTGGGTATGTTGTATTTCTTTATT
CTTGCGCACCAGGCCGACTTTGATGTGGTCTGGCCTCGCGGCACAGTTGG
GACGAAGATTTTTGCCCCCCTCGTGGATCGCATACGGGTTCATGGAGGAA
ATATAAGAACGTCGACTAGACTGAAAGATGTTGTGATTGACAACAACAAA
ATAACCAAGATTGTGACAACTAAAGACGGAAGTGAGAGCGTGCTGGCCGT
TGACGCCGTAGTCTTTGCTGTCGGAATCAGCGGACTGCAAGGCATTTTAC
GCAACAGCAAAACGCTCGCATCTCGAAAGGATTTTCGCAACACGAACAAC
TTGTCAAGTATTGATGTCATGGCAGTACGATTATACTTCAATAGAAAGAT
TCGCATCGAATTTGATTCGAATGCATGTTTTGGTTTCGATGAAACTACAG
GATGGACATATTTCAACCTCAATGCCATCCACGACGAGTTTAAGGATGCG
GAGAAGACCGTCATTGAGGCCGATTTCTATCACAGTAATCAGCTCATGCC
CATGGAGGACACTGAGATCGTTGAAGAAGTACGAAGAAGACTCTGTGTGG
CTGAGAGGACGTTTAAAGGTGCAGAAGTCGAAGACTACGTTGTCGTCCGA
GTTCCTCGCGGTGTAACACACTTTCGGCCTGGATCGTATCAAGACTTCAT
GAACGTAAGAACATCGATTGACAACGTCTTCATGTCCGGAGGTAAGATAC
GTACGTCTCACGGAAGTTTCAGCCAGGAAAAAGCTCTTGTCACTGGTTAC
GAAGCTGCAAACGCGACTCTAGAGTATTTTGGATATGAAAAGTCGGCCCA
AAAAACAATTATTCCAGTTGAGGAGGACGAGCCCCATATCATCGTTGCTA
GGCGCGTCTACAAAGCTTTGGAAAGAATTCGCCGCCAGTTTAATCCATTC
TCAGGCCTATTCATAGTGTAG
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