Gchil8224.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8224.t1
Unique NameGchil8224.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:732510..733317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000022271
PFAMsDUF3228
Max annot lvl121069|Pythiales
Evalue8.74e-68
EggNOG OGs29VSF@1|root,2RXMS@2759|Eukaryota,1MEBQ@121069|Pythiales
Descriptionflagellar associated protein. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8224Gchil8224Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 732510..733317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8224.t1Gchil8224.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 732510..733317 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8224.t1.start1Gchil8224.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 732510..732512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8224.t1.CDS1Gchil8224.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 732510..732885 +
Gchil8224.t1.CDS2Gchil8224.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 732972..733092 +
Gchil8224.t1.CDS3Gchil8224.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 733197..733317 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8224.t1.exon1Gchil8224.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 732510..732885 +
Gchil8224.t1.exon2Gchil8224.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 732972..733092 +
Gchil8224.t1.exon3Gchil8224.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 733197..733317 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8224.t1.intron1Gchil8224.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 732886..732971 +
Gchil8224.t1.intron2Gchil8224.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 733093..733196 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8224.t1.stop1Gchil8224.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 733315..733317 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8224.t1 ID=Gchil8224.t1|Name=Gchil8224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=206bp
MPDISLDSFSYRQFDDPKYGGTKIKLPKEQFMKKVLAYYDERKAMQNEYK
DRPVLVDGYAPFCKHIFMPNFDNSIRDGAMEITSENEHLLKTAYEARNEK
ELPVLIRFFPGDKVSPPVSKFLDLILYSREQIQKENLVMGKSDAVDDAPW
RLISVKGQAEPFEIPMNPITIMRNELISQGGSGVPINRDAYMKSVEYWRT
HAAVH*
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spliced messenger RNA

>Gchil8224.t1 ID=Gchil8224.t1|Name=Gchil8224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=618bp|location=Sequence derived from alignment at tig00004384_pilon:732510..733317+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGACATTTCATTAGACTCATTCTCATATCGCCAATTCGACGATCC
AAAGTATGGTGGTACAAAGATCAAACTACCGAAAGAACAGTTTATGAAAA
AGGTTCTTGCATACTACGACGAGCGGAAAGCCATGCAAAATGAATATAAG
GACCGGCCCGTTCTGGTCGATGGATATGCTCCGTTTTGCAAGCATATCTT
CATGCCCAACTTCGACAACTCCATACGCGATGGAGCAATGGAGATTACCT
CTGAAAATGAACACTTGCTGAAAACCGCGTACGAGGCCCGCAATGAAAAA
GAACTCCCGGTCTTAATCCGTTTCTTTCCCGGAGACAAAGTTTCACCTCC
AGTTTCCAAGTTTCTCGACCTGATTTTGTATAGCCGCGAACAAATTCAAA
AGGAAAATCTAGTGATGGGGAAAAGTGACGCGGTGGATGACGCACCCTGG
CGTCTCATCAGCGTAAAAGGTCAAGCAGAACCGTTTGAAATTCCAATGAA
CCCCATTACAATCATGAGAAACGAGCTTATTTCGCAAGGAGGAAGTGGAG
TTCCAATTAATCGTGATGCATATATGAAAAGCGTGGAATACTGGAGAACC
CATGCCGCGGTTCACTGA
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protein sequence of Gchil8224.t1

>Gchil8224.t1 ID=Gchil8224.t1|Name=Gchil8224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=206bp
MPDISLDSFSYRQFDDPKYGGTKIKLPKEQFMKKVLAYYDERKAMQNEYK
DRPVLVDGYAPFCKHIFMPNFDNSIRDGAMEITSENEHLLKTAYEARNEK
ELPVLIRFFPGDKVSPPVSKFLDLILYSREQIQKENLVMGKSDAVDDAPW
RLISVKGQAEPFEIPMNPITIMRNELISQGGSGVPINRDAYMKSVEYWRT
HAAVH*
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mRNA from alignment at tig00004384_pilon:732510..733317+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8224.t1 ID=Gchil8224.t1|Name=Gchil8224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=808bp|location=Sequence derived from alignment at tig00004384_pilon:732510..733317+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGACATTTCATTAGACTCATTCTCATATCGCCAATTCGACGATCC
AAAGTATGGTGGTACAAAGATCAAACTACCGAAAGAACAGTTTATGAAAA
AGGTTCTTGCATACTACGACGAGCGGAAAGCCATGCAAAATGAATATAAG
GACCGGCCCGTTCTGGTCGATGGATATGCTCCGTTTTGCAAGCATATCTT
CATGCCCAACTTCGACAACTCCATACGCGATGGAGCAATGGAGATTACCT
CTGAAAATGAACACTTGCTGAAAACCGCGTACGAGGCCCGCAATGAAAAA
GAACTCCCGGTCTTAATCCGTTTCTTTCCCGGAGACAAAGTTTCACCTCC
AGTTTCCAAGTTTCTCGACCTGATTTGTAAGTTGGGGCAGAATCCATACT
GACTGCGTTGGTGGTATCTGACCACATGGGAACTCATACCATCCTTTCGG
CGATTTGTACAGTGTATAGCCGCGAACAAATTCAAAAGGAAAATCTAGTG
ATGGGGAAAAGTGACGCGGTGGATGACGCACCCTGGCGTCTCATCAGCGT
AAAAGGTCAAGCAGAACCGTTTGAAATTCCAATGTGAGTTTATTGTTATT
TACAATGCTGTATATACTCCCTTGACGAAGACTAATACACCTCGAAATAT
ATCACTGACTCAGTCCAATTTCTTTCCATCCACGAAGGAACCCCATTACA
ATCATGAGAAACGAGCTTATTTCGCAAGGAGGAAGTGGAGTTCCAATTAA
TCGTGATGCATATATGAAAAGCGTGGAATACTGGAGAACCCATGCCGCGG
TTCACTGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:732510..733317+

>Gchil8224.t1 ID=Gchil8224.t1|Name=Gchil8224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=618bp|location=Sequence derived from alignment at tig00004384_pilon:732510..733317+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGACATTTCATTAGACTCATTCTCATATCGCCAATTCGACGATCC
AAAGTATGGTGGTACAAAGATCAAACTACCGAAAGAACAGTTTATGAAAA
AGGTTCTTGCATACTACGACGAGCGGAAAGCCATGCAAAATGAATATAAG
GACCGGCCCGTTCTGGTCGATGGATATGCTCCGTTTTGCAAGCATATCTT
CATGCCCAACTTCGACAACTCCATACGCGATGGAGCAATGGAGATTACCT
CTGAAAATGAACACTTGCTGAAAACCGCGTACGAGGCCCGCAATGAAAAA
GAACTCCCGGTCTTAATCCGTTTCTTTCCCGGAGACAAAGTTTCACCTCC
AGTTTCCAAGTTTCTCGACCTGATTTTGTATAGCCGCGAACAAATTCAAA
AGGAAAATCTAGTGATGGGGAAAAGTGACGCGGTGGATGACGCACCCTGG
CGTCTCATCAGCGTAAAAGGTCAAGCAGAACCGTTTGAAATTCCAATGAA
CCCCATTACAATCATGAGAAACGAGCTTATTTCGCAAGGAGGAAGTGGAG
TTCCAATTAATCGTGATGCATATATGAAAAGCGTGGAATACTGGAGAACC
CATGCCGCGGTTCACTGA
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