Gchil8232.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8232.t1
Unique NameGchil8232.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:827102..827756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX45998
Max annot lvl2759|Eukaryota
Evalue4.87e-07
EggNOG OGs2E7WI@1|root,2SEER@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8232Gchil8232Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 827102..827756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8232.t1Gchil8232.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 827102..827756 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8232.t1.start1Gchil8232.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 827102..827104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8232.t1.CDS1Gchil8232.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 827102..827265 +
Gchil8232.t1.CDS2Gchil8232.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 827363..827756 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8232.t1.exon1Gchil8232.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 827102..827265 +
Gchil8232.t1.exon2Gchil8232.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 827363..827756 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8232.t1.intron1Gchil8232.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 827266..827362 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8232.t1.stop1Gchil8232.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 827754..827756 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8232.t1 ID=Gchil8232.t1|Name=Gchil8232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=186bp
MKDGNGTICRRTWLKKASAVVMGVAIQPLVAEATMYSSDTKSDFSITGDP
KKLETYLPQIEAGYNALVELENNWEAKTNSFDGDVVRRVLGTVGVKSPLF
NIRKSFLKSWQIVADTSSDDDLIERLESEWNDVLDGISSVDFQLYSVSFT
ELTESKLSLIKQGRQALVDTIDTYGKLLKDLRSAI*
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spliced messenger RNA

>Gchil8232.t1 ID=Gchil8232.t1|Name=Gchil8232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00004384_pilon:827102..827756+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGATGGAAATGGGACCATTTGTCGCAGAACGTGGTTAAAGAAAGC
ATCAGCTGTGGTGATGGGTGTGGCCATACAGCCCCTGGTGGCAGAAGCAA
CCATGTATTCTTCGGACACAAAGTCGGACTTCTCAATTACGGGTGATCCT
AAGAAACTTGAAACGTATTTGCCACAAATCGAGGCCGGATACAATGCCCT
TGTAGAACTCGAGAATAATTGGGAGGCGAAGACTAACAGTTTTGACGGGG
ACGTTGTTCGTCGAGTTCTCGGTACTGTAGGAGTCAAATCACCGCTTTTC
AATATCAGAAAGTCTTTCTTGAAGTCATGGCAAATTGTAGCCGATACTAG
TTCAGACGATGACCTCATCGAAAGGTTGGAATCGGAATGGAATGACGTGC
TCGATGGTATATCATCAGTAGACTTCCAACTGTACTCGGTGAGTTTCACA
GAGCTCACTGAAAGCAAGCTAAGTCTTATTAAACAGGGAAGACAAGCTTT
GGTGGACACTATTGATACGTACGGTAAACTACTGAAAGATCTTAGATCAG
CGATTTGA
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protein sequence of Gchil8232.t1

>Gchil8232.t1 ID=Gchil8232.t1|Name=Gchil8232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=186bp
MKDGNGTICRRTWLKKASAVVMGVAIQPLVAEATMYSSDTKSDFSITGDP
KKLETYLPQIEAGYNALVELENNWEAKTNSFDGDVVRRVLGTVGVKSPLF
NIRKSFLKSWQIVADTSSDDDLIERLESEWNDVLDGISSVDFQLYSVSFT
ELTESKLSLIKQGRQALVDTIDTYGKLLKDLRSAI*
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mRNA from alignment at tig00004384_pilon:827102..827756+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8232.t1 ID=Gchil8232.t1|Name=Gchil8232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=655bp|location=Sequence derived from alignment at tig00004384_pilon:827102..827756+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGATGGAAATGGGACCATTTGTCGCAGAACGTGGTTAAAGAAAGC
ATCAGCTGTGGTGATGGGTGTGGCCATACAGCCCCTGGTGGCAGAAGCAA
CCATGTATTCTTCGGACACAAAGTCGGACTTCTCAATTACGGGTGATCCT
AAGAAACTTGAAACGTGAGTGAAAGCGGTACTACTTGAATCCTCCTTGTG
CGTCCCCAATTTCTAACGAACAGTTTTCCAAACTGTAACTTATCTTTGGA
TATCGGAGTAGGTATTTGCCACAAATCGAGGCCGGATACAATGCCCTTGT
AGAACTCGAGAATAATTGGGAGGCGAAGACTAACAGTTTTGACGGGGACG
TTGTTCGTCGAGTTCTCGGTACTGTAGGAGTCAAATCACCGCTTTTCAAT
ATCAGAAAGTCTTTCTTGAAGTCATGGCAAATTGTAGCCGATACTAGTTC
AGACGATGACCTCATCGAAAGGTTGGAATCGGAATGGAATGACGTGCTCG
ATGGTATATCATCAGTAGACTTCCAACTGTACTCGGTGAGTTTCACAGAG
CTCACTGAAAGCAAGCTAAGTCTTATTAAACAGGGAAGACAAGCTTTGGT
GGACACTATTGATACGTACGGTAAACTACTGAAAGATCTTAGATCAGCGA
TTTGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:827102..827756+

>Gchil8232.t1 ID=Gchil8232.t1|Name=Gchil8232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00004384_pilon:827102..827756+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGATGGAAATGGGACCATTTGTCGCAGAACGTGGTTAAAGAAAGC
ATCAGCTGTGGTGATGGGTGTGGCCATACAGCCCCTGGTGGCAGAAGCAA
CCATGTATTCTTCGGACACAAAGTCGGACTTCTCAATTACGGGTGATCCT
AAGAAACTTGAAACGTATTTGCCACAAATCGAGGCCGGATACAATGCCCT
TGTAGAACTCGAGAATAATTGGGAGGCGAAGACTAACAGTTTTGACGGGG
ACGTTGTTCGTCGAGTTCTCGGTACTGTAGGAGTCAAATCACCGCTTTTC
AATATCAGAAAGTCTTTCTTGAAGTCATGGCAAATTGTAGCCGATACTAG
TTCAGACGATGACCTCATCGAAAGGTTGGAATCGGAATGGAATGACGTGC
TCGATGGTATATCATCAGTAGACTTCCAACTGTACTCGGTGAGTTTCACA
GAGCTCACTGAAAGCAAGCTAAGTCTTATTAAACAGGGAAGACAAGCTTT
GGTGGACACTATTGATACGTACGGTAAACTACTGAAAGATCTTAGATCAG
CGATTTGA
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